Wall clock time and date at job start Tue Mar 31 2020 19:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00184 * 2 1 4 4 C 1.52998 * 109.47282 * 184.99404 * 3 2 1 5 5 N 1.46497 * 109.47259 * 184.99255 * 4 3 2 6 6 N 1.28450 * 125.19190 * 85.18536 * 5 4 3 7 7 C 1.30859 * 110.92770 * 179.97438 * 6 5 4 8 8 C 1.39676 * 107.86089 * 0.26777 * 7 6 5 9 9 C 1.36603 * 125.19213 * 265.16261 * 5 4 3 10 10 C 1.47163 * 126.88098 * 359.97438 * 9 5 4 11 11 O 1.21629 * 120.00104 * 6.29494 * 10 9 5 12 12 N 1.34772 * 119.99886 * 186.29250 * 10 9 5 13 13 C 1.48121 * 127.03180 * 185.50336 * 12 10 9 14 14 C 1.54598 * 103.42206 * 219.29011 * 13 12 10 15 15 H 1.08999 * 110.57726 * 81.17643 * 14 13 12 16 16 C 1.53000 * 110.98739 * 204.37606 * 14 13 12 17 17 N 1.46502 * 109.47405 * 288.65277 * 16 14 13 18 18 C 1.36931 * 120.00246 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00089 * 359.97438 * 18 17 16 20 20 C 1.38821 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00028 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99762 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46964 * 90.00164 * 22 20 18 24 24 H 1.48503 * 109.47037 * 210.00101 * 22 20 18 25 25 H 1.48498 * 109.47124 * 330.00201 * 22 20 18 26 26 C 1.54616 * 102.91482 * 322.86907 * 14 13 12 27 27 H 1.08997 * 110.32731 * 262.80970 * 26 14 13 28 28 C 1.52995 * 110.41459 * 140.63462 * 26 14 13 29 29 C 1.47485 * 127.03533 * 5.82610 * 12 10 9 30 30 H 1.09003 * 109.47302 * 64.99724 * 1 2 3 31 31 H 1.09005 * 109.47085 * 184.99466 * 1 2 3 32 32 H 1.08998 * 109.47393 * 304.99720 * 1 2 3 33 33 H 1.08997 * 109.47265 * 64.99265 * 3 2 1 34 34 H 1.09002 * 109.46807 * 304.98886 * 3 2 1 35 35 H 1.08994 * 109.47306 * 64.99105 * 4 3 2 36 36 H 1.08996 * 109.47023 * 304.99018 * 4 3 2 37 37 H 1.08001 * 126.06909 * 179.97438 * 7 6 5 38 38 H 1.08000 * 127.31748 * 179.73734 * 8 7 6 39 39 H 1.08997 * 110.66491 * 337.77533 * 13 12 10 40 40 H 1.09005 * 110.65730 * 100.89111 * 13 12 10 41 41 H 1.09003 * 109.47520 * 48.65109 * 16 14 13 42 42 H 1.08997 * 109.47632 * 168.65376 * 16 14 13 43 43 H 0.97003 * 119.99791 * 0.02562 * 17 16 14 44 44 H 0.96998 * 119.99833 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.47111 * 298.05678 * 28 26 14 46 46 H 1.09005 * 109.47225 * 58.05369 * 28 26 14 47 47 H 1.08999 * 109.47300 * 178.05617 * 28 26 14 48 48 H 1.08994 * 109.91039 * 273.87314 * 29 12 10 49 49 H 1.09003 * 109.90902 * 35.15318 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5304 1.1868 -0.1256 5 7 4.1354 2.5156 -0.0060 6 7 4.4368 3.0950 1.1001 7 6 4.9624 4.2735 0.8825 8 6 4.9992 4.4776 -0.4988 9 6 4.4657 3.3275 -1.0538 10 6 4.2855 3.0390 -2.4855 11 8 3.6932 2.0354 -2.8339 12 7 4.7767 3.8869 -3.4108 13 6 4.5900 3.8117 -4.8783 14 6 5.9719 4.2213 -5.4373 15 1 6.6592 3.3755 -5.4175 16 6 5.8453 4.7807 -6.8557 17 7 5.5269 3.6924 -7.7834 18 6 5.3657 3.9550 -9.1175 19 1 5.4729 4.9645 -9.4860 20 6 5.0635 2.9238 -9.9964 21 7 4.9090 3.1762 -11.2789 22 14 4.8775 1.1778 -9.3590 23 1 3.4617 0.9372 -8.9807 24 1 5.2763 0.2184 -10.4200 25 1 5.7464 0.9899 -8.1695 26 6 6.4302 5.3225 -4.4534 27 1 6.2077 6.3093 -4.8592 28 6 7.9272 5.1921 -4.1661 29 6 5.6156 5.0758 -3.1699 30 1 -0.3634 0.4344 -0.9314 31 1 -0.3633 -1.0238 0.0895 32 1 -0.3634 0.5894 0.8418 33 1 1.7612 1.8140 0.9313 34 1 1.6196 1.8770 -0.8420 35 1 3.7826 0.7588 -1.0957 36 1 3.9111 0.5417 0.6662 37 1 5.3026 4.9672 1.6371 38 1 5.3680 5.3472 -1.0225 39 1 4.3387 2.7956 -5.1825 40 1 3.8220 4.5131 -5.2047 41 1 5.0500 5.5256 -6.8830 42 1 6.7873 5.2441 -7.1491 43 1 5.4303 2.7857 -7.4524 44 1 4.6982 2.4555 -11.8930 45 1 8.1240 4.2298 -3.6935 46 1 8.4838 5.2582 -5.1010 47 1 8.2405 5.9952 -3.4991 48 1 4.9844 5.9390 -2.9591 49 1 6.2888 4.8915 -2.3326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106298000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:59 Heat of formation + Delta-G solvation = 1.797693 kcal Electronic energy + Delta-G solvation = -29615.369009 eV Core-core repulsion = 25579.400412 eV Total energy + Delta-G solvation = -4035.968597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.66637 -41.12393 -39.21800 -39.03631 -36.67786 -35.08966 -34.25642 -33.29584 -32.33199 -30.71440 -30.41621 -27.75351 -27.29458 -27.26131 -25.11752 -24.57022 -23.63173 -22.58111 -22.19589 -21.19226 -20.55180 -19.65078 -18.53098 -17.87408 -17.47288 -17.25918 -17.21785 -16.70466 -16.53034 -16.45670 -15.87956 -15.62697 -15.43284 -15.18871 -15.01878 -14.76713 -14.65204 -14.52484 -14.20895 -13.85158 -13.77901 -13.58158 -13.21824 -13.17253 -12.93683 -12.83247 -12.69031 -12.51700 -12.41901 -12.13077 -11.96295 -11.85618 -11.69977 -11.55626 -11.44261 -11.22392 -10.99291 -10.88626 -10.40012 -10.11454 -9.80843 -9.29895 -8.04523 -5.36563 0.09794 1.06375 1.35288 1.37267 1.43241 1.58680 1.81270 2.03006 2.45204 2.79171 3.17623 3.27961 3.41168 3.49897 3.55332 3.71146 3.77834 3.90875 3.96894 4.03823 4.10495 4.22329 4.30363 4.34662 4.37686 4.45585 4.47468 4.50192 4.54039 4.62223 4.66690 4.73081 4.77978 4.81042 4.85242 4.85482 5.02158 5.06512 5.20847 5.24618 5.37781 5.45980 5.54833 5.62833 5.76000 5.91848 6.20219 6.32063 6.80912 7.01122 7.06817 7.84177 8.00205 9.17086 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.003112 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.219711 B = 8996.514762 C =11125.860298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.066 3.934 4 C 0.120 3.880 5 N -0.268 5.268 6 N -0.295 5.295 7 C 0.005 3.995 8 C -0.175 4.175 9 C -0.053 4.053 10 C 0.597 3.403 11 O -0.581 6.581 12 N -0.602 5.602 13 C 0.115 3.885 14 C -0.099 4.099 15 H 0.072 0.928 16 C 0.167 3.833 17 N -0.762 5.762 18 C -0.228 4.228 19 H 0.064 0.936 20 C -0.060 4.060 21 N -0.982 5.982 22 Si 0.945 3.055 23 H -0.283 1.283 24 H -0.294 1.294 25 H -0.258 1.258 26 C -0.090 4.090 27 H 0.109 0.891 28 C -0.140 4.140 29 C 0.091 3.909 30 H 0.042 0.958 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.226 0.774 38 H 0.201 0.799 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.362 0.638 44 H 0.257 0.743 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.086 0.914 48 H 0.103 0.897 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 5.012 31.069 31.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.012 4.012 4 C 0.000 4.000 5 N -0.057 5.057 6 N -0.127 5.127 7 C -0.171 4.171 8 C -0.203 4.203 9 C -0.180 4.180 10 C 0.386 3.614 11 O -0.462 6.462 12 N -0.333 5.333 13 C -0.008 4.008 14 C -0.118 4.118 15 H 0.091 0.909 16 C 0.041 3.959 17 N -0.408 5.408 18 C -0.359 4.359 19 H 0.082 0.918 20 C -0.252 4.252 21 N -0.633 5.633 22 Si 0.773 3.227 23 H -0.209 1.209 24 H -0.221 1.221 25 H -0.183 1.183 26 C -0.109 4.109 27 H 0.127 0.873 28 C -0.198 4.198 29 C -0.030 4.030 30 H 0.060 0.940 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.123 0.877 36 H 0.136 0.864 37 H 0.243 0.757 38 H 0.218 0.782 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.195 0.805 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.105 0.895 48 H 0.121 0.879 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.661 3.510 31.623 31.824 hybrid contribution -0.422 -0.757 -1.303 1.565 sum -1.083 2.752 30.321 30.464 Atomic orbital electron populations 1.22996 0.78524 1.04511 1.00876 1.87763 1.22218 1.26708 1.95617 1.22492 0.92229 0.85621 1.00857 1.21776 0.92816 0.79140 1.06318 1.45530 1.43299 1.14804 1.02083 1.73233 1.17785 1.11312 1.10378 1.24345 1.01955 0.93926 0.96881 1.23120 1.03874 0.98425 0.94911 1.21339 1.11610 0.95704 0.89345 1.16828 0.78726 0.81916 0.83939 1.90803 1.45236 1.27928 1.82240 1.48432 1.50571 1.27792 1.06512 1.22461 0.98315 1.01879 0.78127 1.22407 0.95585 0.99453 0.94393 0.90939 1.20801 0.98392 0.90010 0.86687 1.42828 1.86830 1.06739 1.04356 1.19065 1.38143 0.94820 0.83865 0.91769 1.25394 1.02746 1.01606 0.95426 1.69857 1.57425 1.32874 1.03151 0.85557 0.78252 0.81152 0.77703 1.20909 1.22065 1.18290 1.22118 0.96486 0.99255 0.93069 0.87316 1.21842 0.93249 1.02430 1.02255 1.22966 0.93771 0.87031 0.99206 0.93953 0.87477 0.92387 0.91632 0.93870 0.87658 0.86432 0.75738 0.78210 0.92553 0.89709 0.94500 0.94490 0.80536 0.93362 0.93271 0.92792 0.89492 0.87893 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -9.10 10.70 -148.98 -1.59 -10.70 16 3 C 0.07 1.44 6.26 71.98 0.45 1.89 16 4 C 0.12 2.74 6.24 86.38 0.54 3.28 16 5 N -0.27 -6.13 3.35 -334.71 -1.12 -7.25 16 6 N -0.30 -6.03 11.90 -57.14 -0.68 -6.71 16 7 C 0.01 0.07 12.03 85.19 1.02 1.10 16 8 C -0.17 -2.54 9.34 22.66 0.21 -2.33 16 9 C -0.05 -1.19 6.90 40.78 0.28 -0.91 16 10 C 0.60 16.56 7.85 86.59 0.68 17.24 16 11 O -0.58 -20.60 14.87 -4.12 -0.06 -20.66 16 12 N -0.60 -14.19 3.29 -814.23 -2.68 -16.87 16 13 C 0.11 3.23 6.47 86.61 0.56 3.79 16 14 C -0.10 -2.58 2.60 -9.70 -0.03 -2.61 16 15 H 0.07 2.10 7.87 -2.39 -0.02 2.08 16 16 C 0.17 5.70 5.58 86.38 0.48 6.19 16 17 N -0.76 -34.92 5.33 -343.44 -1.83 -36.74 16 18 C -0.23 -12.87 10.47 84.04 0.88 -11.99 16 19 H 0.06 3.91 8.06 -2.91 -0.02 3.88 16 20 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 21 N -0.98 -63.27 13.97 21.65 0.30 -62.97 16 22 Si 0.95 46.94 27.74 68.60 1.90 48.84 16 23 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 25 H -0.26 -11.82 6.52 99.48 0.65 -11.17 16 26 C -0.09 -1.47 3.17 -9.90 -0.03 -1.50 16 27 H 0.11 1.50 7.85 -2.39 -0.02 1.48 16 28 C -0.14 -1.98 8.89 71.98 0.64 -1.34 16 29 C 0.09 1.28 4.89 86.53 0.42 1.70 16 30 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.11 2.85 6.18 -2.39 -0.01 2.83 16 36 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.23 1.21 8.06 -2.91 -0.02 1.19 16 38 H 0.20 1.49 5.10 -2.91 -0.01 1.47 16 39 H 0.06 1.94 7.81 -2.39 -0.02 1.92 16 40 H 0.08 2.34 7.95 -2.38 -0.02 2.32 16 41 H 0.04 1.24 8.00 -2.39 -0.02 1.22 16 42 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.36 16.44 5.53 -92.71 -0.51 15.93 16 44 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 45 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.10 0.94 7.87 -2.39 -0.02 0.92 16 49 H 0.11 1.09 5.42 -2.39 -0.01 1.08 16 Total: -1.00 -78.56 394.51 2.45 -76.10 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.38 Total: 23.87 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 7.83 Total: 13.08 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -6.01 Total: -130.54 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.66 Total: -31.36 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.90 Total: 48.84 kcal Total: -78.56 2.45 -76.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106298000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.901 kcal (2) G-P(sol) polarization free energy of solvation -78.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds