Wall clock time and date at job start Tue Mar 31 2020 19:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46828 * 2 1 4 4 C 1.52999 * 109.46790 * 240.00394 * 2 1 3 5 5 C 1.50700 * 109.47441 * 65.00090 * 4 2 1 6 6 C 1.34669 * 126.58953 * 274.68319 * 5 4 2 7 7 N 1.34131 * 108.01938 * 179.87317 * 6 5 4 8 8 C 1.30501 * 109.25511 * 0.40212 * 7 6 5 9 9 N 1.35046 * 108.69741 * 359.75400 * 8 7 6 10 10 H 0.97002 * 126.39404 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47002 * 120.00595 * 2 1 3 12 12 O 1.21276 * 120.00129 * 120.00028 * 11 2 1 13 13 N 1.34784 * 119.99899 * 299.99521 * 11 2 1 14 14 C 1.46491 * 119.99994 * 180.02562 * 13 11 2 15 15 C 1.53004 * 109.47051 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.51091 * 305.00023 * 15 14 13 17 17 C 1.53292 * 109.51380 * 184.89877 * 15 14 13 18 18 N 1.47150 * 108.38749 * 187.77206 * 17 15 14 19 19 C 1.36925 * 120.98715 * 230.51148 * 18 17 15 20 20 H 1.08005 * 120.00562 * 153.32038 * 19 18 17 21 21 C 1.38820 * 119.99936 * 333.32547 * 19 18 17 22 22 N 1.31614 * 120.00123 * 343.55274 * 21 19 18 23 23 Si 1.86804 * 120.00087 * 163.55047 * 21 19 18 24 24 H 1.48499 * 109.46958 * 60.00092 * 23 21 19 25 25 H 1.48501 * 109.46874 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47297 * 300.00150 * 23 21 19 27 27 C 1.47158 * 118.03177 * 50.53349 * 18 17 15 28 28 C 1.53293 * 108.38737 * 309.46595 * 27 18 17 29 29 O 1.42958 * 109.26290 * 52.27633 * 28 27 18 30 30 H 1.08999 * 109.46910 * 59.99582 * 1 2 3 31 31 H 1.08992 * 109.46845 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46831 * 299.99842 * 1 2 3 33 33 H 1.09001 * 109.47021 * 185.00438 * 4 2 1 34 34 H 1.09002 * 109.47243 * 304.99427 * 4 2 1 35 35 H 1.08002 * 125.98997 * 0.02562 * 6 5 4 36 36 H 1.07995 * 125.64888 * 179.77635 * 8 7 6 37 37 H 0.97006 * 119.99447 * 0.02562 * 13 11 2 38 38 H 1.09001 * 109.47242 * 299.99743 * 14 13 11 39 39 H 1.08995 * 109.47588 * 60.00398 * 14 13 11 40 40 H 1.08999 * 109.47565 * 59.99699 * 16 15 14 41 41 H 1.09001 * 109.47076 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.47200 * 299.99910 * 16 15 14 43 43 H 1.09001 * 109.68131 * 307.49572 * 17 15 14 44 44 H 1.09003 * 109.68374 * 68.01204 * 17 15 14 45 45 H 0.96995 * 120.00360 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.68344 * 69.19406 * 27 18 17 47 47 H 1.09002 * 109.68085 * 189.74054 * 27 18 17 48 48 H 1.08997 * 109.51314 * 172.22624 * 28 27 18 49 49 H 1.09004 * 109.51123 * 292.33260 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 6 0.4686 -0.0251 -3.1336 7 7 0.5106 0.8299 -4.1662 8 6 1.6680 1.4327 -4.1790 9 7 2.4038 0.9792 -3.1414 10 1 3.3044 1.2557 -2.9101 11 6 2.0324 -0.7105 1.2304 12 8 2.7296 -1.6966 1.1190 13 7 1.7068 -0.2501 2.4546 14 6 2.1955 -0.9404 3.6506 15 6 1.6850 -0.2196 4.8999 16 6 2.0882 1.2550 4.8397 17 6 2.2940 -0.8664 6.1491 18 7 1.6479 -0.2834 7.3357 19 6 2.3929 0.2132 8.3716 20 1 1.9892 0.9910 9.0030 21 6 3.6672 -0.2830 8.6105 22 7 4.0398 -1.4255 8.0737 23 14 4.8532 0.6708 9.6936 24 1 4.2689 0.8266 11.0498 25 1 6.1385 -0.0668 9.7895 26 1 5.0952 2.0112 9.1019 27 6 0.1772 -0.2502 7.3762 28 6 -0.3287 0.3666 6.0672 29 8 0.2605 -0.3229 4.9622 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1263 -0.7995 -1.2057 34 1 1.6054 -1.7198 -1.2952 35 1 -0.3612 -0.6654 -2.8730 36 1 1.9847 2.1719 -4.8998 37 1 1.1489 0.5385 2.5435 38 1 1.8325 -1.9682 3.6508 39 1 3.2855 -0.9401 3.6506 40 1 1.6534 1.7147 3.9522 41 1 1.7246 1.7677 5.7302 42 1 3.1745 1.3331 4.7941 43 1 2.1197 -1.9422 6.1276 44 1 3.3656 -0.6687 6.1796 45 1 4.9300 -1.7725 8.2409 46 1 -0.2102 -1.2638 7.4782 47 1 -0.1532 0.3562 8.2195 48 1 -1.4137 0.2749 6.0170 49 1 -0.0502 1.4198 6.0294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108270364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:03 Heat of formation + Delta-G solvation = -6.208564 kcal Electronic energy + Delta-G solvation = -29763.472186 eV Core-core repulsion = 25727.156412 eV Total energy + Delta-G solvation = -4036.315774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.34378 -40.00414 -38.90299 -35.32615 -34.90940 -34.37273 -32.75932 -31.79022 -31.29284 -29.96748 -27.99189 -26.85101 -26.59561 -25.71275 -23.40166 -23.22046 -21.75571 -21.25843 -20.97627 -19.96813 -18.71395 -18.13002 -17.30187 -16.89985 -16.02412 -15.74522 -15.51225 -15.14070 -15.03793 -14.60350 -14.43149 -14.25344 -14.00103 -13.84022 -13.70549 -13.54630 -13.22912 -13.05399 -12.79575 -12.70691 -12.45999 -12.23937 -11.96110 -11.63832 -11.53663 -11.34843 -11.23343 -11.04632 -10.84712 -10.71844 -10.35480 -10.31085 -10.29886 -10.23806 -10.03174 -9.73226 -9.55609 -9.08018 -8.86275 -8.62020 -8.57713 -6.77570 -5.88411 -3.32332 1.73843 2.70496 2.82042 2.88714 3.29720 3.33360 3.37840 3.38086 4.20574 4.37163 4.40054 4.51671 4.59923 4.65824 4.91589 5.06136 5.09273 5.16210 5.27738 5.30181 5.41889 5.44075 5.47933 5.53978 5.59907 5.62891 5.83046 5.87848 5.89813 5.94310 5.97832 6.05390 6.05700 6.10060 6.27136 6.41031 6.46356 6.54037 6.64764 6.71413 6.78489 7.02905 7.06616 7.42323 7.62566 7.66689 7.78118 7.84417 8.29062 8.31396 9.06936 9.69835 10.27314 11.19586 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.002307 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.388493 B =12133.911149 C =12661.978047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 H 0.092 0.908 4 C -0.026 4.026 5 C -0.015 4.015 6 C -0.023 4.023 7 N -0.495 5.495 8 C 0.178 3.822 9 N -0.567 5.567 10 H 0.419 0.581 11 C 0.513 3.487 12 O -0.545 6.545 13 N -0.715 5.715 14 C 0.139 3.861 15 C 0.078 3.922 16 C -0.161 4.161 17 C 0.160 3.840 18 N -0.590 5.590 19 C -0.255 4.255 20 H 0.067 0.933 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.904 3.096 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.109 3.891 28 C 0.046 3.954 29 O -0.384 6.384 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.169 0.831 36 H 0.206 0.794 37 H 0.401 0.599 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.030 0.970 44 H 0.096 0.904 45 H 0.256 0.744 46 H 0.026 0.974 47 H 0.061 0.939 48 H 0.080 0.920 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.841 6.765 -19.059 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 H 0.110 0.890 4 C -0.065 4.065 5 C -0.131 4.131 6 C -0.171 4.171 7 N -0.214 5.214 8 C -0.105 4.105 9 N -0.171 5.171 10 H 0.257 0.743 11 C 0.298 3.702 12 O -0.423 6.423 13 N -0.367 5.367 14 C 0.015 3.985 15 C 0.037 3.963 16 C -0.219 4.219 17 C 0.033 3.967 18 N -0.314 5.314 19 C -0.385 4.385 20 H 0.085 0.915 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.733 3.267 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.210 1.210 27 C -0.018 4.018 28 C -0.032 4.032 29 O -0.303 6.303 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.186 0.814 36 H 0.223 0.777 37 H 0.237 0.763 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.048 0.952 44 H 0.114 0.886 45 H 0.067 0.933 46 H 0.044 0.956 47 H 0.080 0.920 48 H 0.098 0.902 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.963 5.970 -19.774 21.243 hybrid contribution 1.634 1.042 1.593 2.509 sum -3.329 7.012 -18.181 19.768 Atomic orbital electron populations 1.21870 0.92361 1.03209 1.03062 1.21250 0.98299 1.00445 0.92578 0.88970 1.19853 1.02113 0.97711 0.86865 1.21311 0.94120 0.98204 0.99460 1.22136 0.97679 1.02435 0.94841 1.70292 1.19404 1.10082 1.21594 1.24958 0.88865 1.02992 0.93715 1.43338 1.16700 1.33003 1.24039 0.74315 1.20488 0.80313 0.84698 0.84655 1.90707 1.38320 1.26399 1.86894 1.46043 1.53057 1.32064 1.05510 1.21347 0.98997 0.96507 0.81646 1.22540 0.82044 0.95350 0.96348 1.22201 1.01867 0.96505 1.01323 1.21286 0.98708 0.94589 0.82095 1.43981 0.99039 1.71392 1.16983 1.19110 0.97221 1.14080 1.08055 0.91481 1.25055 0.99643 0.95646 0.99140 1.69994 1.19649 1.17437 1.47481 0.86356 0.80522 0.79382 0.80432 1.20816 1.21531 1.21005 1.21601 0.86621 0.98260 0.95269 1.23032 0.96441 0.95669 0.88036 1.87822 1.19775 1.74921 1.47788 0.90944 0.91674 0.91899 0.90183 0.88556 0.81365 0.77728 0.76315 0.90802 0.90071 0.94054 0.90768 0.91919 0.95239 0.88609 0.93347 0.95633 0.92046 0.90173 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.77 37.16 0.33 -0.91 16 2 C -0.10 -0.96 2.71 -91.77 -0.25 -1.21 16 3 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.03 -0.24 4.59 -27.88 -0.13 -0.37 16 5 C -0.02 -0.13 6.08 -81.60 -0.50 -0.63 16 6 C -0.02 -0.23 10.12 -17.81 -0.18 -0.41 16 7 N -0.49 -5.35 11.25 -14.66 -0.16 -5.51 16 8 C 0.18 1.35 13.04 -90.37 -1.18 0.17 16 9 N -0.57 -3.82 6.15 -10.30 -0.06 -3.88 16 10 H 0.42 1.64 8.96 -40.82 -0.37 1.27 16 11 C 0.51 6.76 7.15 -10.98 -0.08 6.68 16 12 O -0.55 -9.21 15.92 5.56 0.09 -9.12 16 13 N -0.72 -9.55 5.09 -60.30 -0.31 -9.86 16 14 C 0.14 2.28 4.85 -4.04 -0.02 2.27 16 15 C 0.08 1.40 0.78 -90.47 -0.07 1.33 16 16 C -0.16 -2.65 7.86 37.16 0.29 -2.35 16 17 C 0.16 3.64 4.11 -3.54 -0.01 3.63 16 18 N -0.59 -14.09 2.57 -171.83 -0.44 -14.53 16 19 C -0.26 -6.68 9.65 -15.06 -0.15 -6.82 16 20 H 0.07 1.72 7.88 -52.48 -0.41 1.30 16 21 C 0.00 0.11 4.95 -17.43 -0.09 0.03 16 22 N -0.90 -25.33 11.14 55.49 0.62 -24.72 16 23 Si 0.90 20.97 29.58 -169.99 -5.03 15.94 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 C 0.11 2.19 6.74 -3.53 -0.02 2.16 16 28 C 0.05 0.77 6.60 37.31 0.25 1.02 16 29 O -0.38 -6.84 10.17 -35.23 -0.36 -7.20 16 30 H 0.07 0.57 6.20 -51.93 -0.32 0.25 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.52 7.56 -51.93 -0.39 0.12 16 33 H 0.08 0.75 7.95 -51.93 -0.41 0.34 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.17 1.44 8.03 -52.49 -0.42 1.02 16 36 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.40 4.70 6.41 -40.82 -0.26 4.44 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.04 0.55 6.58 -51.93 -0.34 0.21 16 41 H 0.07 1.34 6.12 -51.93 -0.32 1.03 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.10 2.41 6.16 -51.93 -0.32 2.09 16 45 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 48 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 49 H 0.05 0.77 6.26 -51.93 -0.33 0.44 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -32.88 386.92 -9.30 -42.18 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.67 Total: 6.28 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -1.81 Total: 4.58 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.36 Total: -58.50 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.27 Total: -16.32 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.88 -9.30 -42.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108270364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.970 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds