Wall clock time and date at job start Tue Mar 31 2020 19:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99374 * 2 1 4 4 C 1.53009 * 109.46938 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.46963 * 180.02562 * 4 3 2 6 6 C 1.34260 * 125.75295 * 124.99916 * 5 4 3 7 7 C 1.38048 * 107.41549 * 179.73345 * 6 5 4 8 8 C 1.47427 * 126.41310 * 180.26179 * 7 6 5 9 9 O 1.21605 * 120.00487 * 7.06635 * 8 7 6 10 10 N 1.34776 * 119.99924 * 187.06218 * 8 7 6 11 11 C 1.48123 * 127.03404 * 185.33201 * 10 8 7 12 12 C 1.54597 * 103.42081 * 219.28776 * 11 10 8 13 13 H 1.08999 * 110.57753 * 81.16675 * 12 11 10 14 14 C 1.53002 * 110.99000 * 204.37203 * 12 11 10 15 15 N 1.46500 * 109.46808 * 288.65218 * 14 12 11 16 16 C 1.36944 * 119.99480 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00111 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99273 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00449 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99641 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46791 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47094 * 119.99724 * 20 18 16 23 23 H 1.48499 * 109.46886 * 240.00394 * 20 18 16 24 24 C 1.54624 * 102.91001 * 322.86411 * 12 11 10 25 25 H 1.08997 * 110.32787 * 262.80731 * 24 12 11 26 26 C 1.53005 * 110.41020 * 140.63945 * 24 12 11 27 27 C 1.47489 * 127.03543 * 5.64548 * 10 8 7 28 28 C 1.41284 * 107.16937 * 0.26416 * 7 6 5 29 29 N 1.30440 * 108.02493 * 359.97438 * 28 7 6 30 30 H 1.09000 * 109.47029 * 299.98991 * 1 2 3 31 31 H 1.08991 * 109.47707 * 60.00032 * 1 2 3 32 32 H 1.09000 * 109.46702 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47518 * 60.00713 * 3 2 1 34 34 H 1.09000 * 109.47724 * 300.00041 * 3 2 1 35 35 H 1.08994 * 109.47200 * 60.00112 * 4 3 2 36 36 H 1.09000 * 109.46773 * 299.99767 * 4 3 2 37 37 H 1.07997 * 126.29602 * 359.97438 * 6 5 4 38 38 H 1.08998 * 110.65815 * 337.76470 * 11 10 8 39 39 H 1.08990 * 110.66376 * 100.88574 * 11 10 8 40 40 H 1.09002 * 109.46997 * 48.64617 * 14 12 11 41 41 H 1.08993 * 109.47506 * 168.64831 * 14 12 11 42 42 H 0.96996 * 119.99918 * 359.97438 * 15 14 12 43 43 H 0.97001 * 119.99998 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.46900 * 302.86800 * 26 24 12 45 45 H 1.08991 * 109.47362 * 62.87578 * 26 24 12 46 46 H 1.09000 * 109.46603 * 182.87431 * 26 24 12 47 47 H 1.08999 * 109.90997 * 273.87741 * 27 10 8 48 48 H 1.08998 * 109.91105 * 34.96156 * 27 10 8 49 49 H 1.08001 * 125.98575 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1311 2.5232 0.0000 6 6 5.0214 2.9852 0.8925 7 6 5.3311 4.2818 0.5339 8 6 6.2725 5.1803 1.2267 9 8 6.9582 4.7573 2.1375 10 7 6.3732 6.4706 0.8505 11 6 7.3358 7.4753 1.3583 12 6 6.4900 8.7658 1.4550 13 1 5.9026 8.7709 2.3732 14 6 7.3771 10.0098 1.3748 15 7 8.1499 10.1390 2.6126 16 6 9.0196 11.1850 2.7707 17 1 9.1360 11.9143 1.9827 18 6 9.7515 11.3077 3.9438 19 7 9.6093 10.4192 4.9043 20 14 10.9374 12.7348 4.1598 21 1 10.9118 13.5878 2.9445 22 1 10.5316 13.5415 5.3387 23 1 12.3108 12.2099 4.3679 24 6 5.5693 8.6690 0.2165 25 1 5.9810 9.2514 -0.6077 26 6 4.1605 9.1573 0.5595 27 6 5.5433 7.1726 -0.1463 28 6 4.5769 4.5865 -0.6213 29 7 3.8660 3.5367 -0.9278 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6884 1.8465 -0.8899 35 1 3.8567 0.6442 -0.8908 36 1 3.8574 0.6438 0.8891 37 1 5.4244 2.4411 1.7338 38 1 7.7100 7.1872 2.3407 39 1 8.1586 7.6089 0.6561 40 1 8.0584 9.9163 0.5292 41 1 6.7527 10.8933 1.2423 42 1 8.0456 9.4838 3.3202 43 1 10.1210 10.5048 5.7239 44 1 3.7666 8.5746 1.3922 45 1 4.1988 10.2102 0.8388 46 1 3.5123 9.0349 -0.3082 47 1 5.9572 7.0252 -1.1438 48 1 4.5210 6.7964 -0.1094 49 1 4.5878 5.5241 -1.1572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106930039.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:43 Heat of formation + Delta-G solvation = 19.061992 kcal Electronic energy + Delta-G solvation = -28634.717811 eV Core-core repulsion = 24599.497850 eV Total energy + Delta-G solvation = -4035.219960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71227 -39.74177 -38.51720 -37.63472 -34.72041 -34.27468 -32.72330 -31.40269 -30.74405 -30.00738 -28.77230 -26.88041 -26.51153 -25.48956 -23.94453 -23.46901 -22.19986 -21.30423 -20.80891 -19.81521 -19.51318 -17.82608 -17.08248 -16.86835 -16.77282 -15.99345 -15.95150 -15.85536 -15.44016 -14.85317 -14.65737 -14.40689 -14.24611 -13.96104 -13.78505 -13.46894 -13.27714 -13.08433 -12.93925 -12.81528 -12.58645 -12.34714 -12.19021 -11.93870 -11.91621 -11.76607 -11.33946 -11.13547 -11.07302 -10.84127 -10.51955 -10.42529 -10.32133 -10.30138 -9.96200 -9.91503 -9.74380 -9.62907 -8.99111 -8.84784 -8.46602 -6.88395 -5.72041 -3.01254 1.27958 1.81600 1.96567 3.10337 3.19906 3.46407 3.46563 3.51570 3.54204 4.04931 4.30804 4.43694 4.49252 4.58171 4.62354 4.65163 4.74359 4.77179 4.79345 4.89540 4.93863 5.05797 5.08143 5.12954 5.23867 5.27023 5.38737 5.48055 5.55583 5.61255 5.62428 5.82017 5.84978 6.01492 6.06163 6.14485 6.20326 6.24166 6.28703 6.38260 6.45860 6.50750 6.57176 6.75947 6.89228 7.21679 7.72501 7.73998 8.35453 8.46175 9.57484 10.15279 10.49502 11.50640 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024611 B = 0.001946 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.406963 B =14386.627580 C =14952.357166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.134 3.866 5 N -0.363 5.363 6 C 0.131 3.869 7 C -0.282 4.282 8 C 0.610 3.390 9 O -0.546 6.546 10 N -0.616 5.616 11 C 0.117 3.883 12 C -0.102 4.102 13 H 0.083 0.917 14 C 0.165 3.835 15 N -0.733 5.733 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.101 4.101 25 H 0.088 0.912 26 C -0.141 4.141 27 C 0.097 3.903 28 C 0.075 3.925 29 N -0.299 5.299 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.190 0.810 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.021 0.979 41 H 0.023 0.977 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.291 -18.629 -14.111 30.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.143 5.143 6 C -0.020 4.020 7 C -0.297 4.297 8 C 0.399 3.601 9 O -0.425 6.425 10 N -0.349 5.349 11 C -0.005 4.005 12 C -0.122 4.122 13 H 0.102 0.898 14 C 0.037 3.963 15 N -0.377 5.377 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.120 4.120 25 H 0.106 0.894 26 C -0.199 4.199 27 C -0.026 4.026 28 C -0.113 4.113 29 N -0.119 5.119 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.207 0.793 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.039 0.961 41 H 0.041 0.959 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -19.659 -19.639 -14.458 31.323 hybrid contribution 0.992 1.186 0.946 1.813 sum -18.666 -18.452 -13.512 29.521 Atomic orbital electron populations 1.22788 0.79837 1.03178 1.00450 1.87779 1.20672 1.26844 1.95619 1.22652 0.92433 0.85421 1.02175 1.21493 0.92764 0.78656 1.05777 1.48315 1.33038 1.11966 1.21020 1.22998 0.90697 0.94215 0.94088 1.20264 1.10015 0.96244 1.03132 1.16776 0.81517 0.79846 0.81945 1.90807 1.46376 1.75149 1.30152 1.48549 1.35647 1.09010 1.41721 1.22497 0.91160 0.85713 1.01117 1.22509 0.96491 0.95341 0.97817 0.89840 1.20625 0.92122 0.92867 0.90680 1.42384 1.48520 1.31270 1.15541 1.19259 1.15218 1.02512 1.00163 0.91127 1.24749 1.00650 0.98835 0.96721 1.69674 1.44828 1.36397 1.07050 0.86133 0.80874 0.81832 0.77434 1.20579 1.21934 1.21892 1.22103 0.96699 0.94244 0.98980 0.89375 1.21834 0.95028 1.01923 1.01105 1.22499 0.95448 0.92591 0.92062 1.24654 0.93319 0.97949 0.95359 1.77157 1.24509 0.96760 1.13480 0.93732 0.93659 0.89116 0.92501 0.91433 0.88286 0.87245 0.79283 0.89203 0.90711 0.96089 0.95936 0.78185 0.93548 0.92641 0.91850 0.92771 0.91434 0.90416 0.78500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.78 10.70 -35.23 -0.38 -3.16 16 3 C 0.05 0.34 6.11 37.16 0.23 0.56 16 4 C 0.13 0.84 6.86 -4.04 -0.03 0.82 16 5 N -0.36 -3.32 3.65 -60.81 -0.22 -3.55 16 6 C 0.13 1.33 11.26 -16.56 -0.19 1.15 16 7 C -0.28 -3.45 6.06 -105.07 -0.64 -4.09 16 8 C 0.61 9.49 7.87 -12.52 -0.10 9.39 16 9 O -0.55 -10.61 17.10 5.27 0.09 -10.52 16 10 N -0.62 -8.81 3.29 -171.25 -0.56 -9.38 16 11 C 0.12 1.93 6.47 -2.31 -0.01 1.91 16 12 C -0.10 -1.60 2.60 -88.93 -0.23 -1.83 16 13 H 0.08 1.43 7.86 -51.93 -0.41 1.02 16 14 C 0.17 3.18 5.59 -4.04 -0.02 3.16 16 15 N -0.73 -18.44 5.52 -59.91 -0.33 -18.77 16 16 C -0.24 -6.74 9.99 -15.05 -0.15 -6.89 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 20 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 C -0.10 -1.15 3.17 -89.24 -0.28 -1.43 16 25 H 0.09 0.93 7.85 -51.93 -0.41 0.53 16 26 C -0.14 -1.44 8.90 37.16 0.33 -1.11 16 27 C 0.10 1.02 4.87 -2.98 -0.01 1.01 16 28 C 0.07 0.78 10.34 -16.99 -0.18 0.60 16 29 N -0.30 -3.18 12.33 30.86 0.38 -2.80 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.47 8.06 -51.93 -0.42 0.05 16 37 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.09 1.76 7.81 -51.93 -0.41 1.35 16 39 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 40 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.38 10.32 7.67 -40.82 -0.31 10.01 16 43 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.59 7.83 -51.93 -0.41 0.18 16 48 H 0.08 0.70 5.40 -51.93 -0.28 0.42 16 49 H 0.20 1.58 4.98 -52.49 -0.26 1.32 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -35.55 402.14 -7.45 -43.01 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.93 Total: 5.39 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -0.27 Total: 4.03 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.01 Total: -62.37 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.29 Total: -13.68 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.55 -7.45 -43.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106930039.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.071 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds