Wall clock time and date at job start Tue Mar 31 2020 19:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47132 * 2 1 4 4 C 1.50700 * 109.47204 * 120.00349 * 2 1 3 5 5 O 1.21275 * 120.00339 * 119.99879 * 4 2 1 6 6 N 1.34785 * 119.99484 * 299.99764 * 4 2 1 7 7 C 1.46499 * 119.99349 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.46950 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.50927 * 304.89659 * 8 7 6 10 10 C 1.53288 * 109.55566 * 184.77158 * 8 7 6 11 11 N 1.47148 * 108.38852 * 187.74536 * 10 8 7 12 12 C 1.36938 * 120.98705 * 230.55902 * 11 10 8 13 13 H 1.08001 * 119.99863 * 153.29877 * 12 11 10 14 14 C 1.38813 * 119.99808 * 333.30057 * 12 11 10 15 15 N 1.31618 * 119.99580 * 343.54885 * 14 12 11 16 16 Si 1.86796 * 119.99837 * 163.55016 * 14 12 11 17 17 H 1.48500 * 109.47585 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46899 * 120.00079 * 16 14 12 19 19 H 1.48505 * 109.47044 * 239.99720 * 16 14 12 20 20 C 1.47159 * 118.03554 * 50.53264 * 11 10 8 21 21 C 1.53301 * 108.38149 * 309.47195 * 20 11 10 22 22 O 1.42952 * 109.22472 * 52.29798 * 21 20 11 23 23 C 1.50697 * 109.46591 * 240.00053 * 2 1 3 24 24 C 1.39866 * 126.04252 * 299.68959 * 23 2 1 25 25 N 1.30838 * 108.20516 * 179.82485 * 24 23 2 26 26 N 1.40087 * 108.20406 * 0.43404 * 25 24 23 27 27 C 1.46496 * 126.03879 * 179.73823 * 26 25 24 28 28 C 1.34945 * 107.92187 * 359.72538 * 26 25 24 29 29 H 1.09003 * 109.47550 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46635 * 300.00194 * 1 2 3 31 31 H 1.08998 * 109.47343 * 59.99644 * 1 2 3 32 32 H 0.96994 * 119.99992 * 359.97438 * 6 4 2 33 33 H 1.08995 * 109.47594 * 59.99992 * 7 6 4 34 34 H 1.09003 * 109.47312 * 299.99328 * 7 6 4 35 35 H 1.08995 * 109.47084 * 180.10167 * 9 8 7 36 36 H 1.09004 * 109.47359 * 300.10180 * 9 8 7 37 37 H 1.08997 * 109.47160 * 60.10079 * 9 8 7 38 38 H 1.09001 * 109.68566 * 307.47086 * 10 8 7 39 39 H 1.09003 * 109.68257 * 67.98344 * 10 8 7 40 40 H 0.97005 * 119.99361 * 179.97438 * 15 14 12 41 41 H 1.08993 * 109.68793 * 189.74305 * 20 11 10 42 42 H 1.09006 * 109.67927 * 69.18579 * 20 11 10 43 43 H 1.08999 * 109.50973 * 172.22266 * 21 20 11 44 44 H 1.09001 * 109.50729 * 292.32081 * 21 20 11 45 45 H 1.08007 * 125.89935 * 0.02562 * 24 23 2 46 46 H 1.09003 * 109.47496 * 269.98362 * 27 26 25 47 47 H 1.09006 * 109.47005 * 29.98025 * 27 26 25 48 48 H 1.08998 * 109.47206 * 149.97584 * 27 26 25 49 49 H 1.08004 * 126.12581 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2499 2.4546 7 6 2.1956 -0.9403 3.6507 8 6 1.6850 -0.2195 4.9000 9 6 2.0904 1.2546 4.8410 10 6 2.2911 -0.8676 6.1500 11 7 1.6446 -0.2831 7.3356 12 6 2.3894 0.2128 8.3722 13 1 1.9863 0.9916 9.0026 14 6 3.6625 -0.2855 8.6127 15 7 4.0336 -1.4291 8.0771 16 14 4.8489 0.6669 9.6965 17 1 4.1943 1.9121 10.1721 18 1 5.2327 -0.1679 10.8631 19 1 6.0633 1.0139 8.9153 20 6 0.1740 -0.2468 7.3743 21 6 -0.3289 0.3710 6.0646 22 8 0.2603 -0.3208 4.9611 23 6 2.0322 -0.7104 -1.2305 24 6 1.7783 -2.0425 -1.5729 25 7 2.3774 -2.2940 -2.7085 26 7 3.0408 -1.1309 -3.1203 27 6 3.8398 -0.9800 -4.3389 28 6 2.8134 -0.1740 -2.1964 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.1494 0.5389 2.5435 33 1 3.2855 -0.9399 3.6505 34 1 1.8325 -1.9681 3.6509 35 1 1.7279 1.7671 5.7321 36 1 3.1768 1.3311 4.7944 37 1 1.6554 1.7159 3.9544 38 1 2.1146 -1.9430 6.1283 39 1 3.3629 -0.6721 6.1818 40 1 4.9234 -1.7771 8.2448 41 1 -0.1563 0.3602 8.2172 42 1 -0.2157 -1.2598 7.4758 43 1 -1.4140 0.2815 6.0130 44 1 -0.0482 1.4236 6.0272 45 1 1.1869 -2.7419 -1.0005 46 1 4.8773 -1.2390 -4.1275 47 1 3.4506 -1.6416 -5.1129 48 1 3.7860 0.0529 -4.6831 49 1 3.1881 0.8386 -2.2230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108449954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:40 Heat of formation + Delta-G solvation = 25.477187 kcal Electronic energy + Delta-G solvation = -29902.938561 eV Core-core repulsion = 25867.996784 eV Total energy + Delta-G solvation = -4034.941777 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.38722 -39.68755 -38.70936 -34.92101 -34.48141 -34.30580 -32.78792 -31.50096 -31.23950 -29.53762 -27.94460 -26.71366 -26.50379 -25.69177 -23.98164 -23.22008 -21.49498 -21.19961 -20.68708 -19.65666 -18.65846 -17.40032 -16.91199 -16.57711 -15.85824 -15.54196 -15.46978 -15.24266 -14.77707 -14.47471 -14.31565 -14.10077 -13.92701 -13.76492 -13.48952 -13.13193 -13.04651 -13.02855 -12.77294 -12.66859 -12.57390 -12.18861 -11.93247 -11.78303 -11.58398 -11.55020 -11.18895 -11.01595 -10.82792 -10.66062 -10.58686 -10.30401 -10.23604 -9.98553 -9.63291 -9.51816 -9.40846 -9.02456 -8.72574 -8.54617 -8.46990 -6.73644 -5.84943 -3.28849 1.78611 2.40983 2.71471 2.90079 3.32500 3.40686 3.42520 3.54317 4.26578 4.32204 4.43220 4.64312 4.75616 4.85844 4.89699 5.05520 5.11062 5.15914 5.19061 5.31720 5.34738 5.50272 5.52854 5.59279 5.60867 5.68597 5.79077 5.91367 5.93425 5.94847 6.05695 6.11604 6.12604 6.16067 6.33509 6.47570 6.58088 6.60901 6.72873 6.79097 6.82970 6.87518 7.07739 7.47685 7.62838 7.70662 7.79079 7.89906 8.32848 8.50404 9.10512 9.73516 10.30942 11.22936 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019246 B = 0.002496 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.488660 B =11213.924629 C =12012.907448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.030 4.030 3 H 0.098 0.902 4 C 0.512 3.488 5 O -0.536 6.536 6 N -0.719 5.719 7 C 0.140 3.860 8 C 0.079 3.921 9 C -0.161 4.161 10 C 0.160 3.840 11 N -0.591 5.591 12 C -0.254 4.254 13 H 0.068 0.932 14 C 0.003 3.997 15 N -0.901 5.901 16 Si 0.902 3.098 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.288 1.288 20 C 0.109 3.891 21 C 0.046 3.954 22 O -0.383 6.383 23 C -0.213 4.213 24 C 0.083 3.917 25 N -0.303 5.303 26 N -0.381 5.381 27 C 0.104 3.896 28 C 0.057 3.943 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.400 0.600 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.029 0.971 39 H 0.096 0.904 40 H 0.255 0.745 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.179 0.821 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 7.185 -20.758 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.052 4.052 3 H 0.116 0.884 4 C 0.297 3.703 5 O -0.412 6.412 6 N -0.371 5.371 7 C 0.016 3.984 8 C 0.038 3.962 9 C -0.219 4.219 10 C 0.033 3.967 11 N -0.314 5.314 12 C -0.383 4.383 13 H 0.086 0.914 14 C -0.196 4.196 15 N -0.545 5.545 16 Si 0.732 3.268 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.215 1.215 20 C -0.018 4.018 21 C -0.032 4.032 22 O -0.303 6.303 23 C -0.225 4.225 24 C -0.103 4.103 25 N -0.124 5.124 26 N -0.163 5.163 27 C -0.037 4.037 28 C -0.089 4.089 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.235 0.765 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.196 0.804 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.803 5.417 -21.959 23.122 hybrid contribution 0.509 1.552 1.580 2.272 sum -4.294 6.969 -20.379 21.962 Atomic orbital electron populations 1.21756 0.92419 1.03006 1.02408 1.19511 0.96998 0.99147 0.89584 0.88421 1.20546 0.80461 0.84901 0.84411 1.90707 1.37634 1.26174 1.86700 1.46033 1.53463 1.32161 1.05453 1.21303 0.98921 0.96432 0.81701 1.22536 0.81943 0.95374 0.96373 1.22199 1.01866 0.96502 1.01312 1.21286 0.98736 0.94561 0.82127 1.44003 0.99037 1.71366 1.17036 1.19192 0.97255 1.13900 1.07933 0.91411 1.25056 0.99680 0.95669 0.99162 1.70025 1.19529 1.17418 1.47520 0.86227 0.81195 0.79434 0.79940 1.20260 1.21648 1.21490 1.21603 0.86643 0.98226 0.95285 1.23024 0.96410 0.95655 0.88089 1.87823 1.19813 1.74802 1.47825 1.19456 1.08578 0.95480 0.98990 1.23625 0.98132 0.95596 0.92984 1.77366 1.13787 1.05635 1.15638 1.48365 1.40442 1.08429 1.19110 1.21800 0.94686 1.03270 0.83977 1.22213 0.99840 0.95718 0.91090 0.91920 0.91764 0.91647 0.76472 0.90223 0.90962 0.90845 0.91935 0.93958 0.95273 0.88629 0.93483 0.92093 0.95672 0.90231 0.93433 0.80430 0.90896 0.89459 0.89680 0.81140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.98 37.16 0.33 -0.85 16 2 C -0.03 -0.31 3.09 -92.92 -0.29 -0.59 16 3 H 0.10 0.79 8.11 -51.93 -0.42 0.37 16 4 C 0.51 7.29 7.11 -10.98 -0.08 7.21 16 5 O -0.54 -9.89 15.36 5.56 0.09 -9.81 16 6 N -0.72 -9.97 5.09 -60.29 -0.31 -10.27 16 7 C 0.14 2.39 4.85 -4.04 -0.02 2.37 16 8 C 0.08 1.44 0.78 -90.47 -0.07 1.37 16 9 C -0.16 -2.67 7.86 37.16 0.29 -2.38 16 10 C 0.16 3.69 4.11 -3.54 -0.01 3.68 16 11 N -0.59 -14.25 2.56 -171.82 -0.44 -14.69 16 12 C -0.25 -6.69 9.65 -15.06 -0.15 -6.83 16 13 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 14 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 15 N -0.90 -25.63 11.14 55.49 0.62 -25.01 16 16 Si 0.90 21.18 29.58 -169.99 -5.03 16.15 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 C 0.11 2.21 6.74 -3.53 -0.02 2.18 16 21 C 0.05 0.78 6.60 37.31 0.25 1.03 16 22 O -0.38 -6.90 10.17 -35.23 -0.36 -7.26 16 23 C -0.21 -2.50 4.37 -105.06 -0.46 -2.96 16 24 C 0.08 1.11 10.76 -17.37 -0.19 0.92 16 25 N -0.30 -4.18 12.58 30.63 0.39 -3.79 16 26 N -0.38 -4.11 4.01 -68.16 -0.27 -4.39 16 27 C 0.10 0.63 11.47 59.84 0.69 1.32 16 28 C 0.06 0.57 11.38 -17.22 -0.20 0.38 16 29 H 0.06 0.59 8.03 -51.93 -0.42 0.18 16 30 H 0.06 0.50 7.57 -51.92 -0.39 0.11 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 4.75 6.41 -40.82 -0.26 4.49 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.34 6.11 -51.93 -0.32 1.02 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.04 0.57 6.59 -51.93 -0.34 0.23 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 2.45 6.16 -51.93 -0.32 2.13 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.77 6.26 -51.93 -0.32 0.45 16 45 H 0.18 2.24 8.06 -52.48 -0.42 1.81 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -34.05 391.42 -7.26 -41.32 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.83 Total: 5.02 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -0.01 Total: 6.84 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.02 Total: -58.16 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.27 Total: -17.07 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.05 -7.26 -41.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108449954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.793 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds