Wall clock time and date at job start Tue Mar 31 2020 19:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46928 * 2 1 4 4 C 1.52996 * 109.47322 * 119.99990 * 2 1 3 5 5 C 1.50700 * 109.47597 * 294.99932 * 4 2 1 6 6 C 1.34659 * 126.59210 * 275.04550 * 5 4 2 7 7 N 1.34132 * 108.02233 * 179.97438 * 6 5 4 8 8 C 1.30500 * 109.25127 * 359.72420 * 7 6 5 9 9 N 1.35040 * 108.70326 * 0.44105 * 8 7 6 10 10 H 0.96999 * 126.39794 * 179.82007 * 9 8 7 11 11 C 1.50698 * 109.46926 * 240.00458 * 2 1 3 12 12 O 1.21284 * 119.99675 * 240.00127 * 11 2 1 13 13 N 1.34775 * 120.00292 * 59.99559 * 11 2 1 14 14 C 1.46497 * 119.99930 * 180.02562 * 13 11 2 15 15 C 1.53007 * 109.46983 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.50903 * 304.99657 * 15 14 13 17 17 C 1.53301 * 109.51204 * 184.89908 * 15 14 13 18 18 N 1.47148 * 108.38330 * 187.77107 * 17 15 14 19 19 C 1.36933 * 120.98283 * 230.51356 * 18 17 15 20 20 H 1.08005 * 120.00327 * 153.74428 * 19 18 17 21 21 C 1.38810 * 120.00009 * 333.74218 * 19 18 17 22 22 N 1.31625 * 120.00037 * 160.03875 * 21 19 18 23 23 Si 1.86798 * 120.00042 * 340.04210 * 21 19 18 24 24 H 1.48507 * 109.47128 * 91.88819 * 23 21 19 25 25 H 1.48496 * 109.47428 * 211.88377 * 23 21 19 26 26 H 1.48496 * 109.47022 * 331.88716 * 23 21 19 27 27 C 1.47153 * 118.03468 * 50.53253 * 18 17 15 28 28 C 1.53293 * 108.38616 * 309.46551 * 27 18 17 29 29 O 1.42955 * 109.26721 * 52.27810 * 28 27 18 30 30 H 1.09001 * 109.47077 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47040 * 299.99573 * 1 2 3 32 32 H 1.09000 * 109.47772 * 59.99620 * 1 2 3 33 33 H 1.09003 * 109.47255 * 174.99832 * 4 2 1 34 34 H 1.09003 * 109.46839 * 55.00167 * 4 2 1 35 35 H 1.08001 * 125.99282 * 359.95957 * 6 5 4 36 36 H 1.07996 * 125.64617 * 180.29480 * 8 7 6 37 37 H 0.97003 * 120.00029 * 0.02562 * 13 11 2 38 38 H 1.09003 * 109.47270 * 299.99921 * 14 13 11 39 39 H 1.08993 * 109.47442 * 60.00373 * 14 13 11 40 40 H 1.08996 * 109.47008 * 60.00052 * 16 15 14 41 41 H 1.08999 * 109.46995 * 179.97438 * 16 15 14 42 42 H 1.09001 * 109.47279 * 300.00354 * 16 15 14 43 43 H 1.09002 * 109.67680 * 307.49564 * 17 15 14 44 44 H 1.09001 * 109.67832 * 68.00827 * 17 15 14 45 45 H 0.97004 * 119.99948 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.68088 * 69.19053 * 27 18 17 47 47 H 1.09002 * 109.67987 * 189.73737 * 27 18 17 48 48 H 1.09002 * 109.51266 * 172.22658 * 28 27 18 49 49 H 1.08999 * 109.51151 * 292.32155 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4766 6 6 2.3069 1.0933 3.0212 7 7 1.6235 1.5046 4.0996 8 6 0.5568 0.7662 4.2405 9 7 0.5330 -0.1533 3.2518 10 1 -0.1450 -0.8332 3.1143 11 6 2.0322 -0.7103 -1.2305 12 8 2.7295 -1.6964 -1.1193 13 7 1.7066 -0.2499 -2.4546 14 6 2.1944 -0.9408 -3.6508 15 6 1.6850 -0.2190 -4.9000 16 6 0.1602 -0.1077 -4.8397 17 6 2.0917 -1.0089 -6.1493 18 7 1.7572 -0.2053 -7.3357 19 6 1.0405 -0.7422 -8.3717 20 1 0.4471 -0.1014 -9.0071 21 6 1.0766 -2.1100 -8.6052 22 7 0.1248 -2.6825 -9.3114 23 14 2.4761 -3.1383 -7.9170 24 1 2.0921 -3.6678 -6.5837 25 1 2.7575 -4.2699 -8.8366 26 1 3.6909 -2.2949 -7.7836 27 6 2.2161 1.1923 -7.3762 28 6 1.8033 1.8749 -6.0672 29 8 2.2572 1.0896 -4.9622 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3635 0.5139 -0.8899 33 1 3.1263 -0.7995 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 3.2293 1.5186 2.6542 36 1 -0.1831 0.8714 5.0201 37 1 1.1492 0.5390 -2.5436 38 1 3.2845 -0.9411 -3.6510 39 1 1.8307 -1.9682 -3.6507 40 1 -0.1282 0.4555 -3.9522 41 1 -0.2020 0.4069 -5.7297 42 1 -0.2755 -1.1058 -4.7940 43 1 3.1640 -1.2032 -6.1278 44 1 1.5481 -1.9532 -6.1796 45 1 0.1499 -3.6384 -9.4743 46 1 3.3009 1.2197 -7.4784 47 1 1.7545 1.7059 -8.2196 48 1 2.2515 2.8672 -6.0170 49 1 0.7176 1.9635 -6.0294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108270365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:07 Heat of formation + Delta-G solvation = 0.232313 kcal Electronic energy + Delta-G solvation = -29893.446640 eV Core-core repulsion = 25857.410163 eV Total energy + Delta-G solvation = -4036.036477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.38065 -40.17506 -39.16534 -35.45505 -35.06919 -34.58952 -32.71242 -32.01125 -31.63138 -30.27786 -28.48261 -26.80549 -26.72676 -25.87519 -23.69943 -23.46446 -21.86308 -21.26516 -20.94547 -20.05570 -19.14040 -18.21854 -17.42606 -17.04557 -16.25644 -15.94813 -15.58807 -15.41550 -15.19930 -14.73563 -14.64097 -14.35622 -14.11670 -13.99532 -13.88048 -13.74547 -13.44043 -13.29012 -12.90838 -12.69256 -12.51139 -12.39643 -12.29310 -11.91942 -11.67636 -11.59344 -11.47443 -11.43997 -11.12224 -10.90660 -10.43286 -10.31426 -10.27761 -10.24845 -9.92486 -9.74041 -9.56736 -9.44493 -9.02099 -8.66899 -8.62833 -7.08343 -6.05274 -3.42644 1.70088 2.59457 2.76847 2.86191 3.17618 3.23825 3.42789 3.44667 3.98517 4.30968 4.42535 4.43369 4.51645 4.56525 4.69196 4.79456 4.96945 5.06878 5.15275 5.17997 5.21290 5.26326 5.31456 5.33647 5.36557 5.47953 5.68675 5.71154 5.71570 5.74617 5.77737 5.86856 5.93823 5.99691 6.01375 6.17561 6.20474 6.40295 6.40496 6.43207 6.47409 6.55637 6.70055 7.02887 7.48889 7.57626 7.74997 7.78102 8.18588 8.20342 8.78016 9.58984 9.95083 11.10164 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.002445 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.203597 B =11450.352507 C =11897.062083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.103 0.897 4 C -0.026 4.026 5 C -0.014 4.014 6 C -0.024 4.024 7 N -0.494 5.494 8 C 0.179 3.821 9 N -0.567 5.567 10 H 0.419 0.581 11 C 0.515 3.485 12 O -0.545 6.545 13 N -0.715 5.715 14 C 0.134 3.866 15 C 0.089 3.911 16 C -0.164 4.164 17 C 0.108 3.892 18 N -0.603 5.603 19 C -0.261 4.261 20 H 0.089 0.911 21 C 0.025 3.975 22 N -0.905 5.905 23 Si 0.878 3.122 24 H -0.286 1.286 25 H -0.301 1.301 26 H -0.269 1.269 27 C 0.112 3.888 28 C 0.044 3.956 29 O -0.379 6.379 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.169 0.831 36 H 0.206 0.794 37 H 0.403 0.597 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.083 0.917 45 H 0.264 0.736 46 H 0.031 0.969 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.534 7.190 22.155 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 H 0.121 0.879 4 C -0.065 4.065 5 C -0.130 4.130 6 C -0.172 4.172 7 N -0.213 5.213 8 C -0.105 4.105 9 N -0.170 5.170 10 H 0.256 0.744 11 C 0.300 3.700 12 O -0.422 6.422 13 N -0.367 5.367 14 C 0.010 3.990 15 C 0.048 3.952 16 C -0.221 4.221 17 C -0.019 4.019 18 N -0.328 5.328 19 C -0.389 4.389 20 H 0.106 0.894 21 C -0.174 4.174 22 N -0.548 5.548 23 Si 0.708 3.292 24 H -0.214 1.214 25 H -0.229 1.229 26 H -0.194 1.194 27 C -0.014 4.014 28 C -0.034 4.034 29 O -0.299 6.299 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.186 0.814 36 H 0.223 0.777 37 H 0.239 0.761 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.101 0.899 45 H 0.074 0.926 46 H 0.049 0.951 47 H 0.090 0.910 48 H 0.104 0.896 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.704 7.084 22.749 23.837 hybrid contribution -0.307 -1.363 -0.596 1.519 sum -1.011 5.721 22.153 22.902 Atomic orbital electron populations 1.21815 0.93012 1.02639 1.02819 1.21305 0.97575 1.01321 0.92528 0.87892 1.19852 1.02851 0.97000 0.86780 1.21267 0.91121 1.02495 0.98102 1.22140 1.02097 0.97667 0.95324 1.70294 1.05460 1.26941 1.18598 1.24963 0.99877 0.90317 0.95318 1.43359 1.21307 1.28842 1.23535 0.74368 1.20499 0.80243 0.84628 0.84595 1.90712 1.38137 1.26480 1.86884 1.45983 1.53371 1.31999 1.05340 1.21377 1.00020 0.95640 0.81933 1.22241 0.93275 0.84870 0.94858 1.22223 0.95057 1.02890 1.01974 1.21915 0.98648 0.95367 0.85922 1.44302 1.63929 1.08264 1.16295 1.18881 1.20489 0.92088 1.07426 0.89392 1.25248 0.97706 0.96771 0.97675 1.69817 1.31575 1.10816 1.42591 0.87055 0.84871 0.79955 0.77277 1.21413 1.22889 1.19441 1.21633 0.97498 0.86234 0.95988 1.23083 0.99082 0.93728 0.87510 1.87849 1.68515 1.25542 1.47979 0.92035 0.91812 0.91648 0.88383 0.90381 0.81394 0.77729 0.76117 0.90679 0.90055 0.93498 0.90226 0.91611 0.94619 0.89940 0.92622 0.95106 0.90997 0.89614 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.90 37.16 0.33 -0.69 16 2 C -0.11 -0.90 2.71 -91.78 -0.25 -1.15 16 3 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.03 -0.22 4.59 -27.89 -0.13 -0.34 16 5 C -0.01 -0.12 5.57 -81.60 -0.45 -0.57 16 6 C -0.02 -0.24 11.79 -17.81 -0.21 -0.45 16 7 N -0.49 -5.23 11.25 -14.67 -0.17 -5.40 16 8 C 0.18 1.28 13.04 -90.38 -1.18 0.10 16 9 N -0.57 -3.46 5.78 -10.30 -0.06 -3.52 16 10 H 0.42 1.39 8.96 -40.82 -0.37 1.03 16 11 C 0.51 6.35 7.15 -10.99 -0.08 6.27 16 12 O -0.54 -8.74 15.92 5.55 0.09 -8.65 16 13 N -0.72 -8.86 5.09 -60.29 -0.31 -9.17 16 14 C 0.13 2.06 4.85 -4.04 -0.02 2.04 16 15 C 0.09 1.49 0.78 -90.46 -0.07 1.42 16 16 C -0.16 -2.56 7.87 37.16 0.29 -2.27 16 17 C 0.11 2.27 3.05 -3.53 -0.01 2.26 16 18 N -0.60 -13.63 2.36 -171.83 -0.40 -14.03 16 19 C -0.26 -6.95 10.10 -15.06 -0.15 -7.10 16 20 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 21 C 0.03 0.71 5.26 -17.43 -0.09 0.62 16 22 N -0.91 -26.89 13.97 55.49 0.78 -26.12 16 23 Si 0.88 21.89 24.28 -169.99 -4.13 17.76 16 24 H -0.29 -6.84 6.58 56.52 0.37 -6.47 16 25 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 26 H -0.27 -6.68 6.54 56.52 0.37 -6.31 16 27 C 0.11 2.09 6.74 -3.53 -0.02 2.07 16 28 C 0.04 0.67 6.59 37.31 0.25 0.92 16 29 O -0.38 -6.24 10.17 -35.23 -0.36 -6.60 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.41 7.07 -51.92 -0.37 0.04 16 32 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 33 H 0.10 0.91 7.96 -51.93 -0.41 0.50 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 36 H 0.21 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.40 4.30 6.41 -40.82 -0.26 4.04 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.05 0.58 6.58 -51.93 -0.34 0.24 16 41 H 0.08 1.40 6.12 -51.93 -0.32 1.08 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.78 6.86 -51.93 -0.36 0.42 16 44 H 0.08 1.88 4.60 -51.93 -0.24 1.64 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 1.29 7.96 -51.93 -0.41 0.88 16 48 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 49 H 0.05 0.81 6.26 -51.93 -0.33 0.48 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -34.02 382.02 -8.24 -42.26 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.64 Total: 4.58 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.80 Total: 3.13 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.16 Total: -58.24 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.27 Total: -15.25 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.13 Total: 17.76 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.02 -8.24 -42.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108270365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.496 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds