Wall clock time and date at job start Tue Mar 31 2020 19:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46828 * 2 1 4 4 C 1.52999 * 109.46790 * 240.00394 * 2 1 3 5 5 C 1.50700 * 109.47441 * 65.00090 * 4 2 1 6 6 C 1.34669 * 126.58953 * 274.68319 * 5 4 2 7 7 N 1.34131 * 108.01938 * 179.87317 * 6 5 4 8 8 C 1.30501 * 109.25511 * 0.40212 * 7 6 5 9 9 N 1.35046 * 108.69741 * 359.75400 * 8 7 6 10 10 H 0.97002 * 126.39404 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47002 * 120.00595 * 2 1 3 12 12 O 1.21276 * 120.00129 * 120.00028 * 11 2 1 13 13 N 1.34784 * 119.99899 * 299.99521 * 11 2 1 14 14 C 1.46491 * 119.99994 * 180.02562 * 13 11 2 15 15 C 1.53004 * 109.47051 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.51091 * 305.00023 * 15 14 13 17 17 C 1.53292 * 109.51380 * 184.89877 * 15 14 13 18 18 N 1.47150 * 108.38749 * 187.77206 * 17 15 14 19 19 C 1.36925 * 120.98715 * 230.51148 * 18 17 15 20 20 H 1.08005 * 120.00562 * 153.32038 * 19 18 17 21 21 C 1.38820 * 119.99936 * 333.32547 * 19 18 17 22 22 N 1.31614 * 120.00123 * 343.55274 * 21 19 18 23 23 Si 1.86804 * 120.00087 * 163.55047 * 21 19 18 24 24 H 1.48499 * 109.46958 * 60.00092 * 23 21 19 25 25 H 1.48501 * 109.46874 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47297 * 300.00150 * 23 21 19 27 27 C 1.47158 * 118.03177 * 50.53349 * 18 17 15 28 28 C 1.53293 * 108.38737 * 309.46595 * 27 18 17 29 29 O 1.42958 * 109.26290 * 52.27633 * 28 27 18 30 30 H 1.08999 * 109.46910 * 59.99582 * 1 2 3 31 31 H 1.08992 * 109.46845 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46831 * 299.99842 * 1 2 3 33 33 H 1.09001 * 109.47021 * 185.00438 * 4 2 1 34 34 H 1.09002 * 109.47243 * 304.99427 * 4 2 1 35 35 H 1.08002 * 125.98997 * 0.02562 * 6 5 4 36 36 H 1.07995 * 125.64888 * 179.77635 * 8 7 6 37 37 H 0.97006 * 119.99447 * 0.02562 * 13 11 2 38 38 H 1.09001 * 109.47242 * 299.99743 * 14 13 11 39 39 H 1.08995 * 109.47588 * 60.00398 * 14 13 11 40 40 H 1.08999 * 109.47565 * 59.99699 * 16 15 14 41 41 H 1.09001 * 109.47076 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.47200 * 299.99910 * 16 15 14 43 43 H 1.09001 * 109.68131 * 307.49572 * 17 15 14 44 44 H 1.09003 * 109.68374 * 68.01204 * 17 15 14 45 45 H 0.96995 * 120.00360 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.68344 * 69.19406 * 27 18 17 47 47 H 1.09002 * 109.68085 * 189.74054 * 27 18 17 48 48 H 1.08997 * 109.51314 * 172.22624 * 28 27 18 49 49 H 1.09004 * 109.51123 * 292.33260 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 6 0.4686 -0.0251 -3.1336 7 7 0.5106 0.8299 -4.1662 8 6 1.6680 1.4327 -4.1790 9 7 2.4038 0.9792 -3.1414 10 1 3.3044 1.2557 -2.9101 11 6 2.0324 -0.7105 1.2304 12 8 2.7296 -1.6966 1.1190 13 7 1.7068 -0.2501 2.4546 14 6 2.1955 -0.9404 3.6506 15 6 1.6850 -0.2196 4.8999 16 6 2.0882 1.2550 4.8397 17 6 2.2940 -0.8664 6.1491 18 7 1.6479 -0.2834 7.3357 19 6 2.3929 0.2132 8.3716 20 1 1.9892 0.9910 9.0030 21 6 3.6672 -0.2830 8.6105 22 7 4.0398 -1.4255 8.0737 23 14 4.8532 0.6708 9.6936 24 1 4.2689 0.8266 11.0498 25 1 6.1385 -0.0668 9.7895 26 1 5.0952 2.0112 9.1019 27 6 0.1772 -0.2502 7.3762 28 6 -0.3287 0.3666 6.0672 29 8 0.2605 -0.3229 4.9622 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1263 -0.7995 -1.2057 34 1 1.6054 -1.7198 -1.2952 35 1 -0.3612 -0.6654 -2.8730 36 1 1.9847 2.1719 -4.8998 37 1 1.1489 0.5385 2.5435 38 1 1.8325 -1.9682 3.6508 39 1 3.2855 -0.9401 3.6506 40 1 1.6534 1.7147 3.9522 41 1 1.7246 1.7677 5.7302 42 1 3.1745 1.3331 4.7941 43 1 2.1197 -1.9422 6.1276 44 1 3.3656 -0.6687 6.1796 45 1 4.9300 -1.7725 8.2409 46 1 -0.2102 -1.2638 7.4782 47 1 -0.1532 0.3562 8.2195 48 1 -1.4137 0.2749 6.0170 49 1 -0.0502 1.4198 6.0294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108270364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:02 Heat of formation + Delta-G solvation = -28.200233 kcal Electronic energy + Delta-G solvation = -29764.425816 eV Core-core repulsion = 25727.156412 eV Total energy + Delta-G solvation = -4037.269404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.96079 -41.22809 -40.29970 -36.60032 -36.06678 -35.88375 -33.43263 -33.23564 -33.05211 -30.71609 -29.56759 -28.08747 -27.53122 -27.31616 -25.00473 -24.31808 -22.81673 -22.32264 -21.70829 -21.01672 -20.24012 -18.94490 -18.78447 -18.07816 -17.44305 -16.92904 -16.89272 -16.36451 -16.11106 -15.86277 -15.62582 -15.37024 -15.36466 -15.16857 -14.80817 -14.61083 -14.49991 -14.34406 -13.98873 -13.66248 -13.50621 -13.38137 -13.19144 -13.05239 -12.91710 -12.75939 -12.52841 -12.44490 -12.23503 -12.18671 -12.10024 -11.94696 -11.84184 -11.14538 -10.97674 -10.89336 -10.81872 -10.67783 -10.49454 -10.09176 -9.26934 -8.71232 -7.89794 -5.37052 1.12469 1.46218 1.47728 1.54774 1.64325 2.10600 2.26317 2.38125 2.48585 2.80025 3.24769 3.50424 3.59831 3.84304 3.91459 3.92531 4.01415 4.03147 4.10845 4.25147 4.38764 4.42428 4.44088 4.46889 4.57934 4.65234 4.66938 4.71862 4.78052 4.79561 4.86201 4.94144 4.96857 5.05428 5.12050 5.13051 5.21217 5.30205 5.36196 5.39067 5.41347 5.53889 5.61300 5.82197 6.29527 6.37940 6.56102 6.60333 7.07009 7.17649 7.24917 7.76201 8.30424 9.15672 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.002307 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.388493 B =12133.911149 C =12661.978047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.114 0.886 4 C -0.019 4.019 5 C -0.016 4.016 6 C -0.040 4.040 7 N -0.538 5.538 8 C 0.188 3.812 9 N -0.558 5.558 10 H 0.433 0.567 11 C 0.513 3.487 12 O -0.585 6.585 13 N -0.705 5.705 14 C 0.149 3.851 15 C 0.094 3.906 16 C -0.153 4.153 17 C 0.167 3.833 18 N -0.607 5.607 19 C -0.260 4.260 20 H 0.073 0.927 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.275 1.275 27 C 0.101 3.899 28 C 0.053 3.947 29 O -0.384 6.384 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.171 0.829 36 H 0.242 0.758 37 H 0.413 0.587 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.055 0.945 43 H -0.009 1.009 44 H 0.067 0.933 45 H 0.250 0.750 46 H 0.011 0.989 47 H 0.071 0.929 48 H 0.117 0.883 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.706 9.554 -20.396 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.132 0.868 4 C -0.059 4.059 5 C -0.133 4.133 6 C -0.187 4.187 7 N -0.258 5.258 8 C -0.096 4.096 9 N -0.163 5.163 10 H 0.274 0.726 11 C 0.301 3.699 12 O -0.465 6.465 13 N -0.357 5.357 14 C 0.024 3.976 15 C 0.053 3.947 16 C -0.210 4.210 17 C 0.040 3.960 18 N -0.331 5.331 19 C -0.389 4.389 20 H 0.091 0.909 21 C -0.245 4.245 22 N -0.582 5.582 23 Si 0.795 3.205 24 H -0.202 1.202 25 H -0.224 1.224 26 H -0.200 1.200 27 C -0.024 4.024 28 C -0.024 4.024 29 O -0.304 6.304 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.188 0.812 36 H 0.258 0.742 37 H 0.251 0.749 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.009 0.991 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.029 0.971 47 H 0.090 0.910 48 H 0.135 0.865 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.862 8.801 -21.112 23.612 hybrid contribution 1.847 0.135 2.013 2.735 sum -4.014 8.936 -19.099 21.465 Atomic orbital electron populations 1.21848 0.91336 1.03073 1.03780 1.21210 0.98876 1.00834 0.90272 0.86768 1.19722 1.01698 0.97379 0.87053 1.21108 0.94097 0.98692 0.99363 1.22298 0.98403 1.02830 0.95189 1.70280 1.21390 1.11489 1.22622 1.25662 0.87914 1.02334 0.93652 1.43320 1.17215 1.32241 1.23514 0.72626 1.21192 0.79267 0.84123 0.85350 1.90698 1.40116 1.28322 1.87412 1.45876 1.53091 1.32154 1.04626 1.20986 0.98305 0.95693 0.82615 1.22177 0.82037 0.96199 0.94297 1.22105 1.01638 0.94823 1.02440 1.21063 0.97549 0.92888 0.84488 1.44239 1.00694 1.71204 1.16948 1.19466 0.97552 1.13724 1.08208 0.90913 1.25806 1.01309 0.96461 1.00942 1.70169 1.19553 1.19129 1.49390 0.85355 0.78002 0.78175 0.79010 1.20154 1.22389 1.20035 1.21825 0.84440 0.98078 0.98077 1.23096 0.98203 0.95728 0.85398 1.87834 1.19174 1.75362 1.48018 0.90117 0.92329 0.91199 0.90606 0.89538 0.81180 0.74220 0.74902 0.92785 0.91130 0.90278 0.92077 0.92617 0.99077 0.91517 0.94063 0.97075 0.91017 0.86514 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.77 71.99 0.63 -1.44 16 2 C -0.09 -1.49 2.71 -11.54 -0.03 -1.52 16 3 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.02 -0.32 4.59 29.85 0.14 -0.19 16 5 C -0.02 -0.25 6.08 40.95 0.25 0.00 16 6 C -0.04 -0.74 10.12 83.52 0.84 0.10 16 7 N -0.54 -10.79 11.25 -200.31 -2.25 -13.04 16 8 C 0.19 2.35 13.04 180.26 2.35 4.71 16 9 N -0.56 -6.10 6.15 -186.50 -1.15 -7.25 16 10 H 0.43 2.16 8.96 -92.71 -0.83 1.33 16 11 C 0.51 12.95 7.15 87.65 0.63 13.57 16 12 O -0.59 -19.84 15.92 -3.02 -0.05 -19.88 16 13 N -0.71 -17.77 5.09 -463.08 -2.36 -20.12 16 14 C 0.15 4.95 4.85 86.38 0.42 5.37 16 15 C 0.09 3.34 0.78 -10.70 -0.01 3.33 16 16 C -0.15 -4.72 7.86 71.98 0.57 -4.15 16 17 C 0.17 7.89 4.11 86.35 0.35 8.24 16 18 N -0.61 -29.33 2.57 -697.54 -1.79 -31.12 16 19 C -0.26 -13.67 9.65 84.04 0.81 -12.86 16 20 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 21 C -0.05 -2.70 4.95 84.86 0.42 -2.28 16 22 N -0.94 -54.68 11.14 21.65 0.24 -54.44 16 23 Si 0.97 43.58 29.58 68.60 2.03 45.61 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.10 4.00 6.74 86.35 0.58 4.58 16 28 C 0.05 1.64 6.60 72.08 0.48 2.11 16 29 O -0.38 -13.02 10.17 -148.98 -1.52 -14.54 16 30 H 0.08 1.09 6.20 -2.39 -0.01 1.07 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.93 7.56 -2.39 -0.02 0.91 16 33 H 0.08 1.34 7.95 -2.39 -0.02 1.32 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.17 2.83 8.03 -2.91 -0.02 2.81 16 36 H 0.24 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.41 8.41 6.41 -92.70 -0.59 7.82 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.08 1.84 6.58 -2.39 -0.02 1.82 16 41 H 0.06 2.08 6.12 -2.39 -0.01 2.06 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.07 3.53 6.16 -2.39 -0.01 3.52 16 45 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 46 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.07 2.64 7.96 -2.39 -0.02 2.62 16 48 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 49 H 0.06 1.76 6.26 -2.38 -0.01 1.75 16 Total: -1.00 -73.80 386.92 1.14 -72.67 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -0.45 Total: 22.55 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 8.43 Total: 19.57 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -7.30 Total: -125.97 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.56 Total: -34.42 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -73.80 1.14 -72.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108270364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.465 kcal (2) G-P(sol) polarization free energy of solvation -73.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds