Wall clock time and date at job start Tue Mar 31 2020 19:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00039 * 2 1 4 4 C 1.52996 * 109.47216 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47520 * 180.02562 * 4 3 2 6 6 C 1.35031 * 124.89019 * 124.99780 * 5 4 3 7 7 C 1.35360 * 107.23089 * 180.02562 * 6 5 4 8 8 C 1.41512 * 105.50416 * 359.97438 * 7 6 5 9 9 C 1.47703 * 126.51664 * 179.97438 * 8 7 6 10 10 O 1.21568 * 120.00602 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99653 * 179.97438 * 9 8 7 12 12 C 1.48315 * 127.77039 * 179.89251 * 11 9 8 13 13 C 1.54385 * 104.53750 * 219.53004 * 12 11 9 14 14 H 1.08997 * 110.34548 * 95.18221 * 13 12 11 15 15 C 1.53004 * 110.34091 * 217.33303 * 13 12 11 16 16 N 1.46499 * 109.47198 * 292.12406 * 15 13 12 17 17 C 1.36939 * 119.99933 * 180.27608 * 16 15 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 15 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 15 20 20 N 1.31612 * 120.00054 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99751 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47517 * 89.99708 * 21 19 17 23 23 H 1.48502 * 109.46736 * 209.99481 * 21 19 17 24 24 H 1.48496 * 109.47375 * 329.99177 * 21 19 17 25 25 C 1.54283 * 105.05420 * 336.25517 * 13 12 11 26 26 H 1.08995 * 110.34709 * 240.97088 * 25 13 12 27 27 C 1.53002 * 110.34028 * 118.81593 * 25 13 12 28 28 C 1.48139 * 127.84024 * 359.97346 * 11 9 8 29 29 N 1.28476 * 124.87860 * 305.33233 * 5 4 3 30 30 H 1.08992 * 109.47030 * 60.00082 * 1 2 3 31 31 H 1.08999 * 109.46747 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46873 * 299.99993 * 1 2 3 33 33 H 1.08996 * 109.46971 * 59.99920 * 3 2 1 34 34 H 1.09002 * 109.47088 * 300.00089 * 3 2 1 35 35 H 1.09004 * 109.47131 * 59.99885 * 4 3 2 36 36 H 1.09005 * 109.47417 * 300.00063 * 4 3 2 37 37 H 1.08001 * 126.38359 * 0.05407 * 6 5 4 38 38 H 1.08000 * 127.24994 * 180.02562 * 7 6 5 39 39 H 1.08998 * 110.38541 * 100.79826 * 12 11 9 40 40 H 1.09004 * 110.50344 * 338.31646 * 12 11 9 41 41 H 1.09009 * 109.46730 * 172.12193 * 15 13 12 42 42 H 1.08998 * 109.46846 * 52.12738 * 15 13 12 43 43 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 44 44 H 0.96998 * 120.00381 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.47026 * 60.00792 * 27 25 13 46 46 H 1.09009 * 109.47071 * 179.97438 * 27 25 13 47 47 H 1.08992 * 109.47525 * 300.00076 * 27 25 13 48 48 H 1.09004 * 110.40600 * 21.62261 * 28 11 9 49 49 H 1.09000 * 110.51348 * 259.24364 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0262 2.9696 0.9072 7 6 5.3352 4.2441 0.5719 8 6 4.5724 4.5260 -0.5862 9 6 4.5570 5.7956 -1.3409 10 8 5.2482 6.7273 -0.9776 11 7 3.7765 5.9211 -2.4325 12 6 3.6265 7.1070 -3.3105 13 6 2.1203 7.1526 -3.6464 14 1 1.5998 7.8234 -2.9630 15 6 1.9115 7.6024 -5.0938 16 7 2.3106 9.0052 -5.2316 17 6 2.2059 9.6308 -6.4453 18 1 1.8333 9.0887 -7.3018 19 6 2.5786 10.9617 -6.5745 20 7 2.4784 11.5628 -7.7411 21 14 3.2235 11.8991 -5.0931 22 1 4.6992 11.7513 -5.0177 23 1 2.8763 13.3367 -5.2274 24 1 2.6078 11.3547 -3.8563 25 6 1.6238 5.7040 -3.4580 26 1 1.2294 5.3136 -4.3961 27 6 0.5527 5.6466 -2.3669 28 6 2.8736 4.9074 -3.0256 29 7 3.8731 3.4426 -0.8592 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8909 36 1 3.8575 0.6436 0.8891 37 1 5.4220 2.4134 1.7441 38 1 6.0204 4.9061 1.0805 39 1 4.2151 6.9833 -4.2196 40 1 3.9259 8.0128 -2.7832 41 1 0.8596 7.4961 -5.3591 42 1 2.5177 6.9853 -5.7571 43 1 2.6449 9.4922 -4.4622 44 1 2.7391 12.4927 -7.8315 45 1 -0.2898 6.2769 -2.6514 46 1 0.2120 4.6182 -2.2460 47 1 0.9725 6.0036 -1.4266 48 1 2.6069 4.1552 -2.2832 49 1 3.3426 4.4374 -3.8901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106406650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:05 Heat of formation + Delta-G solvation = 26.543108 kcal Electronic energy + Delta-G solvation = -29449.428082 eV Core-core repulsion = 25414.532527 eV Total energy + Delta-G solvation = -4034.895555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.98657 -39.88400 -38.57641 -37.82274 -34.79190 -34.37077 -32.72026 -31.50402 -31.08601 -30.11808 -29.24418 -27.05903 -26.49368 -25.94799 -24.30744 -23.08526 -22.14606 -21.63965 -20.94028 -19.82899 -19.45800 -17.93809 -17.54230 -17.11752 -16.79055 -16.54893 -16.19014 -15.79992 -15.39199 -15.13939 -14.56654 -14.39014 -14.32153 -14.03620 -13.76446 -13.52397 -13.49914 -13.28563 -13.07662 -12.69554 -12.60045 -12.39258 -12.22662 -12.17078 -11.93592 -11.82613 -11.51049 -11.39434 -10.93927 -10.86296 -10.57243 -10.48678 -10.35045 -10.23694 -10.07383 -10.01494 -9.58067 -9.54873 -9.38064 -8.86431 -8.59775 -7.20142 -5.73371 -3.08974 1.34388 1.82584 1.90818 2.95252 3.23801 3.37535 3.43403 3.47261 3.51085 3.92883 4.22707 4.30266 4.45471 4.54670 4.63461 4.65038 4.66347 4.76889 4.80536 4.89703 4.94512 5.00723 5.12240 5.14460 5.32646 5.37260 5.44895 5.47820 5.53174 5.57806 5.60165 5.75793 5.76552 5.84568 6.00160 6.03021 6.09108 6.14975 6.22417 6.26866 6.34912 6.43721 6.54899 6.65854 6.77940 7.50938 7.64398 8.02248 8.19755 8.45562 9.24586 9.97247 10.16667 11.44961 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.002626 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.131027 B =10660.349232 C =11969.836291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.286 5.286 6 C -0.014 4.014 7 C -0.178 4.178 8 C -0.002 4.002 9 C 0.618 3.382 10 O -0.535 6.535 11 N -0.608 5.608 12 C 0.113 3.887 13 C -0.108 4.108 14 H 0.081 0.919 15 C 0.168 3.832 16 N -0.757 5.757 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.935 5.935 21 Si 0.882 3.118 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.101 4.101 26 H 0.090 0.910 27 C -0.138 4.138 28 C 0.100 3.900 29 N -0.259 5.259 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.183 0.817 38 H 0.164 0.836 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.101 0.899 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.375 -27.576 20.556 34.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.075 5.075 6 C -0.156 4.156 7 C -0.206 4.206 8 C -0.162 4.162 9 C 0.405 3.595 10 O -0.410 6.410 11 N -0.341 5.341 12 C -0.009 4.009 13 C -0.128 4.128 14 H 0.100 0.900 15 C 0.041 3.959 16 N -0.402 5.402 17 C -0.374 4.374 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.583 5.583 21 Si 0.713 3.287 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.120 4.120 26 H 0.108 0.892 27 C -0.195 4.195 28 C -0.023 4.023 29 N -0.094 5.094 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.200 0.800 38 H 0.181 0.819 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.119 0.881 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.701 -27.779 19.849 34.184 hybrid contribution 0.806 1.276 1.530 2.149 sum -0.895 -26.503 21.379 34.062 Atomic orbital electron populations 1.22806 0.79631 1.03260 1.00603 1.87773 1.20821 1.26589 1.95641 1.22644 0.92089 0.85694 1.02391 1.21677 0.93111 0.78557 1.06240 1.45406 1.31201 1.11413 1.19459 1.22873 0.97962 0.96539 0.98268 1.21806 1.04558 0.95994 0.98204 1.21953 1.01178 0.93813 0.99271 1.16454 0.79328 0.85002 0.78736 1.90816 1.42591 1.39522 1.68083 1.48830 1.42588 1.16535 1.26151 1.22544 0.96453 0.88333 0.93547 1.22455 0.94860 0.95998 0.99479 0.90031 1.20703 0.97824 0.86262 0.91157 1.42743 1.79562 1.08294 1.09650 1.19040 1.36749 0.94186 0.87385 0.89210 1.24663 1.01394 0.96681 0.96360 1.69698 1.54151 1.11945 1.22456 0.86576 0.79248 0.79654 0.83259 1.20916 1.21749 1.20279 1.22112 0.95033 0.95284 0.99615 0.89172 1.21801 0.98274 1.01190 0.98284 1.22741 0.89287 0.91589 0.98710 1.73521 1.22542 0.97751 1.15632 0.93410 0.89058 0.93754 0.92460 0.91189 0.87819 0.86969 0.79980 0.81862 0.89982 0.89990 0.95137 0.95180 0.80618 0.93081 0.92162 0.92982 0.92978 0.88089 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.50 10.70 -35.23 -0.38 -2.88 16 3 C 0.05 0.29 6.04 37.16 0.22 0.51 16 4 C 0.12 0.62 6.77 -4.04 -0.03 0.59 16 5 N -0.29 -2.29 3.41 -61.33 -0.21 -2.50 16 6 C -0.01 -0.11 11.40 -17.17 -0.20 -0.30 16 7 C -0.18 -1.88 10.81 -39.36 -0.43 -2.30 16 8 C 0.00 -0.02 7.01 -82.76 -0.58 -0.60 16 9 C 0.62 9.95 7.92 -12.39 -0.10 9.85 16 10 O -0.53 -10.33 17.19 5.31 0.09 -10.24 16 11 N -0.61 -9.09 3.32 -170.33 -0.57 -9.65 16 12 C 0.11 1.85 6.34 -2.32 -0.01 1.84 16 13 C -0.11 -1.67 2.76 -89.22 -0.25 -1.91 16 14 H 0.08 1.32 7.71 -51.93 -0.40 0.92 16 15 C 0.17 3.16 5.37 -4.04 -0.02 3.14 16 16 N -0.76 -18.09 5.26 -59.90 -0.32 -18.40 16 17 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 19 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 20 N -0.93 -29.76 13.97 55.49 0.78 -28.99 16 21 Si 0.88 22.77 27.74 -169.99 -4.71 18.05 16 22 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 24 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 25 C -0.10 -1.21 3.31 -89.22 -0.30 -1.51 16 26 H 0.09 1.01 7.71 -51.93 -0.40 0.61 16 27 C -0.14 -1.48 8.90 37.16 0.33 -1.15 16 28 C 0.10 1.20 6.24 -2.41 -0.02 1.19 16 29 N -0.26 -2.83 8.73 33.42 0.29 -2.54 16 30 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.11 0.28 8.04 -51.93 -0.42 -0.14 16 37 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.08 1.39 7.78 -51.93 -0.40 0.99 16 40 H 0.08 1.48 7.89 -51.93 -0.41 1.07 16 41 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.03 0.57 8.02 -51.93 -0.42 0.15 16 43 H 0.36 8.56 5.42 -40.82 -0.22 8.34 16 44 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.10 1.13 5.24 -51.93 -0.27 0.86 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 400.69 15.07 6.04 6.04 Total: -1.00 -36.17 400.69 -7.52 -43.69 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.03 Total: 3.89 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -0.50 Total: 3.52 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.02 Total: -62.08 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.29 Total: -13.12 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.17 -7.52 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106406650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.231 kcal (2) G-P(sol) polarization free energy of solvation -36.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds