Wall clock time and date at job start Tue Mar 31 2020 19:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99374 * 2 1 4 4 C 1.53009 * 109.46938 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.46963 * 180.02562 * 4 3 2 6 6 C 1.34260 * 125.75295 * 124.99916 * 5 4 3 7 7 C 1.38048 * 107.41549 * 179.73345 * 6 5 4 8 8 C 1.47427 * 126.41310 * 180.26179 * 7 6 5 9 9 O 1.21605 * 120.00487 * 7.06635 * 8 7 6 10 10 N 1.34776 * 119.99924 * 187.06218 * 8 7 6 11 11 C 1.48123 * 127.03404 * 185.33201 * 10 8 7 12 12 C 1.54597 * 103.42081 * 219.28776 * 11 10 8 13 13 H 1.08999 * 110.57753 * 81.16675 * 12 11 10 14 14 C 1.53002 * 110.99000 * 204.37203 * 12 11 10 15 15 N 1.46500 * 109.46808 * 288.65218 * 14 12 11 16 16 C 1.36944 * 119.99480 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00111 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99273 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00449 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99641 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46791 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47094 * 119.99724 * 20 18 16 23 23 H 1.48499 * 109.46886 * 240.00394 * 20 18 16 24 24 C 1.54624 * 102.91001 * 322.86411 * 12 11 10 25 25 H 1.08997 * 110.32787 * 262.80731 * 24 12 11 26 26 C 1.53005 * 110.41020 * 140.63945 * 24 12 11 27 27 C 1.47489 * 127.03543 * 5.64548 * 10 8 7 28 28 C 1.41284 * 107.16937 * 0.26416 * 7 6 5 29 29 N 1.30440 * 108.02493 * 359.97438 * 28 7 6 30 30 H 1.09000 * 109.47029 * 299.98991 * 1 2 3 31 31 H 1.08991 * 109.47707 * 60.00032 * 1 2 3 32 32 H 1.09000 * 109.46702 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47518 * 60.00713 * 3 2 1 34 34 H 1.09000 * 109.47724 * 300.00041 * 3 2 1 35 35 H 1.08994 * 109.47200 * 60.00112 * 4 3 2 36 36 H 1.09000 * 109.46773 * 299.99767 * 4 3 2 37 37 H 1.07997 * 126.29602 * 359.97438 * 6 5 4 38 38 H 1.08998 * 110.65815 * 337.76470 * 11 10 8 39 39 H 1.08990 * 110.66376 * 100.88574 * 11 10 8 40 40 H 1.09002 * 109.46997 * 48.64617 * 14 12 11 41 41 H 1.08993 * 109.47506 * 168.64831 * 14 12 11 42 42 H 0.96996 * 119.99918 * 359.97438 * 15 14 12 43 43 H 0.97001 * 119.99998 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.46900 * 302.86800 * 26 24 12 45 45 H 1.08991 * 109.47362 * 62.87578 * 26 24 12 46 46 H 1.09000 * 109.46603 * 182.87431 * 26 24 12 47 47 H 1.08999 * 109.90997 * 273.87741 * 27 10 8 48 48 H 1.08998 * 109.91105 * 34.96156 * 27 10 8 49 49 H 1.08001 * 125.98575 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1311 2.5232 0.0000 6 6 5.0214 2.9852 0.8925 7 6 5.3311 4.2818 0.5339 8 6 6.2725 5.1803 1.2267 9 8 6.9582 4.7573 2.1375 10 7 6.3732 6.4706 0.8505 11 6 7.3358 7.4753 1.3583 12 6 6.4900 8.7658 1.4550 13 1 5.9026 8.7709 2.3732 14 6 7.3771 10.0098 1.3748 15 7 8.1499 10.1390 2.6126 16 6 9.0196 11.1850 2.7707 17 1 9.1360 11.9143 1.9827 18 6 9.7515 11.3077 3.9438 19 7 9.6093 10.4192 4.9043 20 14 10.9374 12.7348 4.1598 21 1 10.9118 13.5878 2.9445 22 1 10.5316 13.5415 5.3387 23 1 12.3108 12.2099 4.3679 24 6 5.5693 8.6690 0.2165 25 1 5.9810 9.2514 -0.6077 26 6 4.1605 9.1573 0.5595 27 6 5.5433 7.1726 -0.1463 28 6 4.5769 4.5865 -0.6213 29 7 3.8660 3.5367 -0.9278 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6884 1.8465 -0.8899 35 1 3.8567 0.6442 -0.8908 36 1 3.8574 0.6438 0.8891 37 1 5.4244 2.4411 1.7338 38 1 7.7100 7.1872 2.3407 39 1 8.1586 7.6089 0.6561 40 1 8.0584 9.9163 0.5292 41 1 6.7527 10.8933 1.2423 42 1 8.0456 9.4838 3.3202 43 1 10.1210 10.5048 5.7239 44 1 3.7666 8.5746 1.3922 45 1 4.1988 10.2102 0.8388 46 1 3.5123 9.0349 -0.3082 47 1 5.9572 7.0252 -1.1438 48 1 4.5210 6.7964 -0.1094 49 1 4.5878 5.5241 -1.1572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106930039.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:42 Heat of formation + Delta-G solvation = -6.244953 kcal Electronic energy + Delta-G solvation = -28635.815202 eV Core-core repulsion = 24599.497850 eV Total energy + Delta-G solvation = -4036.317352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.52788 -40.86729 -39.04755 -38.84453 -36.44455 -35.06393 -34.04994 -33.01233 -31.58990 -31.08879 -29.94239 -27.55819 -27.38373 -26.87695 -25.16144 -24.52488 -23.45499 -22.26834 -21.80385 -20.97985 -20.52039 -19.15171 -18.48484 -17.64048 -17.39650 -17.20368 -16.79784 -16.59221 -16.45685 -16.32111 -15.60506 -15.55717 -15.27431 -15.19747 -14.94061 -14.80355 -14.43140 -14.18622 -14.06378 -13.86721 -13.59088 -13.29453 -13.12259 -12.96706 -12.82183 -12.77670 -12.69915 -12.40421 -12.35244 -12.10058 -11.98520 -11.92789 -11.69848 -11.48772 -11.38507 -10.96417 -10.91103 -10.78573 -10.66348 -9.93254 -9.55924 -8.97369 -7.92661 -5.21851 0.43482 1.09867 1.14954 1.48248 1.49526 1.59594 2.00665 2.38253 2.57725 2.72020 3.36053 3.41584 3.56347 3.63417 3.76272 3.84189 3.85003 3.89389 3.98429 4.18274 4.22689 4.26835 4.28619 4.42515 4.44830 4.48094 4.54145 4.58771 4.62137 4.63019 4.66001 4.71293 4.82906 4.85784 4.89047 4.93920 5.09931 5.12753 5.24975 5.30779 5.36790 5.40156 5.52220 5.59550 5.71676 6.01496 6.29018 6.43358 6.61491 7.18082 7.34904 8.11967 8.33390 9.31326 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024611 B = 0.001946 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.406963 B =14386.627580 C =14952.357166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.057 3.943 4 C 0.129 3.871 5 N -0.355 5.355 6 C 0.139 3.861 7 C -0.307 4.307 8 C 0.604 3.396 9 O -0.600 6.600 10 N -0.616 5.616 11 C 0.120 3.880 12 C -0.093 4.093 13 H 0.063 0.937 14 C 0.165 3.835 15 N -0.748 5.748 16 C -0.241 4.241 17 H 0.081 0.919 18 C -0.080 4.080 19 N -0.973 5.973 20 Si 0.974 3.026 21 H -0.262 1.262 22 H -0.295 1.295 23 H -0.296 1.296 24 C -0.090 4.090 25 H 0.107 0.893 26 C -0.139 4.139 27 C 0.096 3.904 28 C 0.084 3.916 29 N -0.312 5.312 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.206 0.794 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.031 0.969 42 H 0.371 0.629 43 H 0.249 0.751 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.100 0.900 49 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.978 -18.664 -16.780 32.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.009 3.991 5 N -0.134 5.134 6 C -0.014 4.014 7 C -0.322 4.322 8 C 0.396 3.604 9 O -0.483 6.483 10 N -0.347 5.347 11 C -0.003 4.003 12 C -0.113 4.113 13 H 0.082 0.918 14 C 0.038 3.962 15 N -0.390 5.390 16 C -0.373 4.373 17 H 0.099 0.901 18 C -0.272 4.272 19 N -0.624 5.624 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.222 1.222 23 H -0.223 1.223 24 C -0.110 4.110 25 H 0.125 0.875 26 C -0.196 4.196 27 C -0.026 4.026 28 C -0.104 4.104 29 N -0.132 5.132 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.149 0.851 37 H 0.222 0.778 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.116 0.884 48 H 0.118 0.882 49 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -21.410 -19.657 -17.220 33.784 hybrid contribution 1.432 1.117 1.720 2.501 sum -19.978 -18.541 -15.500 31.355 Atomic orbital electron populations 1.22966 0.78689 1.04274 1.00955 1.87754 1.21997 1.26984 1.95683 1.22550 0.92510 0.85302 1.01717 1.21760 0.92606 0.77393 1.07324 1.48506 1.32323 1.12508 1.20110 1.23269 0.90114 0.93780 0.94192 1.20064 1.10928 0.96687 1.04500 1.17304 0.81402 0.80306 0.81422 1.90769 1.48669 1.76180 1.32647 1.48582 1.35453 1.08570 1.42139 1.22252 0.92049 0.87021 0.98968 1.22320 0.96354 0.93145 0.99440 0.91845 1.20806 0.92189 0.94800 0.88377 1.42652 1.48917 1.30337 1.17137 1.19724 1.14725 1.02812 1.00056 0.90123 1.25613 1.03065 1.01714 0.96789 1.69850 1.46329 1.38648 1.07555 0.85053 0.78088 0.78804 0.77697 1.18593 1.22203 1.22334 1.22113 0.96463 0.95424 0.96971 0.87465 1.21826 0.94521 1.01080 1.02174 1.22796 0.96296 0.91285 0.92225 1.24931 0.92246 0.98712 0.94474 1.77145 1.24833 0.97112 1.14085 0.93249 0.93141 0.87818 0.92703 0.92136 0.87447 0.85086 0.77775 0.93583 0.90707 0.95200 0.95062 0.79803 0.94172 0.93595 0.92697 0.89528 0.88396 0.88178 0.76276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -5.12 10.70 -148.98 -1.59 -6.72 16 3 C 0.06 0.66 6.11 71.99 0.44 1.10 16 4 C 0.13 1.35 6.86 86.38 0.59 1.95 16 5 N -0.36 -5.80 3.65 -346.30 -1.26 -7.07 16 6 C 0.14 2.65 11.26 84.28 0.95 3.60 16 7 C -0.31 -7.19 6.06 -20.15 -0.12 -7.31 16 8 C 0.60 19.05 7.87 86.66 0.68 19.74 16 9 O -0.60 -24.53 17.10 -4.05 -0.07 -24.60 16 10 N -0.62 -17.44 3.29 -813.95 -2.68 -20.12 16 11 C 0.12 4.11 6.47 86.61 0.56 4.67 16 12 C -0.09 -2.91 2.60 -9.70 -0.03 -2.94 16 13 H 0.06 2.25 7.86 -2.39 -0.02 2.23 16 14 C 0.16 6.30 5.59 86.38 0.48 6.78 16 15 N -0.75 -38.52 5.52 -343.45 -1.90 -40.42 16 16 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 18 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 19 N -0.97 -61.71 13.06 21.65 0.28 -61.43 16 20 Si 0.97 46.98 29.55 68.60 2.03 49.00 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 24 C -0.09 -1.84 3.17 -9.90 -0.03 -1.87 16 25 H 0.11 1.85 7.85 -2.39 -0.02 1.83 16 26 C -0.14 -2.44 8.90 71.98 0.64 -1.80 16 27 C 0.10 1.73 4.87 86.53 0.42 2.15 16 28 C 0.08 1.53 10.34 85.65 0.89 2.41 16 29 N -0.31 -5.90 12.33 -56.28 -0.69 -6.60 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.13 0.82 8.06 -2.39 -0.02 0.80 16 37 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.05 1.96 7.81 -2.39 -0.02 1.94 16 39 H 0.07 2.52 7.94 -2.39 -0.02 2.50 16 40 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.37 20.90 7.67 -92.71 -0.71 20.19 16 43 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 44 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.10 1.27 7.83 -2.39 -0.02 1.25 16 48 H 0.10 1.42 5.40 -2.39 -0.01 1.40 16 49 H 0.22 2.68 4.98 -2.91 -0.01 2.67 16 Total: -1.00 -80.06 402.14 2.38 -77.68 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.24 Total: 27.31 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 8.03 Total: 12.95 kcal Atomic # 7 Polarization: -129.38 SS G_CDS: -6.25 Total: -135.63 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.66 Total: -31.32 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -80.06 2.38 -77.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106930039.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.439 kcal (2) G-P(sol) polarization free energy of solvation -80.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds