Wall clock time and date at job start Tue Mar 31 2020 19:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00184 * 2 1 4 4 C 1.52998 * 109.47282 * 184.99404 * 3 2 1 5 5 N 1.46497 * 109.47259 * 184.99255 * 4 3 2 6 6 N 1.28450 * 125.19190 * 85.18536 * 5 4 3 7 7 C 1.30859 * 110.92770 * 179.97438 * 6 5 4 8 8 C 1.39676 * 107.86089 * 0.26777 * 7 6 5 9 9 C 1.36603 * 125.19213 * 265.16261 * 5 4 3 10 10 C 1.47163 * 126.88098 * 359.97438 * 9 5 4 11 11 O 1.21629 * 120.00104 * 6.29494 * 10 9 5 12 12 N 1.34772 * 119.99886 * 186.29250 * 10 9 5 13 13 C 1.48121 * 127.03180 * 185.50336 * 12 10 9 14 14 C 1.54598 * 103.42206 * 219.29011 * 13 12 10 15 15 H 1.08999 * 110.57726 * 81.17643 * 14 13 12 16 16 C 1.53000 * 110.98739 * 204.37606 * 14 13 12 17 17 N 1.46502 * 109.47405 * 288.65277 * 16 14 13 18 18 C 1.36931 * 120.00246 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00089 * 359.97438 * 18 17 16 20 20 C 1.38821 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00028 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99762 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46964 * 90.00164 * 22 20 18 24 24 H 1.48503 * 109.47037 * 210.00101 * 22 20 18 25 25 H 1.48498 * 109.47124 * 330.00201 * 22 20 18 26 26 C 1.54616 * 102.91482 * 322.86907 * 14 13 12 27 27 H 1.08997 * 110.32731 * 262.80970 * 26 14 13 28 28 C 1.52995 * 110.41459 * 140.63462 * 26 14 13 29 29 C 1.47485 * 127.03533 * 5.82610 * 12 10 9 30 30 H 1.09003 * 109.47302 * 64.99724 * 1 2 3 31 31 H 1.09005 * 109.47085 * 184.99466 * 1 2 3 32 32 H 1.08998 * 109.47393 * 304.99720 * 1 2 3 33 33 H 1.08997 * 109.47265 * 64.99265 * 3 2 1 34 34 H 1.09002 * 109.46807 * 304.98886 * 3 2 1 35 35 H 1.08994 * 109.47306 * 64.99105 * 4 3 2 36 36 H 1.08996 * 109.47023 * 304.99018 * 4 3 2 37 37 H 1.08001 * 126.06909 * 179.97438 * 7 6 5 38 38 H 1.08000 * 127.31748 * 179.73734 * 8 7 6 39 39 H 1.08997 * 110.66491 * 337.77533 * 13 12 10 40 40 H 1.09005 * 110.65730 * 100.89111 * 13 12 10 41 41 H 1.09003 * 109.47520 * 48.65109 * 16 14 13 42 42 H 1.08997 * 109.47632 * 168.65376 * 16 14 13 43 43 H 0.97003 * 119.99791 * 0.02562 * 17 16 14 44 44 H 0.96998 * 119.99833 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.47111 * 298.05678 * 28 26 14 46 46 H 1.09005 * 109.47225 * 58.05369 * 28 26 14 47 47 H 1.08999 * 109.47300 * 178.05617 * 28 26 14 48 48 H 1.08994 * 109.91039 * 273.87314 * 29 12 10 49 49 H 1.09003 * 109.90902 * 35.15318 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5304 1.1868 -0.1256 5 7 4.1354 2.5156 -0.0060 6 7 4.4368 3.0950 1.1001 7 6 4.9624 4.2735 0.8825 8 6 4.9992 4.4776 -0.4988 9 6 4.4657 3.3275 -1.0538 10 6 4.2855 3.0390 -2.4855 11 8 3.6932 2.0354 -2.8339 12 7 4.7767 3.8869 -3.4108 13 6 4.5900 3.8117 -4.8783 14 6 5.9719 4.2213 -5.4373 15 1 6.6592 3.3755 -5.4175 16 6 5.8453 4.7807 -6.8557 17 7 5.5269 3.6924 -7.7834 18 6 5.3657 3.9550 -9.1175 19 1 5.4729 4.9645 -9.4860 20 6 5.0635 2.9238 -9.9964 21 7 4.9090 3.1762 -11.2789 22 14 4.8775 1.1778 -9.3590 23 1 3.4617 0.9372 -8.9807 24 1 5.2763 0.2184 -10.4200 25 1 5.7464 0.9899 -8.1695 26 6 6.4302 5.3225 -4.4534 27 1 6.2077 6.3093 -4.8592 28 6 7.9272 5.1921 -4.1661 29 6 5.6156 5.0758 -3.1699 30 1 -0.3634 0.4344 -0.9314 31 1 -0.3633 -1.0238 0.0895 32 1 -0.3634 0.5894 0.8418 33 1 1.7612 1.8140 0.9313 34 1 1.6196 1.8770 -0.8420 35 1 3.7826 0.7588 -1.0957 36 1 3.9111 0.5417 0.6662 37 1 5.3026 4.9672 1.6371 38 1 5.3680 5.3472 -1.0225 39 1 4.3387 2.7956 -5.1825 40 1 3.8220 4.5131 -5.2047 41 1 5.0500 5.5256 -6.8830 42 1 6.7873 5.2441 -7.1491 43 1 5.4303 2.7857 -7.4524 44 1 4.6982 2.4555 -11.8930 45 1 8.1240 4.2298 -3.6935 46 1 8.4838 5.2582 -5.1010 47 1 8.2405 5.9952 -3.4991 48 1 4.9844 5.9390 -2.9591 49 1 6.2888 4.8915 -2.3326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106298000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:00 Heat of formation + Delta-G solvation = 26.466440 kcal Electronic energy + Delta-G solvation = -29614.299291 eV Core-core repulsion = 25579.400412 eV Total energy + Delta-G solvation = -4034.898880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.87958 -40.11616 -38.35157 -38.01189 -35.03264 -34.19352 -33.02850 -31.71916 -31.25653 -29.65925 -29.37086 -26.90510 -26.56598 -25.93190 -23.99218 -23.44124 -22.40568 -21.61232 -21.05159 -20.12775 -19.66614 -17.85994 -17.46214 -16.97614 -16.57519 -16.41741 -16.24052 -15.73154 -15.56141 -14.96965 -14.70386 -14.47286 -14.43581 -14.13490 -13.88864 -13.75786 -13.50703 -13.35721 -13.03236 -12.77040 -12.50417 -12.45464 -12.20205 -12.06000 -11.89498 -11.68976 -11.55663 -11.44566 -11.10223 -10.94238 -10.67750 -10.58531 -10.40729 -10.19706 -10.11976 -10.07396 -9.60118 -9.55701 -9.35464 -8.92674 -8.82458 -7.26150 -5.78380 -3.14458 0.96452 1.88595 2.30668 2.74699 2.96729 3.38758 3.42429 3.46946 3.55260 4.07743 4.20007 4.40606 4.51868 4.58597 4.60791 4.64569 4.72849 4.84780 4.89581 4.97687 5.01271 5.04846 5.17952 5.28914 5.30656 5.32766 5.34517 5.37734 5.39754 5.46850 5.51803 5.60650 5.64513 5.65760 5.85838 5.91554 5.98524 6.06882 6.10612 6.16943 6.30591 6.36406 6.57533 6.66992 6.67452 7.28719 7.70472 7.89014 7.96651 8.40421 9.18988 9.91571 10.10397 11.39874 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.003112 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.219711 B = 8996.514762 C =11125.860298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.056 3.944 4 C 0.118 3.882 5 N -0.256 5.256 6 N -0.277 5.277 7 C -0.001 4.001 8 C -0.196 4.196 9 C -0.027 4.027 10 C 0.603 3.397 11 O -0.538 6.538 12 N -0.604 5.604 13 C 0.114 3.886 14 C -0.107 4.107 15 H 0.084 0.916 16 C 0.170 3.830 17 N -0.757 5.757 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.100 4.100 27 H 0.092 0.908 28 C -0.143 4.143 29 C 0.094 3.906 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.188 0.812 38 H 0.170 0.830 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.361 0.639 44 H 0.260 0.740 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 3.413 27.647 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C -0.022 4.022 4 C -0.002 4.002 5 N -0.045 5.045 6 N -0.109 5.109 7 C -0.178 4.178 8 C -0.224 4.224 9 C -0.155 4.155 10 C 0.391 3.609 11 O -0.416 6.416 12 N -0.337 5.337 13 C -0.007 4.007 14 C -0.127 4.127 15 H 0.102 0.898 16 C 0.042 3.958 17 N -0.402 5.402 18 C -0.376 4.376 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.712 3.288 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.119 4.119 27 H 0.110 0.890 28 C -0.200 4.200 29 C -0.029 4.029 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.145 0.855 36 H 0.125 0.875 37 H 0.205 0.795 38 H 0.188 0.812 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.194 0.806 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.646 1.866 28.143 28.253 hybrid contribution -0.142 -0.404 -0.277 0.510 sum -1.788 1.462 27.866 27.962 Atomic orbital electron populations 1.22791 0.79977 1.03094 1.00398 1.87789 1.20522 1.26470 1.95544 1.22617 0.92461 0.85817 1.01309 1.21879 0.92513 0.78680 1.07162 1.45506 1.42493 1.14627 1.01879 1.73226 1.17096 1.10115 1.10440 1.23639 1.03582 0.94463 0.96091 1.22720 1.06003 0.98963 0.94756 1.21401 1.09455 0.94175 0.90426 1.16456 0.79251 0.82389 0.82828 1.90828 1.43244 1.26043 1.81436 1.48424 1.50550 1.27008 1.07672 1.22623 0.97943 1.03658 0.76473 1.22585 0.95969 0.98386 0.95775 0.89760 1.20606 0.98388 0.91233 0.85565 1.42734 1.86963 1.05207 1.05341 1.19031 1.40623 0.96121 0.81776 0.89162 1.24666 1.01619 0.97477 0.95215 1.69699 1.54969 1.31764 1.01702 0.86587 0.78149 0.86155 0.77876 1.20935 1.21673 1.20331 1.22108 0.95554 1.00274 0.93970 0.88952 1.21846 0.94444 1.01549 1.02181 1.22668 0.93546 0.87598 0.99111 0.93582 0.89109 0.93910 0.92516 0.92136 0.85523 0.87494 0.79490 0.81237 0.89409 0.89895 0.95119 0.94914 0.80623 0.93023 0.92701 0.91624 0.92462 0.90827 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.29 10.70 -35.23 -0.38 -4.66 16 3 C 0.06 0.60 6.26 37.16 0.23 0.83 16 4 C 0.12 1.32 6.24 -4.04 -0.03 1.29 16 5 N -0.26 -3.05 3.35 -57.15 -0.19 -3.24 16 6 N -0.28 -3.14 11.90 30.59 0.36 -2.78 16 7 C 0.00 -0.01 12.03 -17.43 -0.21 -0.22 16 8 C -0.20 -1.81 9.34 -38.99 -0.36 -2.18 16 9 C -0.03 -0.32 6.90 -82.06 -0.57 -0.89 16 10 C 0.60 8.49 7.85 -12.64 -0.10 8.39 16 11 O -0.54 -9.15 14.87 5.25 0.08 -9.07 16 12 N -0.60 -7.60 3.29 -171.34 -0.56 -8.17 16 13 C 0.11 1.64 6.47 -2.31 -0.01 1.63 16 14 C -0.11 -1.48 2.60 -88.93 -0.23 -1.72 16 15 H 0.08 1.26 7.87 -51.93 -0.41 0.85 16 16 C 0.17 2.98 5.58 -4.04 -0.02 2.96 16 17 N -0.76 -17.41 5.33 -59.91 -0.32 -17.72 16 18 C -0.25 -6.85 10.47 -15.06 -0.16 -7.00 16 19 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 22 Si 0.88 22.33 27.74 -169.99 -4.71 17.62 16 23 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.28 -6.64 6.52 56.52 0.37 -6.28 16 26 C -0.10 -0.98 3.17 -89.25 -0.28 -1.27 16 27 H 0.09 0.84 7.85 -51.93 -0.41 0.43 16 28 C -0.14 -1.27 8.89 37.16 0.33 -0.94 16 29 C 0.09 0.85 4.89 -2.98 -0.01 0.83 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.13 1.60 6.18 -51.93 -0.32 1.28 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.17 1.13 5.10 -52.49 -0.27 0.86 16 39 H 0.09 1.47 7.81 -51.93 -0.41 1.06 16 40 H 0.08 1.17 7.95 -51.93 -0.41 0.76 16 41 H 0.03 0.54 8.00 -51.93 -0.42 0.12 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.36 8.27 5.53 -40.82 -0.23 8.04 16 44 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 49 H 0.09 0.66 5.42 -51.93 -0.28 0.38 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -34.61 394.51 -7.21 -41.82 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.80 Total: 5.56 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.41 Total: 3.20 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.06 Total: -60.41 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.30 Total: -13.74 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.61 -7.21 -41.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106298000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.289 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds