Wall clock time and date at job start Tue Mar 31 2020 19:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46767 * 2 1 4 4 C 1.50692 * 109.47411 * 120.00683 * 2 1 3 5 5 O 1.21275 * 120.00561 * 120.00067 * 4 2 1 6 6 N 1.34784 * 119.99730 * 300.00133 * 4 2 1 7 7 C 1.46500 * 119.99911 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47162 * 180.02562 * 7 6 4 9 9 C 1.53006 * 109.50935 * 304.99214 * 8 7 6 10 10 C 1.53298 * 109.50986 * 184.89798 * 8 7 6 11 11 N 1.47158 * 108.38257 * 187.77108 * 10 8 7 12 12 C 1.36932 * 120.98398 * 230.51738 * 11 10 8 13 13 H 1.07996 * 120.00671 * 153.31982 * 12 11 10 14 14 C 1.38820 * 119.99521 * 333.31664 * 12 11 10 15 15 N 1.31618 * 120.00292 * 343.55569 * 14 12 11 16 16 Si 1.86799 * 119.99881 * 163.56026 * 14 12 11 17 17 H 1.48500 * 109.47293 * 59.99860 * 16 14 12 18 18 H 1.48497 * 109.47324 * 180.02562 * 16 14 12 19 19 H 1.48510 * 109.46976 * 300.00022 * 16 14 12 20 20 C 1.47155 * 118.03423 * 50.52732 * 11 10 8 21 21 C 1.53290 * 108.39015 * 309.46856 * 20 11 10 22 22 O 1.42961 * 109.51380 * 65.09637 * 8 7 6 23 23 C 1.50708 * 109.46960 * 240.00728 * 2 1 3 24 24 C 1.35314 * 126.12673 * 275.18143 * 23 2 1 25 25 C 1.39859 * 107.91914 * 180.26525 * 24 23 2 26 26 N 1.30834 * 108.20485 * 359.74071 * 25 24 23 27 27 N 1.34940 * 126.12537 * 94.99611 * 23 2 1 28 28 C 1.46506 * 126.04121 * 359.97438 * 27 23 2 29 29 H 1.08998 * 109.47144 * 59.99880 * 1 2 3 30 30 H 1.09004 * 109.47163 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47397 * 299.99271 * 1 2 3 32 32 H 0.96995 * 119.99963 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.46620 * 299.99562 * 7 6 4 34 34 H 1.08996 * 109.47372 * 59.99421 * 7 6 4 35 35 H 1.09005 * 109.46681 * 60.00407 * 9 8 7 36 36 H 1.08999 * 109.47062 * 179.97438 * 9 8 7 37 37 H 1.08991 * 109.47217 * 300.00319 * 9 8 7 38 38 H 1.08997 * 109.68289 * 307.48632 * 10 8 7 39 39 H 1.08994 * 109.68629 * 68.01480 * 10 8 7 40 40 H 0.96996 * 120.00159 * 179.97438 * 15 14 12 41 41 H 1.08999 * 109.67724 * 69.19428 * 20 11 10 42 42 H 1.09001 * 109.68332 * 189.73832 * 20 11 10 43 43 H 1.08998 * 109.51463 * 172.22241 * 21 20 11 44 44 H 1.08995 * 109.51049 * 292.32867 * 21 20 11 45 45 H 1.08001 * 126.03631 * 0.02562 * 24 23 2 46 46 H 1.08006 * 125.89815 * 179.75677 * 25 24 23 47 47 H 1.08993 * 109.47147 * 269.71266 * 28 27 23 48 48 H 1.09004 * 109.46955 * 149.71099 * 28 27 23 49 49 H 1.09002 * 109.46801 * 29.71236 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9405 3.6506 8 6 1.6850 -0.2199 4.8999 9 6 2.0883 1.2549 4.8398 10 6 2.2942 -0.8668 6.1490 11 7 1.6480 -0.2838 7.3357 12 6 2.3930 0.2129 8.3716 13 1 1.9894 0.9906 9.0030 14 6 3.6673 -0.2833 8.6104 15 7 4.0400 -1.4259 8.0736 16 14 4.8533 0.6705 9.6935 17 1 4.2690 0.8262 11.0498 18 1 6.1386 -0.0670 9.7894 19 1 5.0952 2.0110 9.1019 20 6 0.1773 -0.2506 7.3761 21 6 -0.3287 0.3663 6.0673 22 8 0.2605 -0.3233 4.9621 23 6 2.0323 -0.7103 -1.2306 24 6 2.2052 -2.0455 -1.3664 25 6 2.6910 -2.2876 -2.6554 26 7 2.8004 -1.1395 -3.2733 27 7 2.3870 -0.1290 -2.3956 28 6 2.3514 1.3059 -2.6889 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.1494 0.5387 2.5436 33 1 1.8326 -1.9683 3.6506 34 1 3.2856 -0.9401 3.6504 35 1 1.6533 1.7146 3.9523 36 1 1.7238 1.7677 5.7299 37 1 3.1744 1.3329 4.7942 38 1 2.1199 -1.9425 6.1275 39 1 3.3656 -0.6690 6.1795 40 1 4.9305 -1.7724 8.2402 41 1 -0.2100 -1.2643 7.4781 42 1 -0.1531 0.3556 8.2196 43 1 -1.4136 0.2744 6.0170 44 1 -0.0502 1.4194 6.0296 45 1 2.0070 -2.7918 -0.6114 46 1 2.9336 -3.2552 -3.0693 47 1 1.3794 1.5674 -3.1068 48 1 3.1335 1.5492 -3.4082 49 1 2.5151 1.8687 -1.7699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107951806.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:19 Heat of formation + Delta-G solvation = 28.432822 kcal Electronic energy + Delta-G solvation = -30192.772667 eV Core-core repulsion = 26157.959056 eV Total energy + Delta-G solvation = -4034.813611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.47790 -39.79841 -38.80578 -35.02080 -34.46526 -34.35854 -33.11322 -31.66720 -31.28568 -29.12303 -27.99515 -26.85352 -26.63001 -25.80289 -24.43539 -23.26934 -21.62829 -21.19734 -20.63035 -19.59216 -18.68655 -17.30277 -17.09831 -16.75614 -15.87422 -15.72977 -15.56418 -15.15500 -14.80338 -14.51015 -14.39767 -14.18112 -13.92207 -13.76424 -13.54231 -13.39883 -13.08773 -13.06335 -12.76915 -12.67748 -12.56907 -12.40801 -12.20271 -11.91513 -11.64231 -11.52172 -11.23749 -11.04803 -10.84872 -10.72463 -10.68490 -10.35358 -10.30899 -10.02816 -9.74735 -9.57188 -9.34345 -9.08539 -8.87227 -8.57350 -8.46596 -6.77471 -5.88016 -3.32091 1.75779 2.34385 2.67427 2.86044 3.28749 3.32766 3.38409 3.38991 4.15717 4.19717 4.39475 4.40445 4.55773 4.76829 4.83220 4.94169 5.05489 5.10425 5.15413 5.30167 5.31920 5.38903 5.43218 5.47687 5.61527 5.67380 5.80312 5.82093 5.86797 5.89281 5.97694 6.04857 6.09194 6.23515 6.27296 6.40071 6.52871 6.63289 6.68101 6.70971 6.78145 6.91186 7.02971 7.42672 7.59229 7.64673 7.66995 7.83547 8.28645 8.30174 9.07240 9.70129 10.27415 11.19928 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.002599 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.076818 B =10768.732980 C =11319.317893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 H 0.103 0.897 4 C 0.517 3.483 5 O -0.525 6.525 6 N -0.714 5.714 7 C 0.140 3.860 8 C 0.078 3.922 9 C -0.162 4.162 10 C 0.160 3.840 11 N -0.590 5.590 12 C -0.256 4.256 13 H 0.067 0.933 14 C 0.005 3.995 15 N -0.901 5.901 16 Si 0.903 3.097 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.283 1.283 20 C 0.109 3.891 21 C 0.046 3.954 22 O -0.384 6.384 23 C 0.088 3.912 24 C -0.226 4.226 25 C 0.040 3.960 26 N -0.300 5.300 27 N -0.376 5.376 28 C 0.100 3.900 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.401 0.599 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.030 0.970 39 H 0.096 0.904 40 H 0.257 0.743 41 H 0.026 0.974 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.155 0.845 46 H 0.182 0.818 47 H 0.073 0.927 48 H 0.088 0.912 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 6.496 -17.515 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 H 0.121 0.879 4 C 0.301 3.699 5 O -0.401 6.401 6 N -0.366 5.366 7 C 0.017 3.983 8 C 0.037 3.963 9 C -0.219 4.219 10 C 0.034 3.966 11 N -0.314 5.314 12 C -0.385 4.385 13 H 0.085 0.915 14 C -0.194 4.194 15 N -0.545 5.545 16 Si 0.733 3.267 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.210 1.210 20 C -0.018 4.018 21 C -0.032 4.032 22 O -0.303 6.303 23 C -0.039 4.039 24 C -0.255 4.255 25 C -0.146 4.146 26 N -0.122 5.122 27 N -0.160 5.160 28 C -0.042 4.042 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.236 0.764 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.172 0.828 46 H 0.199 0.801 47 H 0.092 0.908 48 H 0.107 0.893 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.848 6.316 -18.782 20.966 hybrid contribution 0.363 0.609 1.658 1.803 sum -6.485 6.925 -17.124 19.577 Atomic orbital electron populations 1.21765 0.91045 1.03885 1.02942 1.19779 0.98005 0.99637 0.89517 0.87926 1.19987 0.80784 0.84936 0.84232 1.90740 1.37330 1.25781 1.86283 1.45958 1.53280 1.32143 1.05267 1.21360 0.99085 0.96502 0.81382 1.22548 0.82031 0.95371 0.96344 1.22205 1.01926 0.96477 1.01307 1.21281 0.98709 0.94586 0.82056 1.43985 0.99026 1.71401 1.16988 1.19105 0.97233 1.14115 1.08090 0.91486 1.25055 0.99638 0.95631 0.99121 1.69994 1.19637 1.17419 1.47451 0.86360 0.80534 0.79397 0.80413 1.20836 1.21521 1.20989 1.21599 0.86643 0.98257 0.95263 1.23030 0.96420 0.95669 0.88052 1.87821 1.19783 1.74940 1.47773 1.20272 1.01957 0.93625 0.88062 1.21436 1.11010 0.95020 0.98044 1.23871 0.99742 0.96976 0.93969 1.77317 1.22564 0.95864 1.16452 1.48379 1.51472 1.06722 1.09412 1.21811 1.03619 0.75719 1.03043 0.91582 0.91114 0.90865 0.76374 0.90681 0.89968 0.94061 0.90766 0.91866 0.95227 0.88606 0.93329 0.95642 0.92058 0.90191 0.93431 0.82752 0.80101 0.90838 0.89338 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.07 37.16 0.34 -0.76 16 2 C -0.05 -0.46 2.92 -92.92 -0.27 -0.73 16 3 H 0.10 0.78 6.94 -51.93 -0.36 0.42 16 4 C 0.52 6.93 7.08 -10.99 -0.08 6.85 16 5 O -0.53 -9.04 13.75 5.56 0.08 -8.96 16 6 N -0.71 -9.24 5.09 -60.30 -0.31 -9.55 16 7 C 0.14 2.26 4.85 -4.04 -0.02 2.24 16 8 C 0.08 1.37 0.78 -90.46 -0.07 1.30 16 9 C -0.16 -2.58 7.87 37.16 0.29 -2.29 16 10 C 0.16 3.61 4.11 -3.53 -0.01 3.60 16 11 N -0.59 -13.97 2.57 -171.83 -0.44 -14.41 16 12 C -0.26 -6.66 9.65 -15.06 -0.15 -6.81 16 13 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 14 C 0.00 0.12 4.95 -17.43 -0.09 0.04 16 15 N -0.90 -25.26 11.14 55.49 0.62 -24.64 16 16 Si 0.90 20.93 29.58 -169.99 -5.03 15.90 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.11 2.16 6.73 -3.53 -0.02 2.13 16 21 C 0.05 0.76 6.60 37.31 0.25 1.00 16 22 O -0.38 -6.65 10.18 -35.23 -0.36 -7.01 16 23 C 0.09 1.07 5.73 -82.26 -0.47 0.59 16 24 C -0.23 -3.04 9.14 -40.02 -0.37 -3.41 16 25 C 0.04 0.49 12.02 -17.37 -0.21 0.29 16 26 N -0.30 -4.02 12.58 30.62 0.39 -3.64 16 27 N -0.38 -4.36 4.01 -63.88 -0.26 -4.61 16 28 C 0.10 0.70 11.28 59.85 0.67 1.37 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.50 7.56 -51.93 -0.39 0.10 16 32 H 0.40 4.37 6.41 -40.82 -0.26 4.11 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.04 0.53 6.58 -51.93 -0.34 0.19 16 36 H 0.07 1.32 6.12 -51.93 -0.32 1.00 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 2.40 6.16 -51.93 -0.32 2.08 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.75 6.26 -51.93 -0.32 0.42 16 45 H 0.15 2.20 6.82 -52.49 -0.36 1.84 16 46 H 0.18 1.68 8.06 -52.48 -0.42 1.25 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 0.42 6.96 -51.93 -0.36 0.06 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -32.81 386.41 -7.34 -40.16 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.65 Total: 5.51 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.20 Total: 5.42 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.00 Total: -56.85 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.28 Total: -15.97 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.81 -7.34 -40.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107951806.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.589 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds