Wall clock time and date at job start Tue Mar 31 2020 19:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47327 * 2 1 4 4 C 1.52999 * 109.47438 * 120.00492 * 2 1 3 5 5 C 1.50697 * 109.46950 * 294.99818 * 4 2 1 6 6 C 1.34668 * 126.59194 * 85.02158 * 5 4 2 7 7 N 1.34131 * 108.02019 * 179.97438 * 6 5 4 8 8 C 1.30491 * 109.25580 * 0.02562 * 7 6 5 9 9 N 1.35045 * 108.70143 * 359.76358 * 8 7 6 10 10 H 0.97006 * 126.39731 * 180.26564 * 9 8 7 11 11 C 1.50708 * 109.46809 * 240.00168 * 2 1 3 12 12 O 1.21276 * 120.00004 * 240.00163 * 11 2 1 13 13 N 1.34773 * 119.99865 * 60.00268 * 11 2 1 14 14 C 1.46494 * 120.00181 * 180.02562 * 13 11 2 15 15 C 1.53000 * 109.47496 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.55516 * 60.12496 * 15 14 13 17 17 C 1.53292 * 109.51189 * 180.25345 * 15 14 13 18 18 N 1.47233 * 108.40299 * 172.22959 * 17 15 14 19 19 C 1.36938 * 121.03150 * 129.45891 * 18 17 15 20 20 H 1.07995 * 120.00241 * 206.17702 * 19 18 17 21 21 C 1.38816 * 119.99718 * 26.17954 * 19 18 17 22 22 N 1.31615 * 120.00526 * 16.89599 * 21 19 18 23 23 Si 1.86806 * 119.99896 * 196.89669 * 21 19 18 24 24 H 1.48504 * 109.46919 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47372 * 119.99555 * 23 21 19 26 26 H 1.48500 * 109.47051 * 240.00016 * 23 21 19 27 27 C 1.47151 * 117.98790 * 309.48233 * 18 17 15 28 28 C 1.53300 * 108.41429 * 50.51917 * 27 18 17 29 29 O 1.42962 * 109.22183 * 307.68047 * 28 27 18 30 30 H 1.09000 * 109.47489 * 59.99496 * 1 2 3 31 31 H 1.09005 * 109.47402 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46913 * 299.99574 * 1 2 3 33 33 H 1.09002 * 109.47168 * 54.99657 * 4 2 1 34 34 H 1.08999 * 109.47699 * 174.99520 * 4 2 1 35 35 H 1.07999 * 125.99178 * 359.96656 * 6 5 4 36 36 H 1.07999 * 125.65206 * 180.02562 * 8 7 6 37 37 H 0.97006 * 120.00217 * 359.97438 * 13 11 2 38 38 H 1.09004 * 109.47543 * 59.99407 * 14 13 11 39 39 H 1.09002 * 109.46900 * 300.00200 * 14 13 11 40 40 H 1.09005 * 109.47000 * 299.87605 * 16 15 14 41 41 H 1.09000 * 109.46959 * 59.86855 * 16 15 14 42 42 H 1.09000 * 109.47652 * 179.87596 * 16 15 14 43 43 H 1.09001 * 109.68446 * 291.94465 * 17 15 14 44 44 H 1.08991 * 109.68807 * 52.50281 * 17 15 14 45 45 H 0.97002 * 120.00383 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.67883 * 290.77953 * 27 18 17 47 47 H 1.08994 * 109.68171 * 170.26092 * 27 18 17 48 48 H 1.09004 * 109.51066 * 67.60375 * 28 27 18 49 49 H 1.09001 * 109.51236 * 187.70563 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 6 0.4667 -0.0215 3.1303 7 7 0.5108 0.8295 4.1662 8 6 1.6680 1.4325 4.1788 9 7 2.4056 0.9757 3.1440 10 1 3.3080 1.2487 2.9155 11 6 2.0323 -0.7104 -1.2306 12 8 2.7294 -1.6965 -1.1194 13 7 1.7066 -0.2499 -2.4546 14 6 2.1944 -0.9407 -3.6508 15 6 1.6840 -0.2197 -4.9000 16 6 2.1956 1.2222 -4.9040 17 6 2.1887 -0.9456 -6.1523 18 7 1.5357 -0.3498 -7.3298 19 6 2.2686 0.0606 -8.4113 20 1 1.8914 0.8421 -9.0540 21 6 3.4964 -0.5281 -8.6814 22 7 3.8110 -1.6790 -8.1257 23 14 4.7022 0.3131 -9.8337 24 1 4.1133 1.5853 -10.3236 25 1 5.9647 0.5993 -9.1062 26 1 4.9868 -0.5768 -10.9880 27 6 0.0712 -0.2081 -7.3094 28 6 -0.3304 0.4819 -6.0006 29 8 0.2543 -0.2191 -4.9004 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6054 -1.7199 1.2950 34 1 3.1263 -0.7997 1.2055 35 1 -0.3651 -0.6578 2.8667 36 1 1.9851 2.1711 4.9001 37 1 1.1487 0.5387 -2.5436 38 1 1.8307 -1.9683 -3.6507 39 1 3.2844 -0.9412 -3.6510 40 1 1.8327 1.7390 -4.0156 41 1 3.2856 1.2209 -4.9037 42 1 1.8331 1.7340 -5.7955 43 1 3.2693 -0.8289 -6.2339 44 1 1.9370 -2.0042 -6.0896 45 1 4.6691 -2.0902 -8.3141 46 1 -0.3937 -1.1926 -7.3630 47 1 -0.2510 0.3967 -8.1570 48 1 0.0268 1.5117 -6.0075 49 1 -1.4160 0.4737 -5.9029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108270366.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:11 Heat of formation + Delta-G solvation = -28.873146 kcal Electronic energy + Delta-G solvation = -29764.269393 eV Core-core repulsion = 25726.970809 eV Total energy + Delta-G solvation = -4037.298584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.96078 -41.21830 -40.29816 -36.59174 -36.06072 -35.86598 -33.43722 -33.23447 -33.07273 -30.71426 -29.56859 -28.06583 -27.53174 -27.31418 -25.00505 -24.30259 -22.82738 -22.32466 -21.70826 -21.02030 -20.23343 -18.94563 -18.78140 -18.06889 -17.45154 -16.92832 -16.88263 -16.35531 -16.10661 -15.85215 -15.61828 -15.36949 -15.36094 -15.18505 -14.79997 -14.61940 -14.49208 -14.35440 -13.99570 -13.66824 -13.50529 -13.37462 -13.17725 -13.05133 -12.92341 -12.81324 -12.53578 -12.43115 -12.23044 -12.12128 -12.09526 -11.94939 -11.83607 -11.15046 -10.96644 -10.90123 -10.82007 -10.68372 -10.50020 -10.08336 -9.26897 -8.72110 -7.90144 -5.36716 1.12533 1.44470 1.47032 1.56841 1.64625 2.10555 2.26639 2.37867 2.48449 2.80072 3.24561 3.50249 3.60555 3.84531 3.91248 3.92652 4.01459 4.03204 4.11684 4.25352 4.39139 4.42522 4.44347 4.47262 4.58877 4.65583 4.67019 4.71961 4.78192 4.79840 4.86369 4.94536 4.97475 5.05522 5.12283 5.13247 5.21387 5.30468 5.36420 5.39154 5.41481 5.53880 5.61646 5.82236 6.29099 6.37667 6.57059 6.60502 7.06650 7.17761 7.25534 7.75984 8.29955 9.15609 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022598 B = 0.002293 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.769117 B =12208.758363 C =12720.009601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.115 0.885 4 C -0.019 4.019 5 C -0.016 4.016 6 C -0.040 4.040 7 N -0.538 5.538 8 C 0.189 3.811 9 N -0.558 5.558 10 H 0.433 0.567 11 C 0.513 3.487 12 O -0.586 6.586 13 N -0.704 5.704 14 C 0.149 3.851 15 C 0.095 3.905 16 C -0.153 4.153 17 C 0.166 3.834 18 N -0.607 5.607 19 C -0.257 4.257 20 H 0.074 0.926 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.966 3.034 24 H -0.263 1.263 25 H -0.290 1.290 26 H -0.296 1.296 27 C 0.101 3.899 28 C 0.053 3.947 29 O -0.384 6.384 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.171 0.829 36 H 0.242 0.758 37 H 0.414 0.586 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.067 0.933 44 H -0.009 1.009 45 H 0.250 0.750 46 H 0.011 0.989 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 10.332 20.538 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.133 0.867 4 C -0.059 4.059 5 C -0.133 4.133 6 C -0.187 4.187 7 N -0.258 5.258 8 C -0.096 4.096 9 N -0.163 5.163 10 H 0.274 0.726 11 C 0.301 3.699 12 O -0.466 6.466 13 N -0.356 5.356 14 C 0.024 3.976 15 C 0.053 3.947 16 C -0.210 4.210 17 C 0.039 3.961 18 N -0.331 5.331 19 C -0.386 4.386 20 H 0.091 0.909 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.794 3.206 24 H -0.187 1.187 25 H -0.217 1.217 26 H -0.223 1.223 27 C -0.024 4.024 28 C -0.024 4.024 29 O -0.303 6.303 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.188 0.812 36 H 0.258 0.742 37 H 0.251 0.749 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.009 0.991 45 H 0.059 0.941 46 H 0.029 0.971 47 H 0.090 0.910 48 H 0.079 0.921 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.180 9.591 21.258 23.890 hybrid contribution 1.822 -0.001 -2.048 2.741 sum -3.358 9.590 19.210 21.732 Atomic orbital electron populations 1.21850 0.91361 1.03047 1.03789 1.21206 0.98854 1.00839 0.90258 0.86745 1.19721 1.01701 0.97367 0.87061 1.21108 0.93984 0.98830 0.99331 1.22295 0.98371 1.02950 0.95117 1.70275 1.21478 1.11558 1.22479 1.25661 0.87925 1.02266 0.93700 1.43321 1.17030 1.32297 1.23641 0.72617 1.21191 0.79271 0.84125 0.85356 1.90698 1.40155 1.28331 1.87413 1.45822 1.53068 1.32130 1.04579 1.21004 0.98347 0.95613 0.82621 1.22172 0.81872 0.96327 0.94288 1.22107 1.01214 0.95177 1.02502 1.21085 0.97961 0.92409 0.84606 1.44279 1.01283 1.72599 1.14968 1.19537 1.00799 1.13375 1.04938 0.90861 1.25787 1.01856 0.95988 1.00987 1.70187 1.22650 1.16751 1.48688 0.85232 0.78993 0.78315 0.78076 1.18737 1.21679 1.22317 1.21825 0.84552 0.97917 0.98144 1.23098 0.98610 0.95163 0.85537 1.87824 1.18709 1.76727 1.47043 0.91193 0.92377 0.90105 0.89579 0.90587 0.81199 0.74212 0.74882 0.92941 0.91065 0.90309 0.92670 0.92070 0.91509 0.99070 0.94088 0.97066 0.91039 0.92082 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.77 71.98 0.63 -1.45 16 2 C -0.09 -1.48 2.71 -11.54 -0.03 -1.51 16 3 H 0.11 1.44 8.14 -2.39 -0.02 1.43 16 4 C -0.02 -0.32 4.60 29.85 0.14 -0.19 16 5 C -0.02 -0.25 6.09 40.95 0.25 0.00 16 6 C -0.04 -0.75 10.10 83.52 0.84 0.10 16 7 N -0.54 -10.79 11.25 -200.32 -2.25 -13.05 16 8 C 0.19 2.35 13.04 180.26 2.35 4.70 16 9 N -0.56 -6.07 6.15 -186.50 -1.15 -7.22 16 10 H 0.43 2.12 8.96 -92.70 -0.83 1.29 16 11 C 0.51 12.94 7.15 87.66 0.63 13.57 16 12 O -0.59 -19.85 15.92 -3.02 -0.05 -19.90 16 13 N -0.70 -17.73 5.05 -463.07 -2.34 -20.06 16 14 C 0.15 4.95 4.82 86.38 0.42 5.36 16 15 C 0.09 3.34 0.76 -10.70 -0.01 3.33 16 16 C -0.15 -4.72 7.92 71.98 0.57 -4.15 16 17 C 0.17 7.85 4.12 86.34 0.36 8.20 16 18 N -0.61 -29.30 2.57 -697.35 -1.79 -31.09 16 19 C -0.26 -13.51 9.65 84.03 0.81 -12.70 16 20 H 0.07 3.72 7.88 -2.91 -0.02 3.69 16 21 C -0.05 -2.76 4.95 84.86 0.42 -2.34 16 22 N -0.94 -54.72 11.14 21.65 0.24 -54.48 16 23 Si 0.97 43.66 29.59 68.60 2.03 45.69 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 27 C 0.10 3.97 6.73 86.36 0.58 4.55 16 28 C 0.05 1.63 6.60 72.08 0.48 2.10 16 29 O -0.38 -12.85 9.97 -148.98 -1.49 -14.34 16 30 H 0.07 0.94 7.56 -2.39 -0.02 0.92 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 1.09 6.18 -2.38 -0.01 1.08 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.34 7.96 -2.39 -0.02 1.32 16 35 H 0.17 2.84 8.02 -2.91 -0.02 2.82 16 36 H 0.24 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.41 8.45 6.62 -92.70 -0.61 7.84 16 38 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.08 1.85 6.88 -2.38 -0.02 1.83 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 2.08 6.11 -2.39 -0.01 2.06 16 43 H 0.07 3.54 6.14 -2.39 -0.01 3.52 16 44 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.07 2.63 7.96 -2.39 -0.02 2.61 16 48 H 0.06 1.75 6.25 -2.39 -0.01 1.74 16 49 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -73.88 387.14 1.17 -72.72 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -0.47 Total: 22.16 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 8.43 Total: 19.57 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -7.29 Total: -125.90 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -1.53 Total: -34.24 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -73.88 1.17 -72.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108270366.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.844 kcal (2) G-P(sol) polarization free energy of solvation -73.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds