Wall clock time and date at job start Tue Mar 31 2020 19:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00067 * 2 1 4 4 H 1.09001 * 109.46897 * 29.99646 * 3 2 1 5 5 C 1.50693 * 109.47170 * 150.00007 * 3 2 1 6 6 O 1.21279 * 120.00526 * 5.00298 * 5 3 2 7 7 N 1.34778 * 119.99834 * 184.99815 * 5 3 2 8 8 C 1.48120 * 127.03130 * 179.70952 * 7 5 3 9 9 C 1.54602 * 103.42047 * 219.28580 * 8 7 5 10 10 H 1.08996 * 110.57494 * 81.17358 * 9 8 7 11 11 C 1.53004 * 110.98802 * 204.37229 * 9 8 7 12 12 N 1.46499 * 109.47208 * 288.65567 * 11 9 8 13 13 C 1.36933 * 119.99855 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00255 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99879 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99717 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00005 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47000 * 89.99817 * 17 15 13 19 19 H 1.48501 * 109.46903 * 209.99846 * 17 15 13 20 20 H 1.48495 * 109.47049 * 329.99926 * 17 15 13 21 21 C 1.54615 * 102.91013 * 322.86877 * 9 8 7 22 22 H 1.08999 * 110.32583 * 262.80084 * 21 9 8 23 23 C 1.53001 * 110.40895 * 140.63888 * 21 9 8 24 24 C 1.47487 * 127.03726 * 0.02568 * 7 5 3 25 25 C 1.50702 * 109.47077 * 270.00075 * 3 2 1 26 26 C 1.39876 * 126.03941 * 325.02756 * 25 3 2 27 27 N 1.30834 * 108.20073 * 180.24343 * 26 25 3 28 28 N 1.40084 * 108.20770 * 359.58566 * 27 26 25 29 29 C 1.46500 * 126.03708 * 180.17238 * 28 27 26 30 30 C 1.34947 * 107.92204 * 0.41501 * 28 27 26 31 31 H 1.09005 * 109.47150 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47144 * 300.00018 * 1 2 3 33 33 H 1.08998 * 109.47421 * 60.00556 * 1 2 3 34 34 H 1.08997 * 110.66419 * 337.77385 * 8 7 5 35 35 H 1.09002 * 110.66335 * 100.88738 * 8 7 5 36 36 H 1.09003 * 109.46752 * 48.65480 * 11 9 8 37 37 H 1.08996 * 109.46939 * 168.65166 * 11 9 8 38 38 H 0.97001 * 119.99947 * 359.97438 * 12 11 9 39 39 H 0.97002 * 119.99754 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.47172 * 302.86937 * 23 21 9 41 41 H 1.08995 * 109.47601 * 62.87162 * 23 21 9 42 42 H 1.09003 * 109.46980 * 182.87277 * 23 21 9 43 43 H 1.09000 * 109.91064 * 273.87954 * 24 7 5 44 44 H 1.08998 * 109.90886 * 34.96213 * 24 7 5 45 45 H 1.08002 * 125.89548 * 359.97072 * 26 25 3 46 46 H 1.08995 * 109.47266 * 270.28769 * 29 28 27 47 47 H 1.08996 * 109.47009 * 30.29267 * 29 28 27 48 48 H 1.09011 * 109.46832 * 150.28859 * 29 28 27 49 49 H 1.08009 * 126.12504 * 179.78630 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 3.3385 1.2639 0.7104 6 8 3.7897 0.2045 1.0913 7 7 4.0253 2.4040 0.9223 8 6 5.3328 2.5442 1.6041 9 6 5.1707 3.8427 2.4275 10 1 4.6360 3.6432 3.3561 11 6 6.5304 4.4829 2.7144 12 7 7.2562 3.6699 3.6934 13 6 8.5056 4.0487 4.1062 14 1 8.9562 4.9466 3.7098 15 6 9.1931 3.2786 5.0342 16 7 10.3939 3.6430 5.4314 17 14 8.4141 1.7251 5.7193 18 1 8.7775 0.5692 4.8609 19 1 8.9081 1.4911 7.1000 20 1 6.9374 1.8803 5.7415 21 6 4.3285 4.7415 1.4929 22 1 4.9747 5.4226 0.9392 23 6 3.2946 5.5294 2.2997 24 6 3.6258 3.7680 0.5285 25 6 2.2145 1.7643 -1.4208 26 6 2.5629 0.9530 -2.5057 27 7 2.6529 1.7094 -3.5694 28 7 2.3550 3.0264 -3.1965 29 6 2.3369 4.1907 -4.0854 30 6 2.0928 3.0339 -1.8727 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 5.5174 1.6939 2.2606 35 1 6.1368 2.6508 0.8759 36 1 7.1069 4.5405 1.7911 37 1 6.3825 5.4863 3.1136 38 1 6.8516 2.8632 4.0491 39 1 10.8741 3.1050 6.0802 40 1 2.6639 4.8367 2.8570 41 1 3.8064 6.1946 2.9951 42 1 2.6766 6.1182 1.6217 43 1 3.9424 3.9665 -0.4955 44 1 2.5443 3.8761 0.6100 45 1 2.7329 -0.1130 -2.4703 46 1 3.3275 4.6447 -4.1097 47 1 2.0565 3.8761 -5.0906 48 1 1.6130 4.9178 -3.7171 49 1 1.8320 3.8985 -1.2802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106481530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:29 Heat of formation + Delta-G solvation = 28.163563 kcal Electronic energy + Delta-G solvation = -30191.130110 eV Core-core repulsion = 26156.304823 eV Total energy + Delta-G solvation = -4034.825287 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.73846 -40.11643 -38.52033 -37.21784 -34.87289 -33.72925 -32.94593 -31.76020 -31.41624 -29.52333 -28.68858 -26.83230 -26.63706 -26.11785 -24.79071 -22.89569 -21.55787 -21.27853 -20.94272 -20.08403 -19.38400 -17.92976 -17.52429 -17.04320 -16.64579 -16.03523 -15.73885 -15.48862 -15.34614 -14.72085 -14.59258 -14.45014 -14.14095 -13.85968 -13.72596 -13.54931 -13.32684 -13.19666 -13.06476 -12.88058 -12.76736 -12.59824 -12.41238 -12.11090 -12.05973 -11.60847 -11.53403 -11.43252 -11.02676 -10.92235 -10.65652 -10.56281 -10.41361 -10.26275 -10.09503 -9.78779 -9.73195 -9.57267 -8.89064 -8.73862 -8.66636 -7.22989 -5.75659 -3.11574 1.47189 2.12239 2.34600 2.64405 2.69660 3.42186 3.46212 3.50439 3.71256 4.13636 4.30438 4.38956 4.46196 4.59132 4.62121 4.67114 4.71791 4.75360 4.81017 4.95509 4.99369 5.10123 5.12361 5.14022 5.27429 5.35656 5.39680 5.41768 5.42157 5.53023 5.54347 5.61586 5.67310 5.70381 5.89765 5.95906 6.06148 6.07171 6.16791 6.27694 6.35011 6.55897 6.59654 6.71059 6.80440 7.34570 7.52545 7.99373 8.17865 8.43227 9.21973 9.94652 10.13634 11.42612 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.003066 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.915927 B = 9128.833016 C = 9952.382079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.162 3.838 4 H 0.087 0.913 5 C 0.538 3.462 6 O -0.517 6.517 7 N -0.616 5.616 8 C 0.114 3.886 9 C -0.107 4.107 10 H 0.084 0.916 11 C 0.170 3.830 12 N -0.756 5.756 13 C -0.246 4.246 14 H 0.090 0.910 15 C 0.006 3.994 16 N -0.934 5.934 17 Si 0.882 3.118 18 H -0.282 1.282 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.101 4.101 22 H 0.090 0.910 23 C -0.142 4.142 24 C 0.106 3.894 25 C -0.266 4.266 26 C 0.082 3.918 27 N -0.296 5.296 28 N -0.373 5.373 29 C 0.100 3.900 30 C 0.070 3.930 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.032 0.968 38 H 0.361 0.639 39 H 0.260 0.740 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.186 0.814 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.643 3.478 -17.804 31.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.099 3.901 4 H 0.105 0.895 5 C 0.325 3.675 6 O -0.392 6.392 7 N -0.351 5.351 8 C -0.008 4.008 9 C -0.126 4.126 10 H 0.102 0.898 11 C 0.042 3.958 12 N -0.402 5.402 13 C -0.375 4.375 14 H 0.108 0.892 15 C -0.190 4.190 16 N -0.582 5.582 17 Si 0.712 3.288 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.120 4.120 22 H 0.108 0.892 23 C -0.199 4.199 24 C -0.017 4.017 25 C -0.278 4.278 26 C -0.105 4.105 27 N -0.117 5.117 28 N -0.155 5.155 29 C -0.041 4.041 30 C -0.078 4.078 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.194 0.806 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.203 0.797 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -24.894 2.921 -18.980 31.440 hybrid contribution -0.777 -0.747 1.406 1.771 sum -25.671 2.174 -17.574 31.186 Atomic orbital electron populations 1.22861 0.80592 1.03178 0.99951 1.88036 1.19654 1.24538 1.94614 1.19815 0.93172 0.86508 0.90641 0.89533 1.19828 0.85667 0.82758 0.79293 1.90747 1.69103 1.28838 1.50481 1.48678 1.22071 1.05967 1.58412 1.22523 0.83883 0.98681 0.95672 1.22574 0.97805 0.94217 0.98045 0.89808 1.20595 0.88415 0.93908 0.92840 1.42727 1.18305 1.28504 1.50667 1.19027 0.90692 1.08254 1.19566 0.89214 1.24662 0.96272 0.98669 0.99383 1.69703 1.12541 1.40182 1.35765 0.86581 0.78817 0.84647 0.78706 1.20865 1.21696 1.20304 1.22103 0.97158 0.96504 0.96263 0.89212 1.21844 0.98254 0.99930 0.99911 1.22381 0.99076 0.81914 0.98350 1.20163 1.17785 0.93305 0.96579 1.23749 0.97127 1.00412 0.89191 1.77452 1.23448 0.87251 1.23509 1.48529 1.53073 1.07387 1.06483 1.21907 1.03531 0.84131 0.94541 1.22359 1.01011 0.98831 0.85577 0.89119 0.93896 0.93873 0.89653 0.90458 0.95260 0.95065 0.80582 0.93041 0.92619 0.91637 0.92724 0.91622 0.91309 0.79669 0.90412 0.89165 0.89343 0.80673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.81 101.05 1.09 1.34 16 2 O -0.35 -4.31 9.60 -55.09 -0.53 -4.83 16 3 C 0.16 1.79 2.35 -29.04 -0.07 1.73 16 4 H 0.09 0.72 7.33 -51.93 -0.38 0.34 16 5 C 0.54 8.03 7.26 -10.99 -0.08 7.95 16 6 O -0.52 -10.17 16.72 -14.30 -0.24 -10.41 16 7 N -0.62 -8.16 3.29 -169.98 -0.56 -8.72 16 8 C 0.11 1.76 6.44 -2.31 -0.01 1.75 16 9 C -0.11 -1.52 2.60 -88.93 -0.23 -1.75 16 10 H 0.08 1.27 7.86 -51.93 -0.41 0.86 16 11 C 0.17 3.08 5.59 -4.04 -0.02 3.06 16 12 N -0.76 -17.80 5.33 -59.91 -0.32 -18.12 16 13 C -0.25 -6.96 10.47 -15.06 -0.16 -7.11 16 14 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 15 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 16 N -0.93 -29.62 13.97 55.49 0.78 -28.84 16 17 Si 0.88 22.71 27.74 -169.99 -4.71 17.99 16 18 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 20 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 21 C -0.10 -1.01 3.17 -89.25 -0.28 -1.29 16 22 H 0.09 0.85 7.85 -51.93 -0.41 0.44 16 23 C -0.14 -1.18 8.90 37.16 0.33 -0.85 16 24 C 0.11 0.97 4.60 -2.98 -0.01 0.96 16 25 C -0.27 -2.70 4.74 -105.05 -0.50 -3.20 16 26 C 0.08 0.94 11.63 -17.36 -0.20 0.74 16 27 N -0.30 -3.44 12.58 30.63 0.39 -3.05 16 28 N -0.37 -3.17 4.01 -68.16 -0.27 -3.45 16 29 C 0.10 0.42 11.47 59.85 0.69 1.11 16 30 C 0.07 0.53 9.00 -17.23 -0.16 0.38 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 1.54 7.85 -51.93 -0.41 1.13 16 35 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 36 H 0.03 0.54 8.00 -51.93 -0.42 0.12 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.36 8.48 5.53 -40.82 -0.23 8.26 16 39 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.56 6.96 -51.93 -0.36 0.19 16 44 H 0.07 0.45 5.86 -51.93 -0.30 0.15 16 45 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.09 0.13 8.14 -51.92 -0.42 -0.29 16 49 H 0.18 0.73 6.61 -52.48 -0.35 0.38 16 LS Contribution 396.08 15.07 5.97 5.97 Total: -1.00 -38.04 396.08 -7.13 -45.17 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.91 Total: 3.41 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 0.29 Total: 4.89 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.01 Total: -62.18 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.77 Total: -15.24 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 17.99 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.04 -7.13 -45.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106481530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.330 kcal (2) G-P(sol) polarization free energy of solvation -38.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds