Wall clock time and date at job start Tue Mar 31 2020 19:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00039 * 2 1 4 4 C 1.52996 * 109.47216 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47520 * 180.02562 * 4 3 2 6 6 C 1.35031 * 124.89019 * 124.99780 * 5 4 3 7 7 C 1.35360 * 107.23089 * 180.02562 * 6 5 4 8 8 C 1.41512 * 105.50416 * 359.97438 * 7 6 5 9 9 C 1.47703 * 126.51664 * 179.97438 * 8 7 6 10 10 O 1.21568 * 120.00602 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99653 * 179.97438 * 9 8 7 12 12 C 1.48315 * 127.77039 * 179.89251 * 11 9 8 13 13 C 1.54385 * 104.53750 * 219.53004 * 12 11 9 14 14 H 1.08997 * 110.34548 * 95.18221 * 13 12 11 15 15 C 1.53004 * 110.34091 * 217.33303 * 13 12 11 16 16 N 1.46499 * 109.47198 * 292.12406 * 15 13 12 17 17 C 1.36939 * 119.99933 * 180.27608 * 16 15 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 15 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 15 20 20 N 1.31612 * 120.00054 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99751 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47517 * 89.99708 * 21 19 17 23 23 H 1.48502 * 109.46736 * 209.99481 * 21 19 17 24 24 H 1.48496 * 109.47375 * 329.99177 * 21 19 17 25 25 C 1.54283 * 105.05420 * 336.25517 * 13 12 11 26 26 H 1.08995 * 110.34709 * 240.97088 * 25 13 12 27 27 C 1.53002 * 110.34028 * 118.81593 * 25 13 12 28 28 C 1.48139 * 127.84024 * 359.97346 * 11 9 8 29 29 N 1.28476 * 124.87860 * 305.33233 * 5 4 3 30 30 H 1.08992 * 109.47030 * 60.00082 * 1 2 3 31 31 H 1.08999 * 109.46747 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46873 * 299.99993 * 1 2 3 33 33 H 1.08996 * 109.46971 * 59.99920 * 3 2 1 34 34 H 1.09002 * 109.47088 * 300.00089 * 3 2 1 35 35 H 1.09004 * 109.47131 * 59.99885 * 4 3 2 36 36 H 1.09005 * 109.47417 * 300.00063 * 4 3 2 37 37 H 1.08001 * 126.38359 * 0.05407 * 6 5 4 38 38 H 1.08000 * 127.24994 * 180.02562 * 7 6 5 39 39 H 1.08998 * 110.38541 * 100.79826 * 12 11 9 40 40 H 1.09004 * 110.50344 * 338.31646 * 12 11 9 41 41 H 1.09009 * 109.46730 * 172.12193 * 15 13 12 42 42 H 1.08998 * 109.46846 * 52.12738 * 15 13 12 43 43 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 44 44 H 0.96998 * 120.00381 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.47026 * 60.00792 * 27 25 13 46 46 H 1.09009 * 109.47071 * 179.97438 * 27 25 13 47 47 H 1.08992 * 109.47525 * 300.00076 * 27 25 13 48 48 H 1.09004 * 110.40600 * 21.62261 * 28 11 9 49 49 H 1.09000 * 110.51348 * 259.24364 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0262 2.9696 0.9072 7 6 5.3352 4.2441 0.5719 8 6 4.5724 4.5260 -0.5862 9 6 4.5570 5.7956 -1.3409 10 8 5.2482 6.7273 -0.9776 11 7 3.7765 5.9211 -2.4325 12 6 3.6265 7.1070 -3.3105 13 6 2.1203 7.1526 -3.6464 14 1 1.5998 7.8234 -2.9630 15 6 1.9115 7.6024 -5.0938 16 7 2.3106 9.0052 -5.2316 17 6 2.2059 9.6308 -6.4453 18 1 1.8333 9.0887 -7.3018 19 6 2.5786 10.9617 -6.5745 20 7 2.4784 11.5628 -7.7411 21 14 3.2235 11.8991 -5.0931 22 1 4.6992 11.7513 -5.0177 23 1 2.8763 13.3367 -5.2274 24 1 2.6078 11.3547 -3.8563 25 6 1.6238 5.7040 -3.4580 26 1 1.2294 5.3136 -4.3961 27 6 0.5527 5.6466 -2.3669 28 6 2.8736 4.9074 -3.0256 29 7 3.8731 3.4426 -0.8592 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8909 36 1 3.8575 0.6436 0.8891 37 1 5.4220 2.4134 1.7441 38 1 6.0204 4.9061 1.0805 39 1 4.2151 6.9833 -4.2196 40 1 3.9259 8.0128 -2.7832 41 1 0.8596 7.4961 -5.3591 42 1 2.5177 6.9853 -5.7571 43 1 2.6449 9.4922 -4.4622 44 1 2.7391 12.4927 -7.8315 45 1 -0.2898 6.2769 -2.6514 46 1 0.2120 4.6182 -2.2460 47 1 0.9725 6.0036 -1.4266 48 1 2.6069 4.1552 -2.2832 49 1 3.3426 4.4374 -3.8901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106406650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:04 Heat of formation + Delta-G solvation = 0.986452 kcal Electronic energy + Delta-G solvation = -29450.536302 eV Core-core repulsion = 25414.532527 eV Total energy + Delta-G solvation = -4036.003775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.70608 -41.07227 -39.15561 -38.91751 -36.60250 -35.00717 -34.12636 -33.25235 -31.88634 -31.11690 -30.34491 -27.84119 -27.46282 -27.03137 -25.35791 -24.43749 -23.10185 -22.60954 -22.06563 -21.06419 -20.46034 -19.61458 -18.48364 -18.00191 -17.52316 -17.10495 -17.02396 -16.82570 -16.54329 -16.31537 -15.95902 -15.57919 -15.47407 -14.99195 -14.84677 -14.73259 -14.50883 -14.24793 -14.17104 -13.99219 -13.85432 -13.57154 -13.34988 -12.99334 -12.96849 -12.77660 -12.61344 -12.55232 -12.29975 -12.12520 -11.96050 -11.83532 -11.76080 -11.62596 -11.41208 -11.24953 -10.98934 -10.74540 -10.32365 -10.12767 -9.77148 -9.30262 -8.03956 -5.36466 0.44743 1.14556 1.29545 1.36360 1.38867 1.44701 1.87973 2.29120 2.46210 2.78381 3.24801 3.28165 3.42786 3.56903 3.70838 3.79563 3.85243 3.93922 3.98155 4.11723 4.22457 4.25020 4.30015 4.44996 4.47871 4.51399 4.51972 4.64845 4.65199 4.68441 4.72803 4.76001 4.78804 4.83597 4.86365 4.87779 5.01194 5.03892 5.16398 5.23071 5.23467 5.37668 5.50614 5.75604 5.82678 6.04334 6.20416 6.43329 6.75823 7.05690 7.06797 7.83566 8.00831 9.17509 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.002626 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.131027 B =10660.349232 C =11969.836291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.276 5.276 6 C 0.013 3.987 7 C -0.203 4.203 8 C -0.034 4.034 9 C 0.611 3.389 10 O -0.582 6.582 11 N -0.608 5.608 12 C 0.112 3.888 13 C -0.096 4.096 14 H 0.076 0.924 15 C 0.167 3.833 16 N -0.761 5.761 17 C -0.229 4.229 18 H 0.063 0.937 19 C -0.061 4.061 20 N -0.982 5.982 21 Si 0.947 3.053 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.256 1.256 25 C -0.092 4.092 26 H 0.107 0.893 27 C -0.133 4.133 28 C 0.103 3.897 29 N -0.264 5.264 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.146 0.854 37 H 0.231 0.769 38 H 0.162 0.838 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.363 0.637 44 H 0.258 0.742 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.039 0.961 48 H 0.115 0.885 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -30.838 23.146 38.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.026 4.026 4 C 0.002 3.998 5 N -0.065 5.065 6 C -0.129 4.129 7 C -0.231 4.231 8 C -0.193 4.193 9 C 0.400 3.600 10 O -0.460 6.460 11 N -0.340 5.340 12 C -0.011 4.011 13 C -0.116 4.116 14 H 0.095 0.905 15 C 0.041 3.959 16 N -0.407 5.407 17 C -0.360 4.360 18 H 0.081 0.919 19 C -0.252 4.252 20 N -0.632 5.632 21 Si 0.774 3.226 22 H -0.209 1.209 23 H -0.220 1.220 24 H -0.181 1.181 25 C -0.112 4.112 26 H 0.125 0.875 27 C -0.190 4.190 28 C -0.019 4.019 29 N -0.101 5.101 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.164 0.836 37 H 0.247 0.753 38 H 0.179 0.821 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.196 0.804 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.058 0.942 48 H 0.133 0.867 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.249 -31.112 22.455 38.435 hybrid contribution 0.912 2.086 0.702 2.383 sum -1.337 -29.025 23.157 37.155 Atomic orbital electron populations 1.22956 0.78785 1.04209 1.00945 1.87750 1.21824 1.26797 1.95685 1.22589 0.92602 0.85500 1.01888 1.21995 0.92536 0.76976 1.08314 1.45750 1.30562 1.11697 1.18540 1.23473 0.95989 0.95270 0.98163 1.21993 1.05263 0.97773 0.98089 1.21620 1.03687 0.93406 1.00574 1.16984 0.78547 0.85775 0.78727 1.90767 1.44495 1.41403 1.69380 1.48897 1.42758 1.16553 1.25806 1.22394 0.97009 0.88399 0.93248 1.22293 0.94260 0.98234 0.96823 0.90545 1.20874 0.97872 0.83591 0.93562 1.42807 1.79579 1.10218 1.08059 1.19054 1.34660 0.94073 0.88242 0.91910 1.25414 1.02767 0.97926 0.99141 1.69857 1.56312 1.12258 1.24818 0.85532 0.78501 0.77961 0.80568 1.20868 1.21956 1.18098 1.22124 0.95443 0.92558 1.01075 0.87493 1.21760 0.97540 1.02791 0.96913 1.22886 0.88631 0.91165 0.99183 1.73407 1.22426 0.97699 1.16561 0.93323 0.87910 0.93172 0.92406 0.92329 0.87155 0.83580 0.75261 0.82080 0.90888 0.92225 0.94468 0.94854 0.80430 0.93343 0.92102 0.90451 0.94231 0.86728 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.42 16 2 O -0.40 -4.04 10.70 -148.98 -1.59 -5.63 16 3 C 0.05 0.45 6.04 71.98 0.43 0.88 16 4 C 0.12 0.73 6.77 86.38 0.58 1.32 16 5 N -0.28 -3.52 3.41 -347.95 -1.19 -4.70 16 6 C 0.01 0.15 11.40 83.54 0.95 1.10 16 7 C -0.20 -4.03 10.81 22.41 0.24 -3.79 16 8 C -0.03 -0.88 7.01 42.46 0.30 -0.58 16 9 C 0.61 20.10 7.92 86.74 0.69 20.79 16 10 O -0.58 -23.52 17.19 -3.93 -0.07 -23.59 16 11 N -0.61 -18.21 3.32 -811.08 -2.69 -20.91 16 12 C 0.11 3.73 6.34 86.50 0.55 4.28 16 13 C -0.10 -2.90 2.76 -9.89 -0.03 -2.93 16 14 H 0.08 2.41 7.71 -2.39 -0.02 2.39 16 15 C 0.17 6.18 5.37 86.38 0.46 6.64 16 16 N -0.76 -36.29 5.26 -343.44 -1.81 -38.10 16 17 C -0.23 -13.29 10.47 84.03 0.88 -12.41 16 18 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 19 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 20 N -0.98 -64.08 13.97 21.65 0.30 -63.78 16 21 Si 0.95 47.67 27.74 68.60 1.90 49.57 16 22 H -0.28 -14.11 7.11 99.48 0.71 -13.41 16 23 H -0.29 -14.77 7.11 99.48 0.71 -14.07 16 24 H -0.26 -11.88 6.52 99.48 0.65 -11.23 16 25 C -0.09 -2.04 3.31 -9.89 -0.03 -2.08 16 26 H 0.11 2.07 7.71 -2.39 -0.02 2.05 16 27 C -0.13 -2.53 8.90 71.98 0.64 -1.89 16 28 C 0.10 2.34 6.24 86.54 0.54 2.88 16 29 N -0.26 -5.24 8.73 -48.18 -0.42 -5.66 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.63 8.08 -2.39 -0.02 0.62 16 35 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.15 -0.04 8.04 -2.38 -0.02 -0.06 16 37 H 0.23 0.19 8.06 -2.91 -0.02 0.16 16 38 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 39 H 0.07 2.53 7.78 -2.39 -0.02 2.51 16 40 H 0.06 2.23 7.89 -2.38 -0.02 2.21 16 41 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.03 1.24 8.02 -2.39 -0.02 1.22 16 43 H 0.36 17.03 5.42 -92.71 -0.50 16.53 16 44 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.11 2.33 5.24 -2.38 -0.01 2.31 16 49 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -81.57 400.69 2.74 -78.83 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.38 Total: 21.55 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 7.93 Total: 12.42 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -5.80 Total: -133.15 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -1.66 Total: -29.22 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.90 Total: 49.57 kcal Total: -81.57 2.74 -78.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106406650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.814 kcal (2) G-P(sol) polarization free energy of solvation -81.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds