Wall clock time and date at job start Tue Mar 31 2020 19:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.62775 * 2 1 4 4 C 1.53242 * 109.63271 * 120.39105 * 2 1 3 5 5 N 1.46890 * 109.33949 * 65.88210 * 4 2 1 6 6 C 1.46905 * 111.00161 * 187.25432 * 5 4 2 7 7 C 1.50701 * 109.47360 * 169.99917 * 6 5 4 8 8 C 1.35014 * 120.44138 * 94.71760 * 7 6 5 9 9 N 1.36840 * 119.68365 * 180.25195 * 8 7 6 10 10 C 1.46496 * 119.68919 * 180.02562 * 9 8 7 11 11 C 1.34539 * 120.61813 * 0.02661 * 9 8 7 12 12 O 1.21593 * 119.53264 * 179.97438 * 11 9 8 13 13 N 1.34595 * 120.93203 * 359.97438 * 11 9 8 14 14 C 1.46509 * 119.86602 * 179.97438 * 13 11 9 15 15 C 1.34828 * 120.26721 * 359.97438 * 13 11 9 16 16 O 1.21785 * 120.31189 * 179.97438 * 15 13 11 17 17 C 1.46899 * 111.27194 * 63.10537 * 5 4 2 18 18 C 1.53241 * 109.33944 * 296.89653 * 17 5 4 19 19 H 1.09010 * 109.79017 * 294.02480 * 18 17 5 20 20 C 1.53004 * 109.63047 * 173.54055 * 18 17 5 21 21 N 1.47074 * 108.52270 * 53.82555 * 18 17 5 22 22 C 1.36936 * 120.88085 * 128.83591 * 21 18 17 23 23 H 1.07998 * 120.00299 * 331.97243 * 22 21 18 24 24 C 1.38813 * 120.00271 * 151.97474 * 22 21 18 25 25 N 1.31625 * 119.99668 * 342.70144 * 24 22 21 26 26 Si 1.86797 * 120.00352 * 162.70370 * 24 22 21 27 27 H 1.48502 * 109.47045 * 89.99918 * 26 24 22 28 28 H 1.48500 * 109.47234 * 210.00128 * 26 24 22 29 29 H 1.48499 * 109.46989 * 329.99744 * 26 24 22 30 30 H 1.09007 * 109.46956 * 299.60494 * 1 2 3 31 31 H 1.08991 * 109.47599 * 59.60969 * 1 2 3 32 32 H 1.09006 * 109.46742 * 179.61105 * 1 2 3 33 33 H 1.08993 * 109.49029 * 305.91692 * 4 2 1 34 34 H 1.09001 * 109.51345 * 185.85803 * 4 2 1 35 35 H 1.09000 * 109.46487 * 49.99519 * 6 5 4 36 36 H 1.08995 * 109.46674 * 289.99870 * 6 5 4 37 37 H 1.08002 * 120.16239 * 0.26251 * 8 7 6 38 38 H 1.08998 * 109.47069 * 180.02562 * 10 9 8 39 39 H 1.09004 * 109.47376 * 299.99998 * 10 9 8 40 40 H 1.09000 * 109.47720 * 59.99929 * 10 9 8 41 41 H 1.09002 * 109.46896 * 269.97878 * 14 13 11 42 42 H 1.08997 * 109.46835 * 29.97852 * 14 13 11 43 43 H 1.08999 * 109.47056 * 149.98450 * 14 13 11 44 44 H 1.09001 * 109.49433 * 56.85141 * 17 5 4 45 45 H 1.08996 * 109.49519 * 176.93834 * 17 5 4 46 46 H 1.09001 * 109.46769 * 296.78405 * 20 18 17 47 47 H 1.09000 * 109.47230 * 56.78664 * 20 18 17 48 48 H 1.08998 * 109.46765 * 176.78803 * 20 18 17 49 49 H 0.97006 * 119.99513 * 175.14831 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7302 1.2450 5 7 1.6748 -2.1494 1.1644 6 6 1.9981 -2.8496 2.4147 7 6 1.3886 -4.2277 2.3908 8 6 2.1150 -5.2899 1.9822 9 7 1.5445 -6.5335 1.9617 10 6 2.3328 -7.6862 1.5189 11 6 0.2665 -6.7075 2.3444 12 8 -0.2207 -7.8213 2.3180 13 7 -0.4802 -5.6662 2.7562 14 6 -1.8698 -5.8823 3.1673 15 6 0.0453 -4.4251 2.7918 16 8 -0.6299 -3.4822 3.1638 17 6 2.3149 -2.8026 0.0147 18 6 1.8111 -2.1573 -1.2807 19 1 0.7484 -2.3646 -1.4073 20 6 2.5897 -2.7197 -2.4717 21 7 2.0240 -0.7047 -1.1927 22 6 2.6649 -0.0263 -2.1948 23 1 3.3948 -0.5329 -2.8089 24 6 2.3766 1.3125 -2.4214 25 7 1.2765 1.8413 -1.9286 26 14 3.5496 2.3637 -3.4255 27 1 3.1706 2.2959 -4.8598 28 1 3.4748 3.7717 -2.9597 29 1 4.9358 1.8589 -3.2554 30 1 -0.3633 0.5077 0.8936 31 1 -0.3634 0.5198 -0.8864 32 1 -0.3633 -1.0277 -0.0070 33 1 1.5993 -0.2881 2.1361 34 1 3.1298 -0.6395 1.2977 35 1 1.5965 -2.2893 3.2591 36 1 3.0802 -2.9326 2.5153 37 1 3.1415 -5.1588 1.6730 38 1 1.7197 -8.5861 1.5680 39 1 2.6631 -7.5278 0.4923 40 1 3.2019 -7.8025 2.1663 41 1 -2.5251 -5.7761 2.3028 42 1 -1.9743 -6.8850 3.5816 43 1 -2.1436 -5.1463 3.9233 44 1 3.3961 -2.6830 0.0840 45 1 2.0651 -3.8635 0.0136 46 1 3.6422 -2.4527 -2.3764 47 1 2.4904 -3.8050 -2.4909 48 1 2.1912 -2.3020 -3.3962 49 1 1.1093 2.7918 -2.0264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119515323.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:10 Heat of formation + Delta-G solvation = 13.187284 kcal Electronic energy + Delta-G solvation = -31309.463535 eV Core-core repulsion = 27273.988828 eV Total energy + Delta-G solvation = -4035.474707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.44589 -39.24427 -38.52628 -37.42651 -35.32747 -34.99477 -32.52662 -32.47553 -30.83421 -28.69942 -27.86480 -27.22815 -26.35592 -25.70353 -24.10463 -23.70036 -22.88907 -21.37383 -20.66370 -19.48556 -18.50359 -17.61615 -17.29284 -16.95181 -16.20535 -15.70321 -15.32336 -15.14081 -14.98312 -14.70535 -14.54259 -14.06653 -13.82958 -13.78398 -13.67078 -13.22554 -13.14543 -12.96779 -12.85233 -12.55813 -12.12075 -12.03095 -11.70895 -11.61492 -11.41020 -11.12844 -11.05032 -10.87635 -10.81257 -10.57456 -10.50339 -10.38886 -10.20385 -10.00304 -9.86309 -9.85618 -9.43250 -9.16098 -8.57840 -8.37984 -7.69727 -6.57848 -5.68896 -3.14717 0.87106 1.76307 1.86841 2.83945 3.35016 3.39873 3.47909 3.48675 4.18207 4.33631 4.52432 4.60740 4.79268 4.88096 4.94716 5.16844 5.19640 5.22854 5.25116 5.32973 5.38226 5.44376 5.54045 5.69687 5.79272 5.86351 5.91728 6.00507 6.10296 6.16486 6.21350 6.26743 6.32699 6.36573 6.44736 6.68218 6.91733 6.98194 7.06942 7.09482 7.21692 7.30567 7.40535 7.59111 7.65238 7.78136 7.85562 7.91812 8.04687 8.51081 9.29549 9.91660 10.50855 11.35782 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.003326 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.544466 B = 8417.518624 C = 9095.844911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.200 3.800 3 H 0.091 0.909 4 C 0.045 3.955 5 N -0.522 5.522 6 C 0.125 3.875 7 C -0.230 4.230 8 C 0.158 3.842 9 N -0.537 5.537 10 C 0.075 3.925 11 C 0.694 3.306 12 O -0.550 6.550 13 N -0.559 5.559 14 C 0.082 3.918 15 C 0.554 3.446 16 O -0.492 6.492 17 C 0.048 3.952 18 C 0.172 3.828 19 H 0.031 0.969 20 C -0.136 4.136 21 N -0.584 5.584 22 C -0.248 4.248 23 H 0.069 0.931 24 C 0.003 3.997 25 N -0.894 5.894 26 Si 0.894 3.106 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.020 0.980 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.024 0.976 35 H 0.088 0.912 36 H 0.039 0.961 37 H 0.174 0.826 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.027 0.973 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.036 0.964 48 H 0.060 0.940 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -17.399 10.124 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.093 3.907 3 H 0.109 0.891 4 C -0.084 4.084 5 N -0.247 5.247 6 C -0.004 4.004 7 C -0.240 4.240 8 C 0.035 3.965 9 N -0.257 5.257 10 C -0.067 4.067 11 C 0.397 3.603 12 O -0.425 6.425 13 N -0.303 5.303 14 C -0.060 4.060 15 C 0.349 3.651 16 O -0.364 6.364 17 C -0.082 4.082 18 C 0.065 3.935 19 H 0.048 0.952 20 C -0.194 4.194 21 N -0.307 5.307 22 C -0.378 4.378 23 H 0.086 0.914 24 C -0.195 4.195 25 N -0.538 5.538 26 Si 0.724 3.276 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.039 0.961 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.191 0.809 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.055 0.945 48 H 0.080 0.920 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.597 -17.448 10.161 20.254 hybrid contribution 1.462 0.661 -0.461 1.669 sum 3.059 -16.787 9.701 19.628 Atomic orbital electron populations 1.21948 0.97783 0.99315 1.00374 1.20349 0.92733 0.95448 0.82130 0.89136 1.22845 0.97361 0.87011 1.01142 1.61862 1.59078 1.02751 1.00973 1.20539 0.96139 0.88782 0.94949 1.20488 0.94187 0.97138 1.12200 1.22154 0.99315 0.82539 0.92484 1.44543 1.11105 1.09400 1.60698 1.22128 0.95739 0.87911 1.00902 1.15862 0.80883 0.84796 0.78762 1.90975 1.70610 1.22224 1.58646 1.46387 1.15196 1.08380 1.60352 1.21866 0.78173 1.03922 1.02001 1.17101 0.88123 0.81467 0.78417 1.90893 1.62083 1.38959 1.44495 1.22696 0.95756 0.96983 0.92721 1.20434 0.96367 0.86060 0.90650 0.95178 1.21795 1.00696 0.97595 0.99341 1.44259 1.66978 1.00974 1.18470 1.19163 1.14678 0.93567 1.10373 0.91366 1.24990 0.96115 0.99063 0.99379 1.70074 1.22601 1.11510 1.49655 0.86450 0.81013 0.80103 0.80031 1.21626 1.21732 1.20783 0.96079 0.90818 0.94812 0.91922 0.95772 0.89357 0.94260 0.80899 0.87883 0.90006 0.90204 0.90872 0.89335 0.88905 0.95446 0.92820 0.92760 0.94537 0.92044 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.98 37.15 0.33 -2.86 16 2 C 0.20 4.66 2.34 -67.49 -0.16 4.51 16 3 H 0.09 2.38 6.25 -51.93 -0.32 2.05 16 4 C 0.05 0.87 5.01 -3.70 -0.02 0.85 16 5 N -0.52 -9.12 4.12 -235.77 -0.97 -10.09 16 6 C 0.12 1.74 4.87 -4.97 -0.02 1.71 16 7 C -0.23 -2.93 4.77 -104.49 -0.50 -3.43 16 8 C 0.16 1.48 8.52 -16.46 -0.14 1.34 16 9 N -0.54 -5.11 3.01 -128.98 -0.39 -5.50 16 10 C 0.07 0.43 10.59 59.84 0.63 1.06 16 11 C 0.69 8.61 8.12 -87.29 -0.71 7.90 16 12 O -0.55 -7.69 15.10 5.28 0.08 -7.61 16 13 N -0.56 -7.32 2.96 -131.49 -0.39 -7.71 16 14 C 0.08 0.89 10.13 59.85 0.61 1.49 16 15 C 0.55 8.21 7.43 -14.96 -0.11 8.10 16 16 O -0.49 -8.81 15.96 5.11 0.08 -8.73 16 17 C 0.05 0.81 4.68 -3.70 -0.02 0.79 16 18 C 0.17 3.53 3.25 -67.49 -0.22 3.31 16 19 H 0.03 0.69 7.61 -51.92 -0.40 0.30 16 20 C -0.14 -2.47 7.95 37.16 0.30 -2.18 16 21 N -0.58 -14.02 2.72 -157.00 -0.43 -14.44 16 22 C -0.25 -6.49 8.72 -15.06 -0.13 -6.62 16 23 H 0.07 1.75 6.17 -52.49 -0.32 1.42 16 24 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 25 N -0.89 -25.06 9.81 55.49 0.54 -24.52 16 26 Si 0.89 21.25 29.59 -169.99 -5.03 16.22 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 30 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.07 1.96 6.78 -51.93 -0.35 1.60 16 32 H 0.03 0.79 7.06 -51.93 -0.37 0.43 16 33 H 0.06 1.15 7.99 -51.93 -0.41 0.73 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 1.30 7.62 -51.93 -0.40 0.91 16 36 H 0.04 0.46 8.04 -51.93 -0.42 0.05 16 37 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.10 0.70 6.84 -51.93 -0.36 0.34 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 0.85 7.39 -51.93 -0.38 0.47 16 43 H 0.09 0.97 7.42 -51.93 -0.39 0.59 16 44 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.79 5.98 -51.93 -0.31 0.48 16 46 H 0.05 0.99 7.33 -51.93 -0.38 0.61 16 47 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 1.21 7.78 -51.93 -0.40 0.81 16 49 H 0.25 6.90 8.32 -40.82 -0.34 6.56 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -32.96 378.52 -8.77 -41.72 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.73 Total: -1.02 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: -0.24 Total: 15.98 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -1.63 Total: -62.27 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.16 Total: -16.34 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.96 -8.77 -41.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119515323.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.911 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds