Wall clock time and date at job start Tue Mar 31 2020 19:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47327 * 2 1 4 4 C 1.52999 * 109.47438 * 120.00492 * 2 1 3 5 5 C 1.50697 * 109.46950 * 294.99818 * 4 2 1 6 6 C 1.34668 * 126.59194 * 85.02158 * 5 4 2 7 7 N 1.34131 * 108.02019 * 179.97438 * 6 5 4 8 8 C 1.30491 * 109.25580 * 0.02562 * 7 6 5 9 9 N 1.35045 * 108.70143 * 359.76358 * 8 7 6 10 10 H 0.97006 * 126.39731 * 180.26564 * 9 8 7 11 11 C 1.50708 * 109.46809 * 240.00168 * 2 1 3 12 12 O 1.21276 * 120.00004 * 240.00163 * 11 2 1 13 13 N 1.34773 * 119.99865 * 60.00268 * 11 2 1 14 14 C 1.46494 * 120.00181 * 180.02562 * 13 11 2 15 15 C 1.53000 * 109.47496 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.55516 * 60.12496 * 15 14 13 17 17 C 1.53292 * 109.51189 * 180.25345 * 15 14 13 18 18 N 1.47233 * 108.40299 * 172.22959 * 17 15 14 19 19 C 1.36938 * 121.03150 * 129.45891 * 18 17 15 20 20 H 1.07995 * 120.00241 * 206.17702 * 19 18 17 21 21 C 1.38816 * 119.99718 * 26.17954 * 19 18 17 22 22 N 1.31615 * 120.00526 * 16.89599 * 21 19 18 23 23 Si 1.86806 * 119.99896 * 196.89669 * 21 19 18 24 24 H 1.48504 * 109.46919 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47372 * 119.99555 * 23 21 19 26 26 H 1.48500 * 109.47051 * 240.00016 * 23 21 19 27 27 C 1.47151 * 117.98790 * 309.48233 * 18 17 15 28 28 C 1.53300 * 108.41429 * 50.51917 * 27 18 17 29 29 O 1.42962 * 109.22183 * 307.68047 * 28 27 18 30 30 H 1.09000 * 109.47489 * 59.99496 * 1 2 3 31 31 H 1.09005 * 109.47402 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46913 * 299.99574 * 1 2 3 33 33 H 1.09002 * 109.47168 * 54.99657 * 4 2 1 34 34 H 1.08999 * 109.47699 * 174.99520 * 4 2 1 35 35 H 1.07999 * 125.99178 * 359.96656 * 6 5 4 36 36 H 1.07999 * 125.65206 * 180.02562 * 8 7 6 37 37 H 0.97006 * 120.00217 * 359.97438 * 13 11 2 38 38 H 1.09004 * 109.47543 * 59.99407 * 14 13 11 39 39 H 1.09002 * 109.46900 * 300.00200 * 14 13 11 40 40 H 1.09005 * 109.47000 * 299.87605 * 16 15 14 41 41 H 1.09000 * 109.46959 * 59.86855 * 16 15 14 42 42 H 1.09000 * 109.47652 * 179.87596 * 16 15 14 43 43 H 1.09001 * 109.68446 * 291.94465 * 17 15 14 44 44 H 1.08991 * 109.68807 * 52.50281 * 17 15 14 45 45 H 0.97002 * 120.00383 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.67883 * 290.77953 * 27 18 17 47 47 H 1.08994 * 109.68171 * 170.26092 * 27 18 17 48 48 H 1.09004 * 109.51066 * 67.60375 * 28 27 18 49 49 H 1.09001 * 109.51236 * 187.70563 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 6 0.4667 -0.0215 3.1303 7 7 0.5108 0.8295 4.1662 8 6 1.6680 1.4325 4.1788 9 7 2.4056 0.9757 3.1440 10 1 3.3080 1.2487 2.9155 11 6 2.0323 -0.7104 -1.2306 12 8 2.7294 -1.6965 -1.1194 13 7 1.7066 -0.2499 -2.4546 14 6 2.1944 -0.9407 -3.6508 15 6 1.6840 -0.2197 -4.9000 16 6 2.1956 1.2222 -4.9040 17 6 2.1887 -0.9456 -6.1523 18 7 1.5357 -0.3498 -7.3298 19 6 2.2686 0.0606 -8.4113 20 1 1.8914 0.8421 -9.0540 21 6 3.4964 -0.5281 -8.6814 22 7 3.8110 -1.6790 -8.1257 23 14 4.7022 0.3131 -9.8337 24 1 4.1133 1.5853 -10.3236 25 1 5.9647 0.5993 -9.1062 26 1 4.9868 -0.5768 -10.9880 27 6 0.0712 -0.2081 -7.3094 28 6 -0.3304 0.4819 -6.0006 29 8 0.2543 -0.2191 -4.9004 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6054 -1.7199 1.2950 34 1 3.1263 -0.7997 1.2055 35 1 -0.3651 -0.6578 2.8667 36 1 1.9851 2.1711 4.9001 37 1 1.1487 0.5387 -2.5436 38 1 1.8307 -1.9683 -3.6507 39 1 3.2844 -0.9412 -3.6510 40 1 1.8327 1.7390 -4.0156 41 1 3.2856 1.2209 -4.9037 42 1 1.8331 1.7340 -5.7955 43 1 3.2693 -0.8289 -6.2339 44 1 1.9370 -2.0042 -6.0896 45 1 4.6691 -2.0902 -8.3141 46 1 -0.3937 -1.1926 -7.3630 47 1 -0.2510 0.3967 -8.1570 48 1 0.0268 1.5117 -6.0075 49 1 -1.4160 0.4737 -5.9029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108270366.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:12 Heat of formation + Delta-G solvation = -6.889410 kcal Electronic energy + Delta-G solvation = -29763.316107 eV Core-core repulsion = 25726.970809 eV Total energy + Delta-G solvation = -4036.345298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.34409 -39.99606 -38.90446 -35.31835 -34.89795 -34.36363 -32.76016 -31.81404 -31.29529 -29.96736 -27.99272 -26.85015 -26.57081 -25.71593 -23.39525 -23.21749 -21.75286 -21.26583 -20.98512 -19.96841 -18.71535 -18.12853 -17.29655 -16.89445 -16.04446 -15.72657 -15.50271 -15.14673 -15.03932 -14.59550 -14.42648 -14.24618 -14.00234 -13.83173 -13.69546 -13.56380 -13.23470 -13.04200 -12.78983 -12.73753 -12.46989 -12.24075 -11.94229 -11.63390 -11.53384 -11.34589 -11.23375 -11.06026 -10.87039 -10.70105 -10.35522 -10.29304 -10.27210 -10.24281 -10.03640 -9.73549 -9.55136 -9.08948 -8.85259 -8.61975 -8.58323 -6.78465 -5.88700 -3.31976 1.73879 2.70748 2.81894 2.89000 3.28901 3.32975 3.38434 3.39880 4.19612 4.37551 4.39860 4.52053 4.60303 4.66079 4.92046 5.06367 5.09600 5.16294 5.27886 5.30061 5.41767 5.43779 5.47703 5.54459 5.60601 5.63795 5.83302 5.87869 5.89879 5.94705 5.97997 6.05407 6.05913 6.10045 6.27318 6.41099 6.46436 6.53589 6.64641 6.71621 6.78254 7.02912 7.06625 7.42218 7.63461 7.67212 7.78185 7.83640 8.28389 8.31864 9.06532 9.69700 10.26859 11.19312 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022598 B = 0.002293 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.769117 B =12208.758363 C =12720.009601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 H 0.092 0.908 4 C -0.026 4.026 5 C -0.015 4.015 6 C -0.023 4.023 7 N -0.495 5.495 8 C 0.178 3.822 9 N -0.567 5.567 10 H 0.419 0.581 11 C 0.513 3.487 12 O -0.546 6.546 13 N -0.714 5.714 14 C 0.139 3.861 15 C 0.078 3.922 16 C -0.161 4.161 17 C 0.159 3.841 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.069 0.931 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.289 1.289 27 C 0.109 3.891 28 C 0.046 3.954 29 O -0.384 6.384 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.169 0.831 36 H 0.206 0.794 37 H 0.402 0.598 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.030 0.970 45 H 0.255 0.745 46 H 0.026 0.974 47 H 0.061 0.939 48 H 0.048 0.952 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 7.442 19.187 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.110 0.890 4 C -0.065 4.065 5 C -0.131 4.131 6 C -0.171 4.171 7 N -0.214 5.214 8 C -0.105 4.105 9 N -0.171 5.171 10 H 0.257 0.743 11 C 0.298 3.702 12 O -0.424 6.424 13 N -0.365 5.365 14 C 0.015 3.985 15 C 0.037 3.963 16 C -0.219 4.219 17 C 0.032 3.968 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.086 0.914 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.216 1.216 27 C -0.018 4.018 28 C -0.032 4.032 29 O -0.303 6.303 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.186 0.814 36 H 0.223 0.777 37 H 0.237 0.763 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.410 6.656 19.905 21.447 hybrid contribution 1.654 0.936 -1.627 2.502 sum -2.757 7.592 18.278 19.983 Atomic orbital electron populations 1.21873 0.92351 1.03212 1.03078 1.21246 0.98308 1.00430 0.92563 0.88981 1.19853 1.02102 0.97716 0.86870 1.21313 0.94012 0.98341 0.99428 1.22136 0.97646 1.02546 0.94760 1.70288 1.19482 1.10141 1.21458 1.24955 0.88880 1.02930 0.93767 1.43341 1.16508 1.33067 1.24176 0.74319 1.20489 0.80315 0.84702 0.84658 1.90707 1.38352 1.26409 1.86893 1.45986 1.53035 1.32046 1.05461 1.21362 0.98968 0.96492 0.81645 1.22540 0.81582 0.95772 0.96368 1.22204 1.01669 0.96631 1.01396 1.21308 0.99498 0.93736 0.82210 1.44023 0.99566 1.72779 1.15076 1.19197 1.00569 1.13837 1.04669 0.91359 1.25042 1.00115 0.95403 0.99016 1.70020 1.22554 1.15172 1.46785 0.86227 0.81281 0.79012 0.80289 1.20252 1.21478 1.21626 1.21598 0.86877 0.97964 0.95318 1.23034 0.96603 0.95378 0.88159 1.87811 1.19323 1.76344 1.46839 0.91866 0.91681 0.90947 0.88562 0.90193 0.81361 0.77730 0.76291 0.90834 0.90151 0.94016 0.91945 0.90791 0.88559 0.95238 0.93464 0.95638 0.92054 0.93419 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.77 37.16 0.33 -0.92 16 2 C -0.10 -0.96 2.71 -91.77 -0.25 -1.21 16 3 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.03 -0.24 4.60 -27.88 -0.13 -0.37 16 5 C -0.02 -0.13 6.09 -81.60 -0.50 -0.63 16 6 C -0.02 -0.23 10.10 -17.81 -0.18 -0.41 16 7 N -0.49 -5.35 11.25 -14.67 -0.17 -5.52 16 8 C 0.18 1.35 13.04 -90.38 -1.18 0.17 16 9 N -0.57 -3.81 6.15 -10.30 -0.06 -3.87 16 10 H 0.42 1.63 8.96 -40.82 -0.37 1.26 16 11 C 0.51 6.76 7.15 -10.98 -0.08 6.68 16 12 O -0.55 -9.22 15.92 5.56 0.09 -9.13 16 13 N -0.71 -9.53 5.05 -60.29 -0.30 -9.84 16 14 C 0.14 2.29 4.82 -4.04 -0.02 2.27 16 15 C 0.08 1.40 0.76 -90.47 -0.07 1.33 16 16 C -0.16 -2.65 7.92 37.16 0.29 -2.35 16 17 C 0.16 3.62 4.12 -3.49 -0.01 3.61 16 18 N -0.59 -14.09 2.57 -171.77 -0.44 -14.53 16 19 C -0.25 -6.63 9.65 -15.06 -0.15 -6.77 16 20 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 21 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 22 N -0.90 -25.33 11.14 55.49 0.62 -24.71 16 23 Si 0.90 20.97 29.59 -169.99 -5.03 15.94 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.11 2.18 6.73 -3.53 -0.02 2.16 16 28 C 0.05 0.77 6.60 37.31 0.25 1.02 16 29 O -0.38 -6.78 9.97 -35.23 -0.35 -7.13 16 30 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.58 6.18 -51.93 -0.32 0.25 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.75 7.96 -51.93 -0.41 0.33 16 35 H 0.17 1.45 8.02 -52.49 -0.42 1.03 16 36 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.40 4.72 6.62 -40.82 -0.27 4.45 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.04 0.56 6.88 -51.93 -0.36 0.21 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.34 6.11 -51.93 -0.32 1.02 16 43 H 0.10 2.43 6.14 -51.93 -0.32 2.11 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 48 H 0.05 0.77 6.25 -51.93 -0.32 0.45 16 49 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -32.90 387.14 -9.31 -42.20 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.69 Total: 6.18 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -1.80 Total: 4.57 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.36 Total: -58.47 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.26 Total: -16.26 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.90 -9.31 -42.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108270366.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.314 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds