Wall clock time and date at job start Tue Mar 31 2020 19:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46928 * 2 1 4 4 C 1.52996 * 109.47322 * 119.99990 * 2 1 3 5 5 C 1.50700 * 109.47597 * 294.99932 * 4 2 1 6 6 C 1.34659 * 126.59210 * 275.04550 * 5 4 2 7 7 N 1.34132 * 108.02233 * 179.97438 * 6 5 4 8 8 C 1.30500 * 109.25127 * 359.72420 * 7 6 5 9 9 N 1.35040 * 108.70326 * 0.44105 * 8 7 6 10 10 H 0.96999 * 126.39794 * 179.82007 * 9 8 7 11 11 C 1.50698 * 109.46926 * 240.00458 * 2 1 3 12 12 O 1.21284 * 119.99675 * 240.00127 * 11 2 1 13 13 N 1.34775 * 120.00292 * 59.99559 * 11 2 1 14 14 C 1.46497 * 119.99930 * 180.02562 * 13 11 2 15 15 C 1.53007 * 109.46983 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.50903 * 304.99657 * 15 14 13 17 17 C 1.53301 * 109.51204 * 184.89908 * 15 14 13 18 18 N 1.47148 * 108.38330 * 187.77107 * 17 15 14 19 19 C 1.36933 * 120.98283 * 230.51356 * 18 17 15 20 20 H 1.08005 * 120.00327 * 153.74428 * 19 18 17 21 21 C 1.38810 * 120.00009 * 333.74218 * 19 18 17 22 22 N 1.31625 * 120.00037 * 160.03875 * 21 19 18 23 23 Si 1.86798 * 120.00042 * 340.04210 * 21 19 18 24 24 H 1.48507 * 109.47128 * 91.88819 * 23 21 19 25 25 H 1.48496 * 109.47428 * 211.88377 * 23 21 19 26 26 H 1.48496 * 109.47022 * 331.88716 * 23 21 19 27 27 C 1.47153 * 118.03468 * 50.53253 * 18 17 15 28 28 C 1.53293 * 108.38616 * 309.46551 * 27 18 17 29 29 O 1.42955 * 109.26721 * 52.27810 * 28 27 18 30 30 H 1.09001 * 109.47077 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47040 * 299.99573 * 1 2 3 32 32 H 1.09000 * 109.47772 * 59.99620 * 1 2 3 33 33 H 1.09003 * 109.47255 * 174.99832 * 4 2 1 34 34 H 1.09003 * 109.46839 * 55.00167 * 4 2 1 35 35 H 1.08001 * 125.99282 * 359.95957 * 6 5 4 36 36 H 1.07996 * 125.64617 * 180.29480 * 8 7 6 37 37 H 0.97003 * 120.00029 * 0.02562 * 13 11 2 38 38 H 1.09003 * 109.47270 * 299.99921 * 14 13 11 39 39 H 1.08993 * 109.47442 * 60.00373 * 14 13 11 40 40 H 1.08996 * 109.47008 * 60.00052 * 16 15 14 41 41 H 1.08999 * 109.46995 * 179.97438 * 16 15 14 42 42 H 1.09001 * 109.47279 * 300.00354 * 16 15 14 43 43 H 1.09002 * 109.67680 * 307.49564 * 17 15 14 44 44 H 1.09001 * 109.67832 * 68.00827 * 17 15 14 45 45 H 0.97004 * 119.99948 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.68088 * 69.19053 * 27 18 17 47 47 H 1.09002 * 109.67987 * 189.73737 * 27 18 17 48 48 H 1.09002 * 109.51266 * 172.22658 * 28 27 18 49 49 H 1.08999 * 109.51151 * 292.32155 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4766 6 6 2.3069 1.0933 3.0212 7 7 1.6235 1.5046 4.0996 8 6 0.5568 0.7662 4.2405 9 7 0.5330 -0.1533 3.2518 10 1 -0.1450 -0.8332 3.1143 11 6 2.0322 -0.7103 -1.2305 12 8 2.7295 -1.6964 -1.1193 13 7 1.7066 -0.2499 -2.4546 14 6 2.1944 -0.9408 -3.6508 15 6 1.6850 -0.2190 -4.9000 16 6 0.1602 -0.1077 -4.8397 17 6 2.0917 -1.0089 -6.1493 18 7 1.7572 -0.2053 -7.3357 19 6 1.0405 -0.7422 -8.3717 20 1 0.4471 -0.1014 -9.0071 21 6 1.0766 -2.1100 -8.6052 22 7 0.1248 -2.6825 -9.3114 23 14 2.4761 -3.1383 -7.9170 24 1 2.0921 -3.6678 -6.5837 25 1 2.7575 -4.2699 -8.8366 26 1 3.6909 -2.2949 -7.7836 27 6 2.2161 1.1923 -7.3762 28 6 1.8033 1.8749 -6.0672 29 8 2.2572 1.0896 -4.9622 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3635 0.5139 -0.8899 33 1 3.1263 -0.7995 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 3.2293 1.5186 2.6542 36 1 -0.1831 0.8714 5.0201 37 1 1.1492 0.5390 -2.5436 38 1 3.2845 -0.9411 -3.6510 39 1 1.8307 -1.9682 -3.6507 40 1 -0.1282 0.4555 -3.9522 41 1 -0.2020 0.4069 -5.7297 42 1 -0.2755 -1.1058 -4.7940 43 1 3.1640 -1.2032 -6.1278 44 1 1.5481 -1.9532 -6.1796 45 1 0.1499 -3.6384 -9.4743 46 1 3.3009 1.2197 -7.4784 47 1 1.7545 1.7059 -8.2196 48 1 2.2515 2.8672 -6.0170 49 1 0.7176 1.9635 -6.0294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108270365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:06 Heat of formation + Delta-G solvation = -23.959762 kcal Electronic energy + Delta-G solvation = -29894.495687 eV Core-core repulsion = 25857.410163 eV Total energy + Delta-G solvation = -4037.085524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.96448 -41.33657 -40.43096 -36.74709 -36.12758 -35.93105 -33.65138 -33.41910 -33.13154 -30.95833 -29.96536 -28.17647 -27.39939 -27.33293 -25.32138 -24.41854 -22.71195 -22.42051 -21.72619 -20.98437 -20.57835 -19.05803 -18.83661 -18.17009 -17.70851 -17.07385 -16.96247 -16.45659 -16.22127 -16.00049 -15.79446 -15.58467 -15.40467 -15.29999 -14.88643 -14.70161 -14.38446 -14.25145 -14.07337 -13.96692 -13.77504 -13.53073 -13.40977 -13.21563 -13.05496 -13.03170 -12.71154 -12.39003 -12.29570 -12.22074 -12.12424 -12.01256 -11.63767 -11.27685 -11.05520 -10.93574 -10.90559 -10.82312 -10.49643 -10.12997 -9.28447 -8.95969 -8.21245 -5.53282 1.12248 1.23052 1.36886 1.43143 1.62398 2.06835 2.25630 2.34497 2.36675 2.66947 2.98288 3.21496 3.56883 3.76003 3.83963 3.85151 3.89681 3.89936 3.98842 4.23109 4.29072 4.33226 4.40862 4.44032 4.46732 4.52582 4.60006 4.63387 4.66149 4.71184 4.72720 4.79129 4.81985 4.88005 4.89416 5.05164 5.09148 5.12194 5.19014 5.34092 5.36966 5.38742 5.77426 5.81399 6.07437 6.23764 6.52578 6.60370 6.80558 7.17526 7.21854 7.53112 7.94381 8.97970 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.002445 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.203597 B =11450.352507 C =11897.062083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.116 0.884 4 C -0.019 4.019 5 C -0.011 4.011 6 C -0.048 4.048 7 N -0.539 5.539 8 C 0.189 3.811 9 N -0.556 5.556 10 H 0.433 0.567 11 C 0.515 3.485 12 O -0.584 6.584 13 N -0.706 5.706 14 C 0.141 3.859 15 C 0.102 3.898 16 C -0.158 4.158 17 C 0.102 3.898 18 N -0.616 5.616 19 C -0.241 4.241 20 H 0.063 0.937 21 C -0.028 4.028 22 N -0.951 5.951 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.310 1.310 26 H -0.268 1.268 27 C 0.104 3.896 28 C 0.050 3.950 29 O -0.377 6.377 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.169 0.831 36 H 0.242 0.758 37 H 0.414 0.586 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.028 0.972 44 H 0.062 0.938 45 H 0.262 0.738 46 H 0.033 0.967 47 H 0.074 0.926 48 H 0.124 0.876 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 8.679 24.740 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.134 0.866 4 C -0.058 4.058 5 C -0.127 4.127 6 C -0.195 4.195 7 N -0.259 5.259 8 C -0.095 4.095 9 N -0.160 5.160 10 H 0.274 0.726 11 C 0.303 3.697 12 O -0.464 6.464 13 N -0.359 5.359 14 C 0.016 3.984 15 C 0.060 3.940 16 C -0.215 4.215 17 C -0.024 4.024 18 N -0.341 5.341 19 C -0.370 4.370 20 H 0.081 0.919 21 C -0.223 4.223 22 N -0.597 5.597 23 Si 0.761 3.239 24 H -0.200 1.200 25 H -0.239 1.239 26 H -0.193 1.193 27 C -0.021 4.021 28 C -0.027 4.027 29 O -0.296 6.296 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.186 0.814 36 H 0.258 0.742 37 H 0.252 0.748 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.051 0.949 47 H 0.093 0.907 48 H 0.142 0.858 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.209 8.615 25.367 26.817 hybrid contribution -0.156 -1.724 -1.395 2.223 sum -1.365 6.891 23.972 24.980 Atomic orbital electron populations 1.21809 0.91361 1.02968 1.03743 1.21270 0.98721 1.01228 0.90325 0.86599 1.19729 1.02105 0.97018 0.86958 1.21066 0.91637 1.01978 0.98051 1.22307 1.02701 0.98628 0.95858 1.70271 1.07154 1.28859 1.19577 1.25652 0.99319 0.89111 0.95417 1.43316 1.21009 1.28907 1.22814 0.72611 1.21146 0.79250 0.84051 0.85278 1.90702 1.39900 1.28381 1.87394 1.45845 1.53351 1.32118 1.04543 1.21102 0.99351 0.95387 0.82543 1.21965 0.94098 0.84607 0.93299 1.22159 0.93804 1.02775 1.02796 1.21925 0.97813 0.95266 0.87427 1.44407 1.63852 1.09871 1.15982 1.18834 1.19184 0.91633 1.07353 0.91944 1.25756 0.99511 0.98048 0.98988 1.69924 1.33422 1.10956 1.45382 0.86184 0.82349 0.78337 0.77044 1.20008 1.23922 1.19291 1.21882 0.97555 0.84231 0.98406 1.23141 0.99862 0.94572 0.85103 1.87872 1.68634 1.24997 1.48070 0.92031 0.90706 0.90908 0.89658 0.90423 0.81408 0.74235 0.74779 0.91752 0.90829 0.89760 0.92179 0.92482 0.95396 0.91997 0.92903 0.94923 0.90733 0.85819 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.90 71.98 0.64 -0.88 16 2 C -0.09 -1.37 2.71 -11.54 -0.03 -1.41 16 3 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 4 C -0.02 -0.29 4.59 29.85 0.14 -0.15 16 5 C -0.01 -0.16 5.57 40.95 0.23 0.07 16 6 C -0.05 -0.88 11.79 83.52 0.98 0.11 16 7 N -0.54 -10.62 11.25 -200.32 -2.25 -12.87 16 8 C 0.19 2.20 13.04 180.26 2.35 4.55 16 9 N -0.56 -5.28 5.78 -186.50 -1.08 -6.36 16 10 H 0.43 1.51 8.96 -92.71 -0.83 0.68 16 11 C 0.51 11.74 7.15 87.66 0.63 12.37 16 12 O -0.58 -18.22 15.92 -3.04 -0.05 -18.27 16 13 N -0.71 -15.77 5.09 -463.06 -2.35 -18.13 16 14 C 0.14 4.12 4.85 86.38 0.42 4.54 16 15 C 0.10 3.23 0.78 -10.69 -0.01 3.22 16 16 C -0.16 -4.59 7.87 71.98 0.57 -4.03 16 17 C 0.10 4.21 3.05 86.36 0.26 4.47 16 18 N -0.62 -27.56 2.36 -697.54 -1.64 -29.20 16 19 C -0.24 -13.02 10.10 84.03 0.85 -12.17 16 20 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 21 C -0.03 -1.58 5.26 84.86 0.45 -1.13 16 22 N -0.95 -58.12 13.97 21.65 0.30 -57.82 16 23 Si 0.93 46.14 24.28 68.60 1.67 47.81 16 24 H -0.27 -12.79 6.58 99.48 0.65 -12.13 16 25 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 26 H -0.27 -13.03 6.54 99.48 0.65 -12.37 16 27 C 0.10 3.71 6.74 86.35 0.58 4.29 16 28 C 0.05 1.40 6.59 72.08 0.48 1.87 16 29 O -0.38 -11.25 10.17 -148.98 -1.52 -12.77 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.68 7.07 -2.38 -0.02 0.66 16 32 H 0.07 0.70 7.56 -2.39 -0.02 0.68 16 33 H 0.08 1.53 7.96 -2.39 -0.02 1.51 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.24 0.71 8.06 -2.91 -0.02 0.68 16 37 H 0.41 7.34 6.41 -92.71 -0.59 6.75 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.08 1.79 6.58 -2.39 -0.02 1.78 16 41 H 0.06 2.01 6.12 -2.39 -0.01 1.99 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 44 H 0.06 2.82 4.60 -2.39 -0.01 2.80 16 45 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 46 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.07 2.59 7.96 -2.39 -0.02 2.57 16 48 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 49 H 0.06 1.62 6.26 -2.39 -0.01 1.60 16 Total: -1.00 -75.63 382.02 1.05 -74.58 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -0.55 Total: 17.31 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 8.53 Total: 15.73 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -7.03 Total: -124.39 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -1.56 Total: -31.04 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Total: -75.63 1.05 -74.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108270365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.621 kcal (2) G-P(sol) polarization free energy of solvation -75.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds