Wall clock time and date at job start Tue Mar 31 2020 19:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47096 * 2 1 4 4 C 1.50704 * 109.46881 * 240.00009 * 2 1 3 5 5 O 1.21275 * 120.00212 * 239.99522 * 4 2 1 6 6 N 1.34779 * 119.99941 * 60.00581 * 4 2 1 7 7 C 1.46497 * 119.99905 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46813 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.51505 * 304.90032 * 8 7 6 10 10 C 1.53298 * 109.55442 * 184.76850 * 8 7 6 11 11 N 1.47151 * 108.38467 * 187.74910 * 10 8 7 12 12 C 1.36933 * 120.98034 * 230.55553 * 11 10 8 13 13 H 1.08004 * 119.99835 * 153.30360 * 12 11 10 14 14 C 1.38817 * 120.00467 * 333.30764 * 12 11 10 15 15 N 1.31619 * 119.99654 * 343.55139 * 14 12 11 16 16 Si 1.86796 * 120.00056 * 163.55185 * 14 12 11 17 17 H 1.48496 * 109.47112 * 94.83196 * 16 14 12 18 18 H 1.48498 * 109.47020 * 214.83071 * 16 14 12 19 19 H 1.48497 * 109.47184 * 334.83052 * 16 14 12 20 20 C 1.47151 * 118.03597 * 50.53995 * 11 10 8 21 21 C 1.53294 * 108.38487 * 309.46342 * 20 11 10 22 22 O 1.42962 * 109.51277 * 65.00403 * 8 7 6 23 23 C 1.50696 * 109.46854 * 120.00599 * 2 1 3 24 24 C 1.35315 * 126.13349 * 84.68887 * 23 2 1 25 25 C 1.39868 * 107.92333 * 179.89937 * 24 23 2 26 26 N 1.30832 * 108.20053 * 0.36791 * 25 24 23 27 27 N 1.34952 * 126.12611 * 264.99374 * 23 2 1 28 28 C 1.46508 * 126.03422 * 359.97438 * 27 23 2 29 29 H 1.08999 * 109.47047 * 299.99300 * 1 2 3 30 30 H 1.09000 * 109.46968 * 60.00009 * 1 2 3 31 31 H 1.09003 * 109.47008 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99732 * 359.97438 * 6 4 2 33 33 H 1.09003 * 109.47425 * 59.99713 * 7 6 4 34 34 H 1.09000 * 109.47135 * 299.99763 * 7 6 4 35 35 H 1.09010 * 109.47184 * 180.10491 * 9 8 7 36 36 H 1.08998 * 109.47124 * 300.09822 * 9 8 7 37 37 H 1.08998 * 109.47470 * 60.10430 * 9 8 7 38 38 H 1.09000 * 109.68350 * 307.47961 * 10 8 7 39 39 H 1.09003 * 109.67500 * 67.98925 * 10 8 7 40 40 H 0.97002 * 120.00107 * 179.97438 * 15 14 12 41 41 H 1.08998 * 109.68306 * 189.73649 * 20 11 10 42 42 H 1.09005 * 109.67737 * 69.18539 * 20 11 10 43 43 H 1.08993 * 109.51453 * 172.22607 * 21 20 11 44 44 H 1.08999 * 109.50743 * 292.33075 * 21 20 11 45 45 H 1.08003 * 126.03323 * 0.03701 * 24 23 2 46 46 H 1.07999 * 125.89792 * 180.14665 * 25 24 23 47 47 H 1.08994 * 109.47450 * 89.99450 * 28 27 23 48 48 H 1.09004 * 109.46849 * 209.99806 * 28 27 23 49 49 H 1.09002 * 109.47082 * 329.99011 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2499 -2.4546 7 6 2.1955 -0.9402 -3.6508 8 6 1.6849 -0.2192 -4.9000 9 6 0.1599 -0.1121 -4.8408 10 6 2.0949 -1.0061 -6.1501 11 7 1.7581 -0.2021 -7.3357 12 6 1.0430 -0.7401 -8.3721 13 1 0.4421 -0.1013 -9.0025 14 6 1.0902 -2.1064 -8.6127 15 7 2.0457 -2.8362 -8.0772 16 14 -0.2022 -2.9092 -9.6964 17 1 0.3070 -3.0018 -11.0883 18 1 -0.4989 -4.2719 -9.1863 19 1 -1.4420 -2.0923 -9.6762 20 6 2.2122 1.1970 -7.3743 21 6 1.7966 1.8766 -6.0646 22 8 2.2536 1.0910 -4.9611 23 6 2.0323 -0.7105 1.2304 24 6 2.2028 -2.0459 1.3669 25 6 2.6860 -2.2886 2.6568 26 7 2.7939 -1.1407 3.2754 27 7 2.3871 -0.1295 2.3956 28 6 2.3528 1.3056 2.6886 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.1489 0.5386 -2.5435 33 1 1.8325 -1.9680 -3.6510 34 1 3.2855 -0.9398 -3.6506 35 1 -0.2033 0.4000 -5.7320 36 1 -0.2730 -1.1113 -4.7943 37 1 -0.1307 0.4514 -3.9542 38 1 3.1679 -1.1967 -6.1284 39 1 1.5546 -1.9522 -6.1818 40 1 2.0786 -3.7910 -8.2449 41 1 1.7491 1.7101 -8.2172 42 1 3.2970 1.2282 -7.4760 43 1 2.2413 2.8704 -6.0130 44 1 0.7105 1.9612 -6.0271 45 1 2.0034 -2.7923 0.6121 46 1 2.9250 -3.2565 3.0719 47 1 1.3790 1.5690 3.1013 48 1 3.1315 1.5474 3.4120 49 1 2.5225 1.8681 1.7705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107951809.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:25 Heat of formation + Delta-G solvation = 28.319627 kcal Electronic energy + Delta-G solvation = -30194.459572 eV Core-core repulsion = 26159.641053 eV Total energy + Delta-G solvation = -4034.818519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.47799 -39.80046 -38.80756 -35.02103 -34.46992 -34.35865 -33.11355 -31.66929 -31.28595 -29.13158 -27.99851 -26.85245 -26.61368 -25.81215 -24.44810 -23.27058 -21.62224 -21.20251 -20.63190 -19.59333 -18.68153 -17.29005 -17.12364 -16.76150 -15.97947 -15.65846 -15.43205 -15.13548 -14.95759 -14.55966 -14.40565 -14.07754 -13.90440 -13.76191 -13.54872 -13.43586 -13.09047 -13.04715 -12.83393 -12.61583 -12.56836 -12.43113 -12.26562 -11.85338 -11.63828 -11.54863 -11.23428 -11.05633 -10.86221 -10.70380 -10.68818 -10.35718 -10.29621 -10.02723 -9.74681 -9.57525 -9.34654 -9.08189 -8.87412 -8.57588 -8.46750 -6.77298 -5.88173 -3.32055 1.75708 2.34557 2.67322 2.86101 3.28175 3.32151 3.38997 3.40087 4.15292 4.19874 4.39658 4.40496 4.55381 4.76018 4.83149 4.94664 5.05639 5.10388 5.15609 5.29627 5.30218 5.36078 5.43624 5.47615 5.61925 5.67024 5.79007 5.80691 5.86715 5.89191 5.97394 6.05100 6.09196 6.23508 6.27043 6.40310 6.52808 6.63282 6.67989 6.71154 6.78065 6.91085 7.02899 7.42677 7.59233 7.64640 7.67335 7.83422 8.28595 8.30088 9.07179 9.70121 10.27390 11.19839 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019995 B = 0.002605 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.984950 B =10746.855897 C =11421.409324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 H 0.104 0.896 4 C 0.517 3.483 5 O -0.525 6.525 6 N -0.714 5.714 7 C 0.140 3.860 8 C 0.078 3.922 9 C -0.161 4.161 10 C 0.160 3.840 11 N -0.590 5.590 12 C -0.255 4.255 13 H 0.068 0.932 14 C 0.004 3.996 15 N -0.901 5.901 16 Si 0.902 3.098 17 H -0.287 1.287 18 H -0.288 1.288 19 H -0.279 1.279 20 C 0.109 3.891 21 C 0.046 3.954 22 O -0.385 6.385 23 C 0.088 3.912 24 C -0.226 4.226 25 C 0.040 3.960 26 N -0.300 5.300 27 N -0.376 5.376 28 C 0.100 3.900 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.401 0.599 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.029 0.971 39 H 0.096 0.904 40 H 0.256 0.744 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.155 0.845 46 H 0.182 0.818 47 H 0.073 0.927 48 H 0.088 0.912 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 9.241 17.549 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 H 0.122 0.878 4 C 0.301 3.699 5 O -0.401 6.401 6 N -0.366 5.366 7 C 0.017 3.983 8 C 0.037 3.963 9 C -0.219 4.219 10 C 0.034 3.966 11 N -0.314 5.314 12 C -0.384 4.384 13 H 0.085 0.915 14 C -0.195 4.195 15 N -0.545 5.545 16 Si 0.732 3.268 17 H -0.214 1.214 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.018 4.018 21 C -0.032 4.032 22 O -0.304 6.304 23 C -0.039 4.039 24 C -0.255 4.255 25 C -0.146 4.146 26 N -0.122 5.122 27 N -0.160 5.160 28 C -0.042 4.042 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.236 0.764 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.172 0.828 46 H 0.199 0.801 47 H 0.091 0.909 48 H 0.107 0.893 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.929 9.135 18.823 21.127 hybrid contribution -1.130 -0.475 -1.662 2.065 sum -4.058 8.660 17.161 19.646 Atomic orbital electron populations 1.21769 0.91133 1.03835 1.02935 1.19778 0.97925 0.99722 0.89524 0.87847 1.19987 0.80771 0.84946 0.84230 1.90740 1.37233 1.25878 1.86285 1.45954 1.53366 1.32053 1.05265 1.21360 0.99929 0.95653 0.81383 1.22555 0.92618 0.84795 0.96342 1.22203 0.95914 1.02452 1.01324 1.21281 0.98696 0.94601 0.82061 1.43991 1.63430 1.06959 1.17027 1.19144 1.19923 0.91354 1.08019 0.91463 1.25054 0.97599 0.97713 0.99116 1.70010 1.30814 1.06231 1.47425 0.86285 0.81470 0.78875 0.80183 1.21389 1.21433 1.20411 1.21600 0.97322 0.87592 0.95259 1.23030 0.98487 0.93575 0.88078 1.87819 1.68709 1.25976 1.47917 1.20271 1.01940 0.93613 0.88082 1.21436 1.11028 0.95004 0.98059 1.23872 0.99756 0.96984 0.93949 1.77313 1.22706 0.95838 1.16337 1.48382 1.51594 1.06695 1.09305 1.21814 1.03602 0.75710 1.03075 0.91512 0.90998 0.91103 0.76372 0.89866 0.90791 0.90775 0.91805 0.94030 0.95265 0.88563 0.93402 0.92050 0.95668 0.90227 0.93389 0.82756 0.80100 0.90852 0.89332 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.07 37.16 0.34 -0.73 16 2 C -0.05 -0.46 2.92 -92.92 -0.27 -0.73 16 3 H 0.10 0.80 6.95 -51.93 -0.36 0.44 16 4 C 0.52 6.93 7.08 -10.98 -0.08 6.85 16 5 O -0.53 -9.04 13.76 5.56 0.08 -8.96 16 6 N -0.71 -9.24 5.08 -60.29 -0.31 -9.55 16 7 C 0.14 2.26 4.85 -4.04 -0.02 2.24 16 8 C 0.08 1.37 0.78 -90.47 -0.07 1.30 16 9 C -0.16 -2.56 7.86 37.16 0.29 -2.27 16 10 C 0.16 3.61 4.11 -3.53 -0.01 3.60 16 11 N -0.59 -13.97 2.56 -171.82 -0.44 -14.41 16 12 C -0.26 -6.63 9.65 -15.06 -0.15 -6.77 16 13 H 0.07 1.71 7.88 -52.48 -0.41 1.30 16 14 C 0.00 0.11 4.95 -17.43 -0.09 0.03 16 15 N -0.90 -25.21 11.14 55.49 0.62 -24.59 16 16 Si 0.90 20.87 29.58 -169.99 -5.03 15.84 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.11 2.16 6.73 -3.53 -0.02 2.14 16 21 C 0.05 0.76 6.60 37.31 0.25 1.00 16 22 O -0.38 -6.72 10.17 -35.23 -0.36 -7.08 16 23 C 0.09 1.07 5.72 -82.26 -0.47 0.60 16 24 C -0.23 -3.04 9.14 -40.01 -0.37 -3.40 16 25 C 0.04 0.49 12.03 -17.37 -0.21 0.28 16 26 N -0.30 -4.02 12.57 30.62 0.39 -3.63 16 27 N -0.38 -4.36 4.01 -63.88 -0.26 -4.61 16 28 C 0.10 0.70 11.27 59.85 0.67 1.37 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.46 7.56 -51.93 -0.39 0.06 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.40 4.37 6.42 -40.82 -0.26 4.11 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.31 6.11 -51.92 -0.32 0.99 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.04 0.53 6.59 -51.93 -0.34 0.18 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 2.40 6.16 -51.93 -0.32 2.08 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.76 6.26 -51.93 -0.32 0.43 16 45 H 0.15 2.19 6.83 -52.48 -0.36 1.83 16 46 H 0.18 1.68 8.06 -52.49 -0.42 1.25 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 0.43 6.98 -51.93 -0.36 0.07 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -32.88 386.44 -7.34 -40.23 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.65 Total: 5.44 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -0.20 Total: 5.50 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.00 Total: -56.79 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.28 Total: -16.04 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.88 -7.34 -40.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107951809.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.545 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds