Wall clock time and date at job start Tue Mar 31 2020 19:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00067 * 2 1 4 4 H 1.09001 * 109.46897 * 29.99646 * 3 2 1 5 5 C 1.50693 * 109.47170 * 150.00007 * 3 2 1 6 6 O 1.21279 * 120.00526 * 5.00298 * 5 3 2 7 7 N 1.34778 * 119.99834 * 184.99815 * 5 3 2 8 8 C 1.48120 * 127.03130 * 179.70952 * 7 5 3 9 9 C 1.54602 * 103.42047 * 219.28580 * 8 7 5 10 10 H 1.08996 * 110.57494 * 81.17358 * 9 8 7 11 11 C 1.53004 * 110.98802 * 204.37229 * 9 8 7 12 12 N 1.46499 * 109.47208 * 288.65567 * 11 9 8 13 13 C 1.36933 * 119.99855 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00255 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99879 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99717 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00005 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47000 * 89.99817 * 17 15 13 19 19 H 1.48501 * 109.46903 * 209.99846 * 17 15 13 20 20 H 1.48495 * 109.47049 * 329.99926 * 17 15 13 21 21 C 1.54615 * 102.91013 * 322.86877 * 9 8 7 22 22 H 1.08999 * 110.32583 * 262.80084 * 21 9 8 23 23 C 1.53001 * 110.40895 * 140.63888 * 21 9 8 24 24 C 1.47487 * 127.03726 * 0.02568 * 7 5 3 25 25 C 1.50702 * 109.47077 * 270.00075 * 3 2 1 26 26 C 1.39876 * 126.03941 * 325.02756 * 25 3 2 27 27 N 1.30834 * 108.20073 * 180.24343 * 26 25 3 28 28 N 1.40084 * 108.20770 * 359.58566 * 27 26 25 29 29 C 1.46500 * 126.03708 * 180.17238 * 28 27 26 30 30 C 1.34947 * 107.92204 * 0.41501 * 28 27 26 31 31 H 1.09005 * 109.47150 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47144 * 300.00018 * 1 2 3 33 33 H 1.08998 * 109.47421 * 60.00556 * 1 2 3 34 34 H 1.08997 * 110.66419 * 337.77385 * 8 7 5 35 35 H 1.09002 * 110.66335 * 100.88738 * 8 7 5 36 36 H 1.09003 * 109.46752 * 48.65480 * 11 9 8 37 37 H 1.08996 * 109.46939 * 168.65166 * 11 9 8 38 38 H 0.97001 * 119.99947 * 359.97438 * 12 11 9 39 39 H 0.97002 * 119.99754 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.47172 * 302.86937 * 23 21 9 41 41 H 1.08995 * 109.47601 * 62.87162 * 23 21 9 42 42 H 1.09003 * 109.46980 * 182.87277 * 23 21 9 43 43 H 1.09000 * 109.91064 * 273.87954 * 24 7 5 44 44 H 1.08998 * 109.90886 * 34.96213 * 24 7 5 45 45 H 1.08002 * 125.89548 * 359.97072 * 26 25 3 46 46 H 1.08995 * 109.47266 * 270.28769 * 29 28 27 47 47 H 1.08996 * 109.47009 * 30.29267 * 29 28 27 48 48 H 1.09011 * 109.46832 * 150.28859 * 29 28 27 49 49 H 1.08009 * 126.12504 * 179.78630 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 3.3385 1.2639 0.7104 6 8 3.7897 0.2045 1.0913 7 7 4.0253 2.4040 0.9223 8 6 5.3328 2.5442 1.6041 9 6 5.1707 3.8427 2.4275 10 1 4.6360 3.6432 3.3561 11 6 6.5304 4.4829 2.7144 12 7 7.2562 3.6699 3.6934 13 6 8.5056 4.0487 4.1062 14 1 8.9562 4.9466 3.7098 15 6 9.1931 3.2786 5.0342 16 7 10.3939 3.6430 5.4314 17 14 8.4141 1.7251 5.7193 18 1 8.7775 0.5692 4.8609 19 1 8.9081 1.4911 7.1000 20 1 6.9374 1.8803 5.7415 21 6 4.3285 4.7415 1.4929 22 1 4.9747 5.4226 0.9392 23 6 3.2946 5.5294 2.2997 24 6 3.6258 3.7680 0.5285 25 6 2.2145 1.7643 -1.4208 26 6 2.5629 0.9530 -2.5057 27 7 2.6529 1.7094 -3.5694 28 7 2.3550 3.0264 -3.1965 29 6 2.3369 4.1907 -4.0854 30 6 2.0928 3.0339 -1.8727 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 5.5174 1.6939 2.2606 35 1 6.1368 2.6508 0.8759 36 1 7.1069 4.5405 1.7911 37 1 6.3825 5.4863 3.1136 38 1 6.8516 2.8632 4.0491 39 1 10.8741 3.1050 6.0802 40 1 2.6639 4.8367 2.8570 41 1 3.8064 6.1946 2.9951 42 1 2.6766 6.1182 1.6217 43 1 3.9424 3.9665 -0.4955 44 1 2.5443 3.8761 0.6100 45 1 2.7329 -0.1130 -2.4703 46 1 3.3275 4.6447 -4.1097 47 1 2.0565 3.8761 -5.0906 48 1 1.6130 4.9178 -3.7171 49 1 1.8320 3.8985 -1.2802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106481530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:28 Heat of formation + Delta-G solvation = 0.274248 kcal Electronic energy + Delta-G solvation = -30192.339481 eV Core-core repulsion = 26156.304823 eV Total energy + Delta-G solvation = -4036.034658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.44298 -41.12242 -39.49120 -38.21548 -36.61933 -34.47774 -34.07579 -33.27256 -32.45511 -30.86172 -29.40757 -27.50949 -27.36796 -27.24390 -25.85858 -24.49081 -22.66374 -22.13191 -21.79836 -21.17071 -20.36383 -19.57738 -18.61118 -17.92052 -17.51182 -17.07190 -16.62925 -16.34556 -16.28190 -16.19517 -15.69578 -15.46533 -15.28277 -15.03880 -14.75877 -14.71019 -14.34765 -14.02220 -13.96236 -13.76540 -13.66435 -13.54919 -13.45268 -13.24429 -13.06589 -12.92642 -12.82169 -12.49996 -12.28164 -12.10268 -11.87845 -11.78148 -11.68853 -11.54347 -11.51534 -11.15633 -11.00123 -10.67746 -10.40880 -9.74158 -9.45115 -9.30593 -8.05281 -5.37332 0.86116 1.34651 1.38175 1.40183 1.43135 1.64080 1.68231 1.79154 2.44920 2.94289 3.27040 3.36960 3.55451 3.56314 3.68400 3.76712 3.89766 4.00601 4.00923 4.21399 4.26362 4.31910 4.35027 4.48755 4.49779 4.54502 4.55226 4.60922 4.65433 4.76683 4.79885 4.80914 4.83333 4.85835 4.89036 4.90361 5.05831 5.08149 5.22785 5.25564 5.40683 5.51487 5.57314 5.74828 6.04484 6.13144 6.19603 6.52507 6.65514 7.06079 7.10115 7.83529 7.99646 9.16314 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.003066 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.915927 B = 9128.833016 C = 9952.382079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.387 6.387 3 C 0.173 3.827 4 H 0.124 0.876 5 C 0.528 3.472 6 O -0.581 6.581 7 N -0.612 5.612 8 C 0.111 3.889 9 C -0.097 4.097 10 H 0.077 0.923 11 C 0.167 3.833 12 N -0.762 5.762 13 C -0.229 4.229 14 H 0.064 0.936 15 C -0.060 4.060 16 N -0.982 5.982 17 Si 0.945 3.055 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.256 1.256 21 C -0.091 4.091 22 H 0.101 0.899 23 C -0.139 4.139 24 C 0.104 3.896 25 C -0.284 4.284 26 C 0.060 3.940 27 N -0.332 5.332 28 N -0.370 5.370 29 C 0.089 3.911 30 C 0.092 3.908 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.039 0.961 38 H 0.362 0.638 39 H 0.258 0.742 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.171 0.829 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.126 0.874 49 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.462 5.912 -18.950 35.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.305 6.305 3 C 0.111 3.889 4 H 0.141 0.859 5 C 0.317 3.683 6 O -0.460 6.460 7 N -0.346 5.346 8 C -0.011 4.011 9 C -0.116 4.116 10 H 0.096 0.904 11 C 0.041 3.959 12 N -0.407 5.407 13 C -0.360 4.360 14 H 0.082 0.918 15 C -0.251 4.251 16 N -0.633 5.633 17 Si 0.773 3.227 18 H -0.212 1.212 19 H -0.218 1.218 20 H -0.181 1.181 21 C -0.110 4.110 22 H 0.120 0.880 23 C -0.197 4.197 24 C -0.018 4.018 25 C -0.297 4.297 26 C -0.125 4.125 27 N -0.154 5.154 28 N -0.151 5.151 29 C -0.050 4.050 30 C -0.056 4.056 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.195 0.805 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.128 0.872 45 H 0.188 0.812 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.144 0.856 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -28.780 5.413 -20.186 35.568 hybrid contribution 0.433 -1.383 1.637 2.186 sum -28.348 4.030 -18.549 34.116 Atomic orbital electron populations 1.23037 0.78522 1.04053 1.01249 1.87998 1.21985 1.25708 1.94810 1.19754 0.91187 0.86958 0.91007 0.85852 1.20770 0.86932 0.82085 0.78540 1.90707 1.70893 1.31238 1.53190 1.48725 1.20859 1.07524 1.57444 1.22341 0.85373 0.98053 0.95383 1.22405 0.96160 0.94390 0.98683 0.90438 1.20798 0.90007 0.93772 0.91332 1.42827 1.17159 1.29175 1.51583 1.19065 0.92120 1.06696 1.18141 0.91830 1.25392 0.96944 1.02149 1.00641 1.69858 1.14329 1.41897 1.37185 0.85557 0.79100 0.80491 0.77546 1.21225 1.21836 1.18077 1.22110 0.97188 0.96166 0.95531 0.88046 1.21850 0.97880 0.99765 1.00167 1.22706 1.01494 0.78878 0.98715 1.20119 1.19694 0.94261 0.95604 1.23722 0.98088 1.00371 0.90313 1.77386 1.24817 0.89102 1.24081 1.48893 1.51634 1.07112 1.07501 1.22304 1.05203 0.83272 0.94230 1.22950 0.98397 0.98999 0.85301 0.88700 0.92278 0.92659 0.93203 0.91338 0.95209 0.94294 0.80523 0.93335 0.92681 0.92872 0.89101 0.89961 0.87243 0.81159 0.89643 0.89346 0.85561 0.76065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.81 113.37 1.23 1.60 16 2 O -0.39 -9.22 9.60 -129.99 -1.25 -10.46 16 3 C 0.17 3.45 2.35 29.10 0.07 3.52 16 4 H 0.12 1.46 7.33 -2.39 -0.02 1.44 16 5 C 0.53 15.41 7.26 87.65 0.64 16.04 16 6 O -0.58 -23.78 16.72 15.96 0.27 -23.52 16 7 N -0.61 -15.08 3.29 -810.09 -2.67 -17.75 16 8 C 0.11 3.43 6.44 86.61 0.56 3.98 16 9 C -0.10 -2.59 2.60 -9.70 -0.03 -2.61 16 10 H 0.08 2.21 7.86 -2.39 -0.02 2.19 16 11 C 0.17 5.89 5.59 86.38 0.48 6.37 16 12 N -0.76 -35.80 5.33 -343.45 -1.83 -37.63 16 13 C -0.23 -13.18 10.47 84.03 0.88 -12.30 16 14 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 15 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 16 N -0.98 -63.94 13.97 21.65 0.30 -63.64 16 17 Si 0.94 47.75 27.74 68.60 1.90 49.65 16 18 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 19 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 20 H -0.26 -11.88 6.52 99.48 0.65 -11.23 16 21 C -0.09 -1.43 3.17 -9.91 -0.03 -1.46 16 22 H 0.10 1.43 7.85 -2.39 -0.02 1.42 16 23 C -0.14 -1.61 8.90 71.98 0.64 -0.97 16 24 C 0.10 1.39 4.60 86.53 0.40 1.79 16 25 C -0.28 -5.06 4.74 -20.14 -0.10 -5.16 16 26 C 0.06 1.38 11.63 85.24 0.99 2.38 16 27 N -0.33 -7.37 12.58 -57.02 -0.72 -8.09 16 28 N -0.37 -5.00 4.01 -369.56 -1.48 -6.49 16 29 C 0.09 0.39 11.47 127.77 1.47 1.85 16 30 C 0.09 0.97 9.00 83.54 0.75 1.72 16 31 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.06 0.62 8.08 -2.39 -0.02 0.60 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 1.87 7.85 -2.39 -0.02 1.85 16 35 H 0.07 2.19 7.95 -2.39 -0.02 2.17 16 36 H 0.03 1.07 8.00 -2.39 -0.02 1.05 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.36 16.88 5.53 -92.71 -0.51 16.37 16 39 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 40 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.08 0.92 6.96 -2.39 -0.02 0.90 16 44 H 0.11 0.64 5.86 -2.39 -0.01 0.63 16 45 H 0.17 4.13 8.06 -2.91 -0.02 4.10 16 46 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.13 -0.38 8.14 -2.38 -0.02 -0.40 16 49 H 0.22 0.07 6.61 -2.91 -0.02 0.05 16 Total: -1.00 -89.48 396.08 3.32 -86.16 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.38 Total: 18.14 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 8.41 Total: 13.64 kcal Atomic # 7 Polarization: -127.21 SS G_CDS: -6.39 Total: -133.60 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.98 Total: -33.98 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.90 Total: 49.65 kcal Total: -89.48 3.32 -86.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106481530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.431 kcal (2) G-P(sol) polarization free energy of solvation -89.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds