Wall clock time and date at job start Tue Mar 31 2020 19:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46767 * 2 1 4 4 C 1.50692 * 109.47411 * 120.00683 * 2 1 3 5 5 O 1.21275 * 120.00561 * 120.00067 * 4 2 1 6 6 N 1.34784 * 119.99730 * 300.00133 * 4 2 1 7 7 C 1.46500 * 119.99911 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47162 * 180.02562 * 7 6 4 9 9 C 1.53006 * 109.50935 * 304.99214 * 8 7 6 10 10 C 1.53298 * 109.50986 * 184.89798 * 8 7 6 11 11 N 1.47158 * 108.38257 * 187.77108 * 10 8 7 12 12 C 1.36932 * 120.98398 * 230.51738 * 11 10 8 13 13 H 1.07996 * 120.00671 * 153.31982 * 12 11 10 14 14 C 1.38820 * 119.99521 * 333.31664 * 12 11 10 15 15 N 1.31618 * 120.00292 * 343.55569 * 14 12 11 16 16 Si 1.86799 * 119.99881 * 163.56026 * 14 12 11 17 17 H 1.48500 * 109.47293 * 59.99860 * 16 14 12 18 18 H 1.48497 * 109.47324 * 180.02562 * 16 14 12 19 19 H 1.48510 * 109.46976 * 300.00022 * 16 14 12 20 20 C 1.47155 * 118.03423 * 50.52732 * 11 10 8 21 21 C 1.53290 * 108.39015 * 309.46856 * 20 11 10 22 22 O 1.42961 * 109.51380 * 65.09637 * 8 7 6 23 23 C 1.50708 * 109.46960 * 240.00728 * 2 1 3 24 24 C 1.35314 * 126.12673 * 275.18143 * 23 2 1 25 25 C 1.39859 * 107.91914 * 180.26525 * 24 23 2 26 26 N 1.30834 * 108.20485 * 359.74071 * 25 24 23 27 27 N 1.34940 * 126.12537 * 94.99611 * 23 2 1 28 28 C 1.46506 * 126.04121 * 359.97438 * 27 23 2 29 29 H 1.08998 * 109.47144 * 59.99880 * 1 2 3 30 30 H 1.09004 * 109.47163 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47397 * 299.99271 * 1 2 3 32 32 H 0.96995 * 119.99963 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.46620 * 299.99562 * 7 6 4 34 34 H 1.08996 * 109.47372 * 59.99421 * 7 6 4 35 35 H 1.09005 * 109.46681 * 60.00407 * 9 8 7 36 36 H 1.08999 * 109.47062 * 179.97438 * 9 8 7 37 37 H 1.08991 * 109.47217 * 300.00319 * 9 8 7 38 38 H 1.08997 * 109.68289 * 307.48632 * 10 8 7 39 39 H 1.08994 * 109.68629 * 68.01480 * 10 8 7 40 40 H 0.96996 * 120.00159 * 179.97438 * 15 14 12 41 41 H 1.08999 * 109.67724 * 69.19428 * 20 11 10 42 42 H 1.09001 * 109.68332 * 189.73832 * 20 11 10 43 43 H 1.08998 * 109.51463 * 172.22241 * 21 20 11 44 44 H 1.08995 * 109.51049 * 292.32867 * 21 20 11 45 45 H 1.08001 * 126.03631 * 0.02562 * 24 23 2 46 46 H 1.08006 * 125.89815 * 179.75677 * 25 24 23 47 47 H 1.08993 * 109.47147 * 269.71266 * 28 27 23 48 48 H 1.09004 * 109.46955 * 149.71099 * 28 27 23 49 49 H 1.09002 * 109.46801 * 29.71236 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9405 3.6506 8 6 1.6850 -0.2199 4.8999 9 6 2.0883 1.2549 4.8398 10 6 2.2942 -0.8668 6.1490 11 7 1.6480 -0.2838 7.3357 12 6 2.3930 0.2129 8.3716 13 1 1.9894 0.9906 9.0030 14 6 3.6673 -0.2833 8.6104 15 7 4.0400 -1.4259 8.0736 16 14 4.8533 0.6705 9.6935 17 1 4.2690 0.8262 11.0498 18 1 6.1386 -0.0670 9.7894 19 1 5.0952 2.0110 9.1019 20 6 0.1773 -0.2506 7.3761 21 6 -0.3287 0.3663 6.0673 22 8 0.2605 -0.3233 4.9621 23 6 2.0323 -0.7103 -1.2306 24 6 2.2052 -2.0455 -1.3664 25 6 2.6910 -2.2876 -2.6554 26 7 2.8004 -1.1395 -3.2733 27 7 2.3870 -0.1290 -2.3956 28 6 2.3514 1.3059 -2.6889 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.1494 0.5387 2.5436 33 1 1.8326 -1.9683 3.6506 34 1 3.2856 -0.9401 3.6504 35 1 1.6533 1.7146 3.9523 36 1 1.7238 1.7677 5.7299 37 1 3.1744 1.3329 4.7942 38 1 2.1199 -1.9425 6.1275 39 1 3.3656 -0.6690 6.1795 40 1 4.9305 -1.7724 8.2402 41 1 -0.2100 -1.2643 7.4781 42 1 -0.1531 0.3556 8.2196 43 1 -1.4136 0.2744 6.0170 44 1 -0.0502 1.4194 6.0296 45 1 2.0070 -2.7918 -0.6114 46 1 2.9336 -3.2552 -3.0693 47 1 1.3794 1.5674 -3.1068 48 1 3.1335 1.5492 -3.4082 49 1 2.5151 1.8687 -1.7699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107951806.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:18 Heat of formation + Delta-G solvation = 5.607811 kcal Electronic energy + Delta-G solvation = -30193.762434 eV Core-core repulsion = 26157.959056 eV Total energy + Delta-G solvation = -4035.803378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.38315 -41.05665 -40.13890 -36.54084 -35.92470 -35.31928 -33.89234 -33.21869 -32.95486 -30.01970 -29.53433 -28.06931 -27.54436 -27.34897 -25.39135 -24.94619 -23.03747 -22.24558 -21.72398 -20.62155 -20.12238 -18.92847 -18.03579 -17.98480 -17.33816 -16.85962 -16.73838 -16.42008 -16.11525 -15.83323 -15.58483 -15.39702 -15.32538 -15.16176 -14.69082 -14.62418 -14.34397 -14.17365 -13.96946 -13.58434 -13.44302 -13.24920 -13.18569 -13.08562 -13.00422 -12.89731 -12.73937 -12.50197 -12.42806 -12.27185 -12.17717 -11.92112 -11.83416 -11.61919 -11.11747 -10.84106 -10.69291 -10.47590 -10.21407 -10.07282 -9.38624 -8.69708 -7.88560 -5.35770 0.85886 1.46970 1.48665 1.54177 1.55660 1.64885 1.90051 2.23935 2.49306 2.82105 3.26067 3.32603 3.52593 3.68488 3.76935 3.95280 4.05276 4.07585 4.09307 4.13585 4.36605 4.45645 4.46265 4.49397 4.60212 4.66567 4.69301 4.71163 4.74987 4.76683 4.82936 4.88665 4.90190 4.99677 5.07444 5.15458 5.22192 5.24128 5.31851 5.39597 5.41083 5.56172 5.62805 5.75469 6.10717 6.30926 6.40193 6.56599 6.73590 7.08398 7.25616 7.77899 8.31746 9.16691 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.002599 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.076818 B =10768.732980 C =11319.317893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.035 4.035 3 H 0.139 0.861 4 C 0.515 3.485 5 O -0.569 6.569 6 N -0.700 5.700 7 C 0.151 3.849 8 C 0.095 3.905 9 C -0.153 4.153 10 C 0.167 3.833 11 N -0.607 5.607 12 C -0.259 4.259 13 H 0.074 0.926 14 C -0.050 4.050 15 N -0.937 5.937 16 Si 0.966 3.034 17 H -0.276 1.276 18 H -0.299 1.299 19 H -0.274 1.274 20 C 0.100 3.900 21 C 0.054 3.946 22 O -0.383 6.383 23 C 0.088 3.912 24 C -0.258 4.258 25 C 0.032 3.968 26 N -0.327 5.327 27 N -0.374 5.374 28 C 0.086 3.914 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.415 0.585 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.053 0.947 38 H -0.010 1.010 39 H 0.065 0.935 40 H 0.250 0.750 41 H 0.010 0.990 42 H 0.071 0.929 43 H 0.118 0.882 44 H 0.063 0.937 45 H 0.137 0.863 46 H 0.201 0.799 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.507 9.930 -18.629 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.058 4.058 3 H 0.157 0.843 4 C 0.301 3.699 5 O -0.447 6.447 6 N -0.353 5.353 7 C 0.026 3.974 8 C 0.054 3.946 9 C -0.211 4.211 10 C 0.041 3.959 11 N -0.331 5.331 12 C -0.389 4.389 13 H 0.091 0.909 14 C -0.245 4.245 15 N -0.582 5.582 16 Si 0.794 3.206 17 H -0.202 1.202 18 H -0.225 1.225 19 H -0.200 1.200 20 C -0.025 4.025 21 C -0.024 4.024 22 O -0.302 6.302 23 C -0.040 4.040 24 C -0.287 4.287 25 C -0.152 4.152 26 N -0.149 5.149 27 N -0.157 5.157 28 C -0.054 4.054 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.254 0.746 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.008 0.992 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.089 0.911 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.154 0.846 46 H 0.218 0.782 47 H 0.113 0.887 48 H 0.110 0.890 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.653 9.808 -19.916 23.827 hybrid contribution 0.837 -0.490 2.043 2.261 sum -7.816 9.318 -17.874 21.619 Atomic orbital electron populations 1.21788 0.89011 1.03445 1.04950 1.19832 0.99367 1.00344 0.86238 0.84325 1.20649 0.79810 0.84388 0.85071 1.90741 1.39269 1.27827 1.86891 1.45714 1.53237 1.32242 1.04134 1.20974 0.98253 0.95736 0.82417 1.22161 0.82085 0.96263 0.94132 1.22118 1.01618 0.94713 1.02634 1.21051 0.97489 0.92847 0.84551 1.44245 1.00725 1.71197 1.16937 1.19466 0.97517 1.13696 1.08203 0.90873 1.25799 1.01337 0.96449 1.00936 1.70173 1.19495 1.19157 1.49421 0.85367 0.78008 0.78213 0.79029 1.20164 1.22501 1.19982 1.21836 0.84389 0.98065 0.98208 1.23094 0.98219 0.95774 0.85289 1.87835 1.19059 1.75389 1.47959 1.20544 1.01069 0.93458 0.88935 1.21460 1.13068 0.95836 0.98317 1.24218 0.99402 0.97857 0.93725 1.77253 1.23620 0.96496 1.17544 1.48721 1.50261 1.08001 1.08759 1.22252 1.05119 0.73289 1.04723 0.89432 0.92854 0.88955 0.74622 0.92691 0.91292 0.89878 0.92061 0.92747 0.99185 0.91669 0.94119 0.97152 0.91052 0.86431 0.91932 0.84565 0.78205 0.88671 0.88956 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.07 71.98 0.65 -0.98 16 2 C -0.03 -0.59 2.92 -12.29 -0.04 -0.63 16 3 H 0.14 1.39 6.94 -2.39 -0.02 1.37 16 4 C 0.51 13.12 7.08 87.65 0.62 13.74 16 5 O -0.57 -19.93 13.75 -3.02 -0.04 -19.98 16 6 N -0.70 -16.72 5.09 -463.07 -2.36 -19.08 16 7 C 0.15 4.91 4.85 86.38 0.42 5.32 16 8 C 0.09 3.27 0.78 -10.69 -0.01 3.26 16 9 C -0.15 -4.55 7.87 71.98 0.57 -3.99 16 10 C 0.17 7.83 4.11 86.35 0.35 8.18 16 11 N -0.61 -29.01 2.57 -697.54 -1.79 -30.80 16 12 C -0.26 -13.54 9.65 84.04 0.81 -12.73 16 13 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 14 C -0.05 -2.70 4.95 84.86 0.42 -2.28 16 15 N -0.94 -54.70 11.14 21.65 0.24 -54.46 16 16 Si 0.97 43.54 29.58 68.60 2.03 45.57 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 C 0.10 3.89 6.73 86.35 0.58 4.47 16 21 C 0.05 1.58 6.60 72.08 0.48 2.06 16 22 O -0.38 -12.44 10.18 -148.98 -1.52 -13.96 16 23 C 0.09 2.02 5.73 41.41 0.24 2.25 16 24 C -0.26 -7.04 9.14 21.99 0.20 -6.84 16 25 C 0.03 0.81 12.02 85.23 1.02 1.83 16 26 N -0.33 -8.51 12.58 -57.03 -0.72 -9.23 16 27 N -0.37 -7.91 4.01 -356.02 -1.43 -9.34 16 28 C 0.09 0.90 11.28 127.77 1.44 2.34 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.80 7.56 -2.39 -0.02 0.78 16 32 H 0.42 7.39 6.41 -92.71 -0.59 6.79 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.08 1.76 6.58 -2.38 -0.02 1.74 16 36 H 0.06 2.01 6.12 -2.39 -0.01 2.00 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.06 3.44 6.16 -2.39 -0.01 3.42 16 40 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 42 H 0.07 2.58 7.96 -2.39 -0.02 2.56 16 43 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.06 1.72 6.26 -2.39 -0.01 1.70 16 45 H 0.14 4.15 6.82 -2.91 -0.02 4.13 16 46 H 0.20 3.80 8.06 -2.91 -0.02 3.77 16 47 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.11 0.59 6.96 -2.39 -0.02 0.57 16 Total: -1.00 -75.64 386.41 2.55 -73.09 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.37 Total: 22.16 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 7.76 Total: 16.03 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -6.05 Total: -122.91 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -1.56 Total: -33.93 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -75.64 2.55 -73.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107951806.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.696 kcal (2) G-P(sol) polarization free energy of solvation -75.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds