Wall clock time and date at job start Tue Mar 31 2020 19:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46779 * 2 1 4 4 C 1.52999 * 109.47260 * 240.00419 * 2 1 3 5 5 C 1.50705 * 109.47042 * 64.99852 * 4 2 1 6 6 C 1.34662 * 126.59215 * 85.02661 * 5 4 2 7 7 N 1.34128 * 108.02073 * 179.97438 * 6 5 4 8 8 C 1.30502 * 109.25745 * 0.02562 * 7 6 5 9 9 N 1.35046 * 108.69558 * 359.76489 * 8 7 6 10 10 H 0.96996 * 126.39374 * 180.26865 * 9 8 7 11 11 C 1.50690 * 109.47352 * 120.00344 * 2 1 3 12 12 O 1.21281 * 120.00360 * 120.00113 * 11 2 1 13 13 N 1.34783 * 119.99899 * 300.00040 * 11 2 1 14 14 C 1.46504 * 120.00025 * 179.97438 * 13 11 2 15 15 C 1.53000 * 109.46953 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.51013 * 59.90348 * 15 14 13 17 17 C 1.53299 * 109.51163 * 179.97438 * 15 14 13 18 18 N 1.47144 * 108.38377 * 172.22855 * 17 15 14 19 19 C 1.36942 * 120.98439 * 129.49117 * 18 17 15 20 20 H 1.07993 * 119.99855 * 206.21947 * 19 18 17 21 21 C 1.38809 * 119.99729 * 26.21590 * 19 18 17 22 22 N 1.31618 * 120.00213 * 16.92174 * 21 19 18 23 23 Si 1.86792 * 120.00056 * 196.92299 * 21 19 18 24 24 H 1.48506 * 109.47191 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47588 * 120.00288 * 23 21 19 26 26 H 1.48507 * 109.47181 * 240.00248 * 23 21 19 27 27 C 1.47161 * 118.03710 * 309.46762 * 18 17 15 28 28 C 1.53293 * 108.38333 * 50.53707 * 27 18 17 29 29 O 1.42958 * 109.51477 * 299.75074 * 15 14 13 30 30 H 1.08996 * 109.47310 * 300.00045 * 1 2 3 31 31 H 1.08997 * 109.47092 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47075 * 60.00073 * 1 2 3 33 33 H 1.08991 * 109.47353 * 184.99755 * 4 2 1 34 34 H 1.08998 * 109.47267 * 305.00086 * 4 2 1 35 35 H 1.07997 * 125.99259 * 359.96725 * 6 5 4 36 36 H 1.07994 * 125.64795 * 180.02562 * 8 7 6 37 37 H 0.96993 * 119.99765 * 0.02562 * 13 11 2 38 38 H 1.08997 * 109.46955 * 300.00110 * 14 13 11 39 39 H 1.08997 * 109.46856 * 60.00253 * 14 13 11 40 40 H 1.09000 * 109.47242 * 59.99406 * 16 15 14 41 41 H 1.09002 * 109.47011 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.46951 * 299.99539 * 16 15 14 43 43 H 1.09002 * 109.68254 * 291.95749 * 17 15 14 44 44 H 1.09007 * 109.67560 * 52.50553 * 17 15 14 45 45 H 0.96998 * 120.00484 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.68183 * 170.26138 * 27 18 17 47 47 H 1.09001 * 109.67532 * 290.77239 * 27 18 17 48 48 H 1.09000 * 109.51314 * 67.62111 * 28 27 18 49 49 H 1.08996 * 109.50836 * 187.72496 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0573 -2.4766 6 6 2.3074 1.0928 -3.0219 7 7 1.6242 1.5038 -4.1005 8 6 0.5598 0.7626 -4.2440 9 7 0.5350 -0.1556 -3.2541 10 1 -0.1411 -0.8378 -3.1186 11 6 2.0324 -0.7104 1.2303 12 8 2.7297 -1.6965 1.1190 13 7 1.7068 -0.2500 2.4545 14 6 2.1947 -0.9410 3.6507 15 6 1.6853 -0.2193 4.8999 16 6 0.1552 -0.2156 4.8997 17 6 2.1948 -0.9420 6.1522 18 7 1.8517 -0.1285 7.3293 19 6 1.2154 -0.6825 8.4080 20 1 0.6045 -0.0654 9.0501 21 6 1.3556 -2.0373 8.6760 22 7 2.3353 -2.7198 8.1221 23 14 0.1539 -2.8918 9.8226 24 1 -0.8476 -1.9101 10.3111 25 1 -0.5380 -3.9831 9.0907 26 1 0.8923 -3.4616 10.9783 27 6 2.2130 1.2980 7.3135 28 6 1.7025 1.9114 6.0047 29 8 2.1671 1.1266 4.9037 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 3.1263 -0.7993 -1.2057 34 1 1.6054 -1.7197 -1.2953 35 1 3.2299 1.5180 -2.6550 36 1 -0.1768 0.8639 -5.0273 37 1 1.1488 0.5384 2.5435 38 1 1.8310 -1.9685 3.6504 39 1 3.2846 -0.9413 3.6508 40 1 -0.2107 -1.2423 4.8990 41 1 -0.2070 0.2983 5.7902 42 1 -0.2067 0.2997 4.0100 43 1 1.7197 -1.9199 6.2306 44 1 3.2765 -1.0626 6.0918 45 1 2.4335 -3.6664 8.3096 46 1 1.7499 1.8034 8.1610 47 1 3.2964 1.4028 7.3708 48 1 0.6126 1.9230 6.0088 49 1 2.0771 2.9306 5.9099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108270363.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:57 Heat of formation + Delta-G solvation = -28.653462 kcal Electronic energy + Delta-G solvation = -29765.722714 eV Core-core repulsion = 25728.433656 eV Total energy + Delta-G solvation = -4037.289058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.95636 -41.21797 -40.29730 -36.59232 -36.05880 -35.86983 -33.37921 -33.22362 -33.04475 -30.92735 -29.57341 -28.06553 -27.35179 -27.32009 -25.00886 -24.37906 -22.80808 -22.41269 -21.70540 -20.95861 -20.21630 -18.94882 -18.81444 -18.07708 -17.45540 -16.89775 -16.82764 -16.40608 -16.12848 -15.89056 -15.60002 -15.37880 -15.33297 -15.13522 -14.82267 -14.67362 -14.43254 -14.28634 -14.02068 -13.78854 -13.51541 -13.33605 -13.18305 -13.13552 -12.92154 -12.81104 -12.53447 -12.43209 -12.27726 -12.12186 -12.10934 -11.94986 -11.83363 -11.14971 -10.92530 -10.89976 -10.84210 -10.70472 -10.50018 -10.08129 -9.27773 -8.71985 -7.90031 -5.36745 1.13055 1.44641 1.47186 1.57043 1.65456 2.10743 2.26393 2.37746 2.48556 2.80173 3.24661 3.50397 3.60365 3.84826 3.89641 3.93559 4.00463 4.03360 4.11885 4.24664 4.34542 4.42698 4.46465 4.49610 4.58727 4.65369 4.67206 4.72193 4.73681 4.80562 4.80775 4.89992 4.97762 5.05702 5.10564 5.12977 5.20132 5.21496 5.36712 5.38925 5.41535 5.54002 5.61818 5.81872 6.29283 6.37756 6.57343 6.61506 7.06852 7.18216 7.25938 7.76123 8.29981 9.15712 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.023182 B = 0.002282 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.565000 B =12265.292819 C =12676.998491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.115 0.885 4 C -0.019 4.019 5 C -0.010 4.010 6 C -0.048 4.048 7 N -0.539 5.539 8 C 0.190 3.810 9 N -0.555 5.555 10 H 0.433 0.567 11 C 0.513 3.487 12 O -0.586 6.586 13 N -0.704 5.704 14 C 0.149 3.851 15 C 0.094 3.906 16 C -0.152 4.152 17 C 0.166 3.834 18 N -0.607 5.607 19 C -0.257 4.257 20 H 0.074 0.926 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.966 3.034 24 H -0.263 1.263 25 H -0.290 1.290 26 H -0.296 1.296 27 C 0.101 3.899 28 C 0.053 3.947 29 O -0.385 6.385 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.168 0.832 36 H 0.243 0.757 37 H 0.414 0.586 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.067 0.933 44 H -0.009 1.009 45 H 0.250 0.750 46 H 0.071 0.929 47 H 0.011 0.989 48 H 0.061 0.939 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.073 8.052 -20.829 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.133 0.867 4 C -0.058 4.058 5 C -0.127 4.127 6 C -0.195 4.195 7 N -0.259 5.259 8 C -0.094 4.094 9 N -0.160 5.160 10 H 0.274 0.726 11 C 0.301 3.699 12 O -0.466 6.466 13 N -0.356 5.356 14 C 0.024 3.976 15 C 0.053 3.947 16 C -0.209 4.209 17 C 0.040 3.960 18 N -0.331 5.331 19 C -0.387 4.387 20 H 0.091 0.909 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.794 3.206 24 H -0.187 1.187 25 H -0.217 1.217 26 H -0.223 1.223 27 C -0.024 4.024 28 C -0.024 4.024 29 O -0.304 6.304 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.185 0.815 36 H 0.259 0.741 37 H 0.251 0.749 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.009 0.991 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.029 0.971 48 H 0.080 0.920 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.178 7.968 -21.496 24.341 hybrid contribution -0.678 -1.618 1.956 2.627 sum -8.856 6.350 -19.540 22.374 Atomic orbital electron populations 1.21798 0.91239 1.02984 1.03727 1.21268 0.98831 1.01134 0.90286 0.86731 1.19723 1.02050 0.97047 0.86985 1.21053 0.91668 1.01973 0.97994 1.22298 1.02653 0.98687 0.95890 1.70266 1.07213 1.28823 1.19555 1.25665 0.99351 0.89057 0.95377 1.43305 1.21166 1.28879 1.22664 0.72590 1.21180 0.79308 0.84081 0.85335 1.90700 1.39967 1.28509 1.87409 1.45826 1.53179 1.32039 1.04583 1.21004 0.98622 0.95333 0.82630 1.22183 0.94659 0.83567 0.94295 1.22104 0.93874 1.02464 1.02501 1.21072 0.95366 0.94988 0.84611 1.44266 1.68499 1.05244 1.15104 1.19537 1.21142 0.92826 1.05160 0.90858 1.25790 0.98875 0.98976 1.00985 1.70189 1.31207 1.08145 1.48741 0.85229 0.78840 0.78472 0.78049 1.18730 1.21656 1.22329 1.21826 0.96961 0.85510 0.98137 1.23095 0.99154 0.94639 0.85517 1.87824 1.73221 1.22268 1.47088 0.90929 0.91978 0.90648 0.89795 0.90372 0.81490 0.74148 0.74894 0.91039 0.92982 0.92640 0.92093 0.90254 0.91485 0.99128 0.94083 0.91014 0.97088 0.92037 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.90 71.98 0.64 -1.02 16 2 C -0.09 -1.53 2.71 -11.54 -0.03 -1.56 16 3 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 4 C -0.02 -0.31 4.59 29.85 0.14 -0.18 16 5 C -0.01 -0.16 5.57 40.95 0.23 0.07 16 6 C -0.05 -0.94 11.79 83.52 0.98 0.05 16 7 N -0.54 -11.02 11.25 -200.32 -2.25 -13.28 16 8 C 0.19 2.31 13.04 180.26 2.35 4.66 16 9 N -0.56 -5.67 5.79 -186.49 -1.08 -6.75 16 10 H 0.43 1.76 8.96 -92.71 -0.83 0.93 16 11 C 0.51 12.96 7.15 87.65 0.63 13.59 16 12 O -0.59 -19.90 15.92 -3.03 -0.05 -19.95 16 13 N -0.70 -17.75 5.05 -463.06 -2.34 -20.08 16 14 C 0.15 4.96 4.82 86.38 0.42 5.37 16 15 C 0.09 3.33 0.76 -10.69 -0.01 3.32 16 16 C -0.15 -4.68 7.92 71.98 0.57 -4.11 16 17 C 0.17 7.87 4.11 86.36 0.36 8.23 16 18 N -0.61 -29.32 2.57 -697.53 -1.79 -31.12 16 19 C -0.26 -13.52 9.65 84.03 0.81 -12.71 16 20 H 0.07 3.72 7.88 -2.91 -0.02 3.69 16 21 C -0.05 -2.77 4.94 84.86 0.42 -2.35 16 22 N -0.94 -54.75 11.14 21.65 0.24 -54.50 16 23 Si 0.97 43.65 29.59 68.60 2.03 45.68 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 25 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 26 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 27 C 0.10 3.98 6.74 86.35 0.58 4.57 16 28 C 0.05 1.64 6.60 72.08 0.48 2.11 16 29 O -0.38 -12.98 9.99 -148.98 -1.49 -14.47 16 30 H 0.07 0.78 7.56 -2.39 -0.02 0.76 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.74 7.08 -2.38 -0.02 0.73 16 33 H 0.08 1.65 7.95 -2.39 -0.02 1.63 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.24 0.80 8.06 -2.91 -0.02 0.78 16 37 H 0.41 8.44 6.61 -92.71 -0.61 7.82 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 2.06 6.12 -2.39 -0.01 2.05 16 42 H 0.08 1.84 6.86 -2.39 -0.02 1.82 16 43 H 0.07 3.55 6.14 -2.39 -0.01 3.54 16 44 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 46 H 0.07 2.64 7.96 -2.39 -0.02 2.62 16 47 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.06 1.77 6.26 -2.39 -0.01 1.75 16 49 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -74.38 389.00 1.36 -73.02 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -0.47 Total: 21.41 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 8.56 Total: 20.04 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -7.22 Total: -125.73 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.54 Total: -34.42 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -74.38 1.36 -73.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108270363.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.370 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds