Wall clock time and date at job start Tue Mar 31 2020 19:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47096 * 2 1 4 4 C 1.50704 * 109.46881 * 240.00009 * 2 1 3 5 5 O 1.21275 * 120.00212 * 239.99522 * 4 2 1 6 6 N 1.34779 * 119.99941 * 60.00581 * 4 2 1 7 7 C 1.46497 * 119.99905 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46813 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.51505 * 304.90032 * 8 7 6 10 10 C 1.53298 * 109.55442 * 184.76850 * 8 7 6 11 11 N 1.47151 * 108.38467 * 187.74910 * 10 8 7 12 12 C 1.36933 * 120.98034 * 230.55553 * 11 10 8 13 13 H 1.08004 * 119.99835 * 153.30360 * 12 11 10 14 14 C 1.38817 * 120.00467 * 333.30764 * 12 11 10 15 15 N 1.31619 * 119.99654 * 343.55139 * 14 12 11 16 16 Si 1.86796 * 120.00056 * 163.55185 * 14 12 11 17 17 H 1.48496 * 109.47112 * 94.83196 * 16 14 12 18 18 H 1.48498 * 109.47020 * 214.83071 * 16 14 12 19 19 H 1.48497 * 109.47184 * 334.83052 * 16 14 12 20 20 C 1.47151 * 118.03597 * 50.53995 * 11 10 8 21 21 C 1.53294 * 108.38487 * 309.46342 * 20 11 10 22 22 O 1.42962 * 109.51277 * 65.00403 * 8 7 6 23 23 C 1.50696 * 109.46854 * 120.00599 * 2 1 3 24 24 C 1.35315 * 126.13349 * 84.68887 * 23 2 1 25 25 C 1.39868 * 107.92333 * 179.89937 * 24 23 2 26 26 N 1.30832 * 108.20053 * 0.36791 * 25 24 23 27 27 N 1.34952 * 126.12611 * 264.99374 * 23 2 1 28 28 C 1.46508 * 126.03422 * 359.97438 * 27 23 2 29 29 H 1.08999 * 109.47047 * 299.99300 * 1 2 3 30 30 H 1.09000 * 109.46968 * 60.00009 * 1 2 3 31 31 H 1.09003 * 109.47008 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99732 * 359.97438 * 6 4 2 33 33 H 1.09003 * 109.47425 * 59.99713 * 7 6 4 34 34 H 1.09000 * 109.47135 * 299.99763 * 7 6 4 35 35 H 1.09010 * 109.47184 * 180.10491 * 9 8 7 36 36 H 1.08998 * 109.47124 * 300.09822 * 9 8 7 37 37 H 1.08998 * 109.47470 * 60.10430 * 9 8 7 38 38 H 1.09000 * 109.68350 * 307.47961 * 10 8 7 39 39 H 1.09003 * 109.67500 * 67.98925 * 10 8 7 40 40 H 0.97002 * 120.00107 * 179.97438 * 15 14 12 41 41 H 1.08998 * 109.68306 * 189.73649 * 20 11 10 42 42 H 1.09005 * 109.67737 * 69.18539 * 20 11 10 43 43 H 1.08993 * 109.51453 * 172.22607 * 21 20 11 44 44 H 1.08999 * 109.50743 * 292.33075 * 21 20 11 45 45 H 1.08003 * 126.03323 * 0.03701 * 24 23 2 46 46 H 1.07999 * 125.89792 * 180.14665 * 25 24 23 47 47 H 1.08994 * 109.47450 * 89.99450 * 28 27 23 48 48 H 1.09004 * 109.46849 * 209.99806 * 28 27 23 49 49 H 1.09002 * 109.47082 * 329.99011 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2499 -2.4546 7 6 2.1955 -0.9402 -3.6508 8 6 1.6849 -0.2192 -4.9000 9 6 0.1599 -0.1121 -4.8408 10 6 2.0949 -1.0061 -6.1501 11 7 1.7581 -0.2021 -7.3357 12 6 1.0430 -0.7401 -8.3721 13 1 0.4421 -0.1013 -9.0025 14 6 1.0902 -2.1064 -8.6127 15 7 2.0457 -2.8362 -8.0772 16 14 -0.2022 -2.9092 -9.6964 17 1 0.3070 -3.0018 -11.0883 18 1 -0.4989 -4.2719 -9.1863 19 1 -1.4420 -2.0923 -9.6762 20 6 2.2122 1.1970 -7.3743 21 6 1.7966 1.8766 -6.0646 22 8 2.2536 1.0910 -4.9611 23 6 2.0323 -0.7105 1.2304 24 6 2.2028 -2.0459 1.3669 25 6 2.6860 -2.2886 2.6568 26 7 2.7939 -1.1407 3.2754 27 7 2.3871 -0.1295 2.3956 28 6 2.3528 1.3056 2.6886 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.1489 0.5386 -2.5435 33 1 1.8325 -1.9680 -3.6510 34 1 3.2855 -0.9398 -3.6506 35 1 -0.2033 0.4000 -5.7320 36 1 -0.2730 -1.1113 -4.7943 37 1 -0.1307 0.4514 -3.9542 38 1 3.1679 -1.1967 -6.1284 39 1 1.5546 -1.9522 -6.1818 40 1 2.0786 -3.7910 -8.2449 41 1 1.7491 1.7101 -8.2172 42 1 3.2970 1.2282 -7.4760 43 1 2.2413 2.8704 -6.0130 44 1 0.7105 1.9612 -6.0271 45 1 2.0034 -2.7923 0.6121 46 1 2.9250 -3.2565 3.0719 47 1 1.3790 1.5690 3.1013 48 1 3.1315 1.5474 3.4120 49 1 2.5225 1.8681 1.7705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107951809.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:24 Heat of formation + Delta-G solvation = 5.439848 kcal Electronic energy + Delta-G solvation = -30195.451714 eV Core-core repulsion = 26159.641053 eV Total energy + Delta-G solvation = -4035.810661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.38191 -41.05845 -40.14037 -36.54101 -35.92617 -35.31723 -33.89119 -33.21837 -32.95675 -30.02109 -29.53897 -28.05439 -27.54398 -27.34771 -25.39925 -24.94804 -23.03239 -22.24874 -21.72400 -20.62473 -20.11407 -18.92930 -18.05228 -17.96925 -17.40697 -16.82902 -16.62983 -16.41405 -16.06161 -16.05093 -15.55997 -15.42409 -15.28078 -15.09791 -14.66767 -14.62549 -14.44280 -14.13023 -13.91312 -13.66876 -13.43886 -13.24047 -13.17289 -13.09816 -12.97395 -12.89107 -12.76848 -12.51137 -12.40372 -12.27319 -12.14835 -11.91930 -11.83230 -11.61983 -11.11187 -10.85244 -10.69610 -10.47795 -10.21348 -10.07261 -9.38604 -8.69552 -7.88516 -5.35589 0.85971 1.46235 1.48589 1.55247 1.57786 1.64017 1.90148 2.23715 2.49494 2.82059 3.26503 3.32684 3.52514 3.68161 3.76833 3.96970 4.04676 4.07444 4.09474 4.13959 4.36659 4.45257 4.46387 4.49150 4.60312 4.66658 4.69243 4.71095 4.75211 4.76160 4.82890 4.88658 4.90074 5.00441 5.07646 5.15393 5.22153 5.23707 5.31770 5.40378 5.41135 5.56361 5.63248 5.75548 6.10687 6.31119 6.40018 6.56668 6.73659 7.08565 7.25676 7.77930 8.31800 9.17016 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019995 B = 0.002605 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.984950 B =10746.855897 C =11421.409324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 H 0.137 0.863 4 C 0.515 3.485 5 O -0.569 6.569 6 N -0.700 5.700 7 C 0.151 3.849 8 C 0.094 3.906 9 C -0.153 4.153 10 C 0.167 3.833 11 N -0.607 5.607 12 C -0.258 4.258 13 H 0.074 0.926 14 C -0.050 4.050 15 N -0.936 5.936 16 Si 0.965 3.035 17 H -0.289 1.289 18 H -0.295 1.295 19 H -0.265 1.265 20 C 0.100 3.900 21 C 0.054 3.946 22 O -0.385 6.385 23 C 0.088 3.912 24 C -0.257 4.257 25 C 0.032 3.968 26 N -0.327 5.327 27 N -0.374 5.374 28 C 0.086 3.914 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.415 0.585 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.083 0.917 38 H -0.011 1.011 39 H 0.066 0.934 40 H 0.250 0.750 41 H 0.071 0.929 42 H 0.010 0.990 43 H 0.117 0.883 44 H 0.063 0.937 45 H 0.137 0.863 46 H 0.201 0.799 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 12.484 18.663 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.058 4.058 3 H 0.155 0.845 4 C 0.301 3.699 5 O -0.447 6.447 6 N -0.353 5.353 7 C 0.026 3.974 8 C 0.053 3.947 9 C -0.211 4.211 10 C 0.041 3.959 11 N -0.331 5.331 12 C -0.388 4.388 13 H 0.091 0.909 14 C -0.245 4.245 15 N -0.583 5.583 16 Si 0.793 3.207 17 H -0.216 1.216 18 H -0.221 1.221 19 H -0.189 1.189 20 C -0.025 4.025 21 C -0.024 4.024 22 O -0.304 6.304 23 C -0.040 4.040 24 C -0.287 4.287 25 C -0.152 4.152 26 N -0.149 5.149 27 N -0.158 5.158 28 C -0.054 4.054 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.254 0.746 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.007 0.993 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.028 0.972 43 H 0.135 0.865 44 H 0.081 0.919 45 H 0.155 0.845 46 H 0.218 0.782 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.975 12.456 19.957 24.046 hybrid contribution -0.420 -1.410 -2.048 2.521 sum -5.394 11.046 17.909 21.722 Atomic orbital electron populations 1.21805 0.88926 1.03552 1.05023 1.19829 0.99445 1.00272 0.86241 0.84493 1.20649 0.79799 0.84390 0.85068 1.90741 1.39177 1.27925 1.86895 1.45710 1.53294 1.32182 1.04129 1.20976 0.98625 0.95352 0.82423 1.22174 0.94085 0.84287 0.94120 1.22116 0.93724 1.02579 1.02635 1.21052 0.95819 0.94512 0.84560 1.44250 1.63460 1.08413 1.16978 1.19499 1.19528 0.91605 1.08120 0.90871 1.25796 0.99406 0.98419 1.00925 1.70182 1.32740 1.05945 1.49384 0.85295 0.79627 0.77619 0.78132 1.21634 1.22111 1.18899 1.21836 0.96490 0.85972 0.98211 1.23095 0.99719 0.94254 0.85306 1.87830 1.69070 1.25401 1.48116 1.20549 1.01056 0.93459 0.88955 1.21464 1.13059 0.95813 0.98330 1.24220 0.99420 0.97860 0.93720 1.77249 1.23763 0.96469 1.17429 1.48724 1.50401 1.07967 1.08670 1.22250 1.05124 0.73294 1.04707 0.89457 0.88850 0.92654 0.74619 0.91086 0.92916 0.92083 0.92602 0.89844 0.99275 0.91582 0.94115 0.91029 0.97211 0.86480 0.91867 0.84510 0.78208 0.88667 0.88932 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.07 71.98 0.65 -0.92 16 2 C -0.03 -0.59 2.92 -12.29 -0.04 -0.63 16 3 H 0.14 1.44 6.95 -2.39 -0.02 1.42 16 4 C 0.52 13.12 7.08 87.66 0.62 13.74 16 5 O -0.57 -19.93 13.76 -3.01 -0.04 -19.97 16 6 N -0.70 -16.70 5.08 -463.06 -2.35 -19.06 16 7 C 0.15 4.91 4.85 86.38 0.42 5.32 16 8 C 0.09 3.26 0.78 -10.69 -0.01 3.25 16 9 C -0.15 -4.51 7.86 71.98 0.57 -3.95 16 10 C 0.17 7.82 4.11 86.36 0.35 8.18 16 11 N -0.61 -29.00 2.56 -697.53 -1.79 -30.79 16 12 C -0.26 -13.46 9.65 84.04 0.81 -12.65 16 13 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 14 C -0.05 -2.71 4.95 84.86 0.42 -2.29 16 15 N -0.94 -54.62 11.14 21.65 0.24 -54.38 16 16 Si 0.97 43.49 29.58 68.60 2.03 45.52 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 C 0.10 3.89 6.73 86.35 0.58 4.47 16 21 C 0.05 1.59 6.60 72.08 0.48 2.06 16 22 O -0.38 -12.56 10.17 -148.98 -1.52 -14.07 16 23 C 0.09 2.01 5.72 41.40 0.24 2.25 16 24 C -0.26 -7.02 9.14 21.99 0.20 -6.82 16 25 C 0.03 0.80 12.03 85.24 1.02 1.83 16 26 N -0.33 -8.51 12.57 -57.03 -0.72 -9.23 16 27 N -0.37 -7.93 4.01 -356.01 -1.43 -9.36 16 28 C 0.09 0.91 11.27 127.77 1.44 2.35 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.71 7.56 -2.39 -0.02 0.70 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.42 7.38 6.42 -92.71 -0.59 6.78 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.99 6.11 -2.38 -0.01 1.98 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.75 6.59 -2.39 -0.02 1.73 16 38 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H 0.07 3.48 6.16 -2.39 -0.01 3.46 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.07 2.59 7.96 -2.39 -0.02 2.57 16 42 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 43 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.06 1.73 6.26 -2.39 -0.01 1.72 16 45 H 0.14 4.13 6.83 -2.91 -0.02 4.12 16 46 H 0.20 3.79 8.06 -2.91 -0.02 3.77 16 47 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.11 0.62 6.98 -2.39 -0.02 0.60 16 Total: -1.00 -75.73 386.44 2.55 -73.18 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.36 Total: 21.96 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 7.76 Total: 16.20 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -6.05 Total: -122.82 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -1.56 Total: -34.04 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -75.73 2.55 -73.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107951809.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.619 kcal (2) G-P(sol) polarization free energy of solvation -75.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds