Wall clock time and date at job start Tue Mar 31 2020 19:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47132 * 2 1 4 4 C 1.50700 * 109.47204 * 120.00349 * 2 1 3 5 5 O 1.21275 * 120.00339 * 119.99879 * 4 2 1 6 6 N 1.34785 * 119.99484 * 299.99764 * 4 2 1 7 7 C 1.46499 * 119.99349 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.46950 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.50927 * 304.89659 * 8 7 6 10 10 C 1.53288 * 109.55566 * 184.77158 * 8 7 6 11 11 N 1.47148 * 108.38852 * 187.74536 * 10 8 7 12 12 C 1.36938 * 120.98705 * 230.55902 * 11 10 8 13 13 H 1.08001 * 119.99863 * 153.29877 * 12 11 10 14 14 C 1.38813 * 119.99808 * 333.30057 * 12 11 10 15 15 N 1.31618 * 119.99580 * 343.54885 * 14 12 11 16 16 Si 1.86796 * 119.99837 * 163.55016 * 14 12 11 17 17 H 1.48500 * 109.47585 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46899 * 120.00079 * 16 14 12 19 19 H 1.48505 * 109.47044 * 239.99720 * 16 14 12 20 20 C 1.47159 * 118.03554 * 50.53264 * 11 10 8 21 21 C 1.53301 * 108.38149 * 309.47195 * 20 11 10 22 22 O 1.42952 * 109.22472 * 52.29798 * 21 20 11 23 23 C 1.50697 * 109.46591 * 240.00053 * 2 1 3 24 24 C 1.39866 * 126.04252 * 299.68959 * 23 2 1 25 25 N 1.30838 * 108.20516 * 179.82485 * 24 23 2 26 26 N 1.40087 * 108.20406 * 0.43404 * 25 24 23 27 27 C 1.46496 * 126.03879 * 179.73823 * 26 25 24 28 28 C 1.34945 * 107.92187 * 359.72538 * 26 25 24 29 29 H 1.09003 * 109.47550 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46635 * 300.00194 * 1 2 3 31 31 H 1.08998 * 109.47343 * 59.99644 * 1 2 3 32 32 H 0.96994 * 119.99992 * 359.97438 * 6 4 2 33 33 H 1.08995 * 109.47594 * 59.99992 * 7 6 4 34 34 H 1.09003 * 109.47312 * 299.99328 * 7 6 4 35 35 H 1.08995 * 109.47084 * 180.10167 * 9 8 7 36 36 H 1.09004 * 109.47359 * 300.10180 * 9 8 7 37 37 H 1.08997 * 109.47160 * 60.10079 * 9 8 7 38 38 H 1.09001 * 109.68566 * 307.47086 * 10 8 7 39 39 H 1.09003 * 109.68257 * 67.98344 * 10 8 7 40 40 H 0.97005 * 119.99361 * 179.97438 * 15 14 12 41 41 H 1.08993 * 109.68793 * 189.74305 * 20 11 10 42 42 H 1.09006 * 109.67927 * 69.18579 * 20 11 10 43 43 H 1.08999 * 109.50973 * 172.22266 * 21 20 11 44 44 H 1.09001 * 109.50729 * 292.32081 * 21 20 11 45 45 H 1.08007 * 125.89935 * 0.02562 * 24 23 2 46 46 H 1.09003 * 109.47496 * 269.98362 * 27 26 25 47 47 H 1.09006 * 109.47005 * 29.98025 * 27 26 25 48 48 H 1.08998 * 109.47206 * 149.97584 * 27 26 25 49 49 H 1.08004 * 126.12581 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2499 2.4546 7 6 2.1956 -0.9403 3.6507 8 6 1.6850 -0.2195 4.9000 9 6 2.0904 1.2546 4.8410 10 6 2.2911 -0.8676 6.1500 11 7 1.6446 -0.2831 7.3356 12 6 2.3894 0.2128 8.3722 13 1 1.9863 0.9916 9.0026 14 6 3.6625 -0.2855 8.6127 15 7 4.0336 -1.4291 8.0771 16 14 4.8489 0.6669 9.6965 17 1 4.1943 1.9121 10.1721 18 1 5.2327 -0.1679 10.8631 19 1 6.0633 1.0139 8.9153 20 6 0.1740 -0.2468 7.3743 21 6 -0.3289 0.3710 6.0646 22 8 0.2603 -0.3208 4.9611 23 6 2.0322 -0.7104 -1.2305 24 6 1.7783 -2.0425 -1.5729 25 7 2.3774 -2.2940 -2.7085 26 7 3.0408 -1.1309 -3.1203 27 6 3.8398 -0.9800 -4.3389 28 6 2.8134 -0.1740 -2.1964 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.1494 0.5389 2.5435 33 1 3.2855 -0.9399 3.6505 34 1 1.8325 -1.9681 3.6509 35 1 1.7279 1.7671 5.7321 36 1 3.1768 1.3311 4.7944 37 1 1.6554 1.7159 3.9544 38 1 2.1146 -1.9430 6.1283 39 1 3.3629 -0.6721 6.1818 40 1 4.9234 -1.7771 8.2448 41 1 -0.1563 0.3602 8.2172 42 1 -0.2157 -1.2598 7.4758 43 1 -1.4140 0.2815 6.0130 44 1 -0.0482 1.4236 6.0272 45 1 1.1869 -2.7419 -1.0005 46 1 4.8773 -1.2390 -4.1275 47 1 3.4506 -1.6416 -5.1129 48 1 3.7860 0.0529 -4.6831 49 1 3.1881 0.8386 -2.2230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108449954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:39 Heat of formation + Delta-G solvation = 1.489435 kcal Electronic energy + Delta-G solvation = -29903.978748 eV Core-core repulsion = 25867.996784 eV Total energy + Delta-G solvation = -4035.981964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.22222 -41.01881 -40.07574 -36.51029 -35.87175 -35.34923 -33.63699 -33.20483 -32.77808 -30.32221 -29.53720 -28.06217 -27.41399 -27.21036 -25.05258 -24.85200 -22.96262 -22.10860 -21.74283 -20.71567 -20.16919 -18.93115 -18.22918 -17.57688 -17.28592 -16.85205 -16.68498 -16.28156 -16.14954 -15.86319 -15.58674 -15.37678 -15.23390 -15.01907 -14.84966 -14.62252 -14.29785 -14.04995 -13.75617 -13.55466 -13.40025 -13.34533 -13.17939 -13.03273 -12.89423 -12.80154 -12.54209 -12.43897 -12.41129 -12.40064 -12.10100 -11.91244 -11.82028 -11.42374 -11.10022 -10.79799 -10.64561 -10.47772 -10.28994 -10.00250 -9.28446 -8.69848 -7.88560 -5.35966 1.00217 1.45512 1.47786 1.57902 1.74184 1.78932 1.79233 2.39404 2.50795 2.83638 3.26485 3.53345 3.64301 3.83960 3.97790 4.05877 4.06887 4.14697 4.26993 4.31878 4.42204 4.46169 4.46397 4.49500 4.53205 4.61765 4.69765 4.71477 4.75633 4.83674 4.89129 4.90881 5.00998 5.07303 5.08645 5.16240 5.22703 5.24295 5.39972 5.41673 5.49831 5.56174 5.63083 5.69872 6.21749 6.31097 6.41446 6.70163 6.77552 7.08120 7.40142 7.77604 8.31774 9.17042 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019246 B = 0.002496 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.488660 B =11213.924629 C =12012.907448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.017 4.017 3 H 0.134 0.866 4 C 0.510 3.490 5 O -0.584 6.584 6 N -0.706 5.706 7 C 0.151 3.849 8 C 0.095 3.905 9 C -0.152 4.152 10 C 0.167 3.833 11 N -0.607 5.607 12 C -0.256 4.256 13 H 0.075 0.925 14 C -0.052 4.052 15 N -0.938 5.938 16 Si 0.966 3.034 17 H -0.262 1.262 18 H -0.296 1.296 19 H -0.291 1.291 20 C 0.101 3.899 21 C 0.053 3.947 22 O -0.384 6.384 23 C -0.236 4.236 24 C 0.062 3.938 25 N -0.344 5.344 26 N -0.383 5.383 27 C 0.094 3.906 28 C 0.069 3.931 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.414 0.586 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.082 0.918 38 H -0.011 1.011 39 H 0.065 0.935 40 H 0.249 0.751 41 H 0.072 0.928 42 H 0.010 0.990 43 H 0.117 0.883 44 H 0.063 0.937 45 H 0.168 0.832 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.121 0.879 49 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.718 10.991 -22.321 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.039 4.039 3 H 0.151 0.849 4 C 0.297 3.703 5 O -0.463 6.463 6 N -0.359 5.359 7 C 0.026 3.974 8 C 0.054 3.946 9 C -0.210 4.210 10 C 0.040 3.960 11 N -0.331 5.331 12 C -0.386 4.386 13 H 0.092 0.908 14 C -0.247 4.247 15 N -0.584 5.584 16 Si 0.795 3.205 17 H -0.186 1.186 18 H -0.224 1.224 19 H -0.217 1.217 20 C -0.025 4.025 21 C -0.024 4.024 22 O -0.303 6.303 23 C -0.248 4.248 24 C -0.124 4.124 25 N -0.167 5.167 26 N -0.165 5.165 27 C -0.046 4.046 28 C -0.078 4.078 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.252 0.748 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.007 0.993 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.028 0.972 43 H 0.135 0.865 44 H 0.081 0.919 45 H 0.185 0.815 46 H 0.097 0.903 47 H 0.106 0.894 48 H 0.140 0.860 49 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.870 9.260 -23.538 25.966 hybrid contribution 0.792 0.309 2.052 2.221 sum -5.078 9.569 -21.486 24.063 Atomic orbital electron populations 1.21756 0.90969 1.02464 1.03971 1.19532 0.97970 0.99901 0.86484 0.84871 1.21382 0.79303 0.84271 0.85304 1.90696 1.39852 1.28451 1.87329 1.45843 1.53404 1.32243 1.04382 1.20920 0.98030 0.95570 0.82903 1.22153 0.82016 0.96312 0.94084 1.22105 1.01589 0.94650 1.02624 1.21057 0.97528 0.92782 0.84651 1.44260 1.00739 1.71141 1.16952 1.19548 0.97534 1.13491 1.08015 0.90771 1.25819 1.01407 0.96489 1.00998 1.70200 1.19490 1.19189 1.49501 0.85219 0.78944 0.78508 0.77867 1.18579 1.22352 1.21747 1.21839 0.84380 0.98042 0.98207 1.23100 0.98219 0.95770 0.85330 1.87836 1.19103 1.75293 1.48097 1.19694 1.09879 0.95000 1.00227 1.23671 0.98666 0.96739 0.93284 1.77271 1.15257 1.07814 1.16329 1.48765 1.39861 1.07674 1.20208 1.22175 0.94255 1.05667 0.82480 1.22883 0.98071 0.97039 0.89823 0.93611 0.90495 0.89684 0.74785 0.91631 0.93259 0.92005 0.92748 0.89919 0.99326 0.91657 0.94162 0.90963 0.97199 0.86469 0.91896 0.81535 0.90347 0.89361 0.86040 0.76847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.98 71.98 0.65 -1.28 16 2 C -0.02 -0.30 3.09 -12.29 -0.04 -0.34 16 3 H 0.13 1.49 8.11 -2.39 -0.02 1.47 16 4 C 0.51 14.04 7.11 87.66 0.62 14.66 16 5 O -0.58 -22.08 15.36 -3.01 -0.05 -22.13 16 6 N -0.71 -18.51 5.09 -463.05 -2.36 -20.86 16 7 C 0.15 5.24 4.85 86.38 0.42 5.66 16 8 C 0.10 3.46 0.78 -10.70 -0.01 3.45 16 9 C -0.15 -4.73 7.86 71.98 0.57 -4.17 16 10 C 0.17 8.04 4.11 86.35 0.35 8.39 16 11 N -0.61 -29.64 2.56 -697.53 -1.79 -31.43 16 12 C -0.26 -13.59 9.65 84.03 0.81 -12.78 16 13 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 14 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 15 N -0.94 -55.62 11.14 21.65 0.24 -55.37 16 16 Si 0.97 44.10 29.58 68.60 2.03 46.13 16 17 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 C 0.10 4.00 6.74 86.35 0.58 4.59 16 21 C 0.05 1.64 6.60 72.08 0.48 2.11 16 22 O -0.38 -13.14 10.17 -148.98 -1.52 -14.65 16 23 C -0.24 -5.16 4.37 -20.15 -0.09 -5.25 16 24 C 0.06 1.69 10.76 85.24 0.92 2.60 16 25 N -0.34 -9.60 12.58 -57.02 -0.72 -10.32 16 26 N -0.38 -7.62 4.01 -369.56 -1.48 -9.10 16 27 C 0.09 0.93 11.47 127.77 1.47 2.39 16 28 C 0.07 1.17 11.38 83.54 0.95 2.12 16 29 H 0.04 0.82 8.03 -2.39 -0.02 0.80 16 30 H 0.08 0.91 7.57 -2.38 -0.02 0.89 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.41 8.41 6.41 -92.71 -0.59 7.82 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 2.10 6.11 -2.39 -0.01 2.08 16 36 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.08 1.89 6.59 -2.39 -0.02 1.88 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.07 3.53 6.16 -2.39 -0.01 3.52 16 40 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 41 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 42 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 43 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.06 1.80 6.26 -2.39 -0.01 1.79 16 45 H 0.17 4.59 8.06 -2.91 -0.02 4.57 16 46 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 48 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -79.08 391.42 2.82 -76.26 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.36 Total: 21.73 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 8.10 Total: 19.73 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -6.10 Total: -127.08 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -1.56 Total: -36.78 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -79.08 2.82 -76.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108449954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.751 kcal (2) G-P(sol) polarization free energy of solvation -79.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds