Wall clock time and date at job start Tue Mar 31 2020 19:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.62775 * 2 1 4 4 C 1.53242 * 109.63271 * 120.39105 * 2 1 3 5 5 N 1.46890 * 109.33949 * 65.88210 * 4 2 1 6 6 C 1.46905 * 111.00161 * 187.25432 * 5 4 2 7 7 C 1.50701 * 109.47360 * 169.99917 * 6 5 4 8 8 C 1.35014 * 120.44138 * 94.71760 * 7 6 5 9 9 N 1.36840 * 119.68365 * 180.25195 * 8 7 6 10 10 C 1.46496 * 119.68919 * 180.02562 * 9 8 7 11 11 C 1.34539 * 120.61813 * 0.02661 * 9 8 7 12 12 O 1.21593 * 119.53264 * 179.97438 * 11 9 8 13 13 N 1.34595 * 120.93203 * 359.97438 * 11 9 8 14 14 C 1.46509 * 119.86602 * 179.97438 * 13 11 9 15 15 C 1.34828 * 120.26721 * 359.97438 * 13 11 9 16 16 O 1.21785 * 120.31189 * 179.97438 * 15 13 11 17 17 C 1.46899 * 111.27194 * 63.10537 * 5 4 2 18 18 C 1.53241 * 109.33944 * 296.89653 * 17 5 4 19 19 H 1.09010 * 109.79017 * 294.02480 * 18 17 5 20 20 C 1.53004 * 109.63047 * 173.54055 * 18 17 5 21 21 N 1.47074 * 108.52270 * 53.82555 * 18 17 5 22 22 C 1.36936 * 120.88085 * 128.83591 * 21 18 17 23 23 H 1.07998 * 120.00299 * 331.97243 * 22 21 18 24 24 C 1.38813 * 120.00271 * 151.97474 * 22 21 18 25 25 N 1.31625 * 119.99668 * 342.70144 * 24 22 21 26 26 Si 1.86797 * 120.00352 * 162.70370 * 24 22 21 27 27 H 1.48502 * 109.47045 * 89.99918 * 26 24 22 28 28 H 1.48500 * 109.47234 * 210.00128 * 26 24 22 29 29 H 1.48499 * 109.46989 * 329.99744 * 26 24 22 30 30 H 1.09007 * 109.46956 * 299.60494 * 1 2 3 31 31 H 1.08991 * 109.47599 * 59.60969 * 1 2 3 32 32 H 1.09006 * 109.46742 * 179.61105 * 1 2 3 33 33 H 1.08993 * 109.49029 * 305.91692 * 4 2 1 34 34 H 1.09001 * 109.51345 * 185.85803 * 4 2 1 35 35 H 1.09000 * 109.46487 * 49.99519 * 6 5 4 36 36 H 1.08995 * 109.46674 * 289.99870 * 6 5 4 37 37 H 1.08002 * 120.16239 * 0.26251 * 8 7 6 38 38 H 1.08998 * 109.47069 * 180.02562 * 10 9 8 39 39 H 1.09004 * 109.47376 * 299.99998 * 10 9 8 40 40 H 1.09000 * 109.47720 * 59.99929 * 10 9 8 41 41 H 1.09002 * 109.46896 * 269.97878 * 14 13 11 42 42 H 1.08997 * 109.46835 * 29.97852 * 14 13 11 43 43 H 1.08999 * 109.47056 * 149.98450 * 14 13 11 44 44 H 1.09001 * 109.49433 * 56.85141 * 17 5 4 45 45 H 1.08996 * 109.49519 * 176.93834 * 17 5 4 46 46 H 1.09001 * 109.46769 * 296.78405 * 20 18 17 47 47 H 1.09000 * 109.47230 * 56.78664 * 20 18 17 48 48 H 1.08998 * 109.46765 * 176.78803 * 20 18 17 49 49 H 0.97006 * 119.99513 * 175.14831 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7302 1.2450 5 7 1.6748 -2.1494 1.1644 6 6 1.9981 -2.8496 2.4147 7 6 1.3886 -4.2277 2.3908 8 6 2.1150 -5.2899 1.9822 9 7 1.5445 -6.5335 1.9617 10 6 2.3328 -7.6862 1.5189 11 6 0.2665 -6.7075 2.3444 12 8 -0.2207 -7.8213 2.3180 13 7 -0.4802 -5.6662 2.7562 14 6 -1.8698 -5.8823 3.1673 15 6 0.0453 -4.4251 2.7918 16 8 -0.6299 -3.4822 3.1638 17 6 2.3149 -2.8026 0.0147 18 6 1.8111 -2.1573 -1.2807 19 1 0.7484 -2.3646 -1.4073 20 6 2.5897 -2.7197 -2.4717 21 7 2.0240 -0.7047 -1.1927 22 6 2.6649 -0.0263 -2.1948 23 1 3.3948 -0.5329 -2.8089 24 6 2.3766 1.3125 -2.4214 25 7 1.2765 1.8413 -1.9286 26 14 3.5496 2.3637 -3.4255 27 1 3.1706 2.2959 -4.8598 28 1 3.4748 3.7717 -2.9597 29 1 4.9358 1.8589 -3.2554 30 1 -0.3633 0.5077 0.8936 31 1 -0.3634 0.5198 -0.8864 32 1 -0.3633 -1.0277 -0.0070 33 1 1.5993 -0.2881 2.1361 34 1 3.1298 -0.6395 1.2977 35 1 1.5965 -2.2893 3.2591 36 1 3.0802 -2.9326 2.5153 37 1 3.1415 -5.1588 1.6730 38 1 1.7197 -8.5861 1.5680 39 1 2.6631 -7.5278 0.4923 40 1 3.2019 -7.8025 2.1663 41 1 -2.5251 -5.7761 2.3028 42 1 -1.9743 -6.8850 3.5816 43 1 -2.1436 -5.1463 3.9233 44 1 3.3961 -2.6830 0.0840 45 1 2.0651 -3.8635 0.0136 46 1 3.6422 -2.4527 -2.3764 47 1 2.4904 -3.8050 -2.4909 48 1 2.1912 -2.3020 -3.3962 49 1 1.1093 2.7918 -2.0264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119515323.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:09 Heat of formation + Delta-G solvation = -8.701581 kcal Electronic energy + Delta-G solvation = -31310.412707 eV Core-core repulsion = 27273.988828 eV Total energy + Delta-G solvation = -4036.423879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.37849 -40.37655 -39.88274 -38.40899 -36.55273 -36.25540 -34.20125 -33.82817 -32.38008 -29.82150 -29.36760 -28.12805 -27.59310 -27.07225 -25.83672 -24.66605 -24.18278 -22.59921 -22.26524 -20.50744 -20.17676 -18.51251 -18.24893 -17.96339 -17.86423 -17.02351 -16.57425 -16.26922 -16.16702 -15.81656 -15.76495 -15.62151 -15.38214 -15.00375 -14.85536 -14.62183 -14.44431 -13.90627 -13.79390 -13.60626 -13.37675 -13.29052 -13.18818 -13.06280 -12.81546 -12.69144 -12.42391 -12.31313 -12.17108 -12.13518 -12.09225 -11.99351 -11.85442 -11.58554 -11.30806 -11.20305 -10.93961 -10.87747 -10.40826 -9.45932 -9.01428 -8.49210 -7.69894 -5.17776 0.00522 0.87883 0.94686 1.50175 1.52738 1.60579 1.95990 2.36671 2.59723 3.23695 3.39716 3.41923 3.65990 3.68186 4.04520 4.19099 4.26840 4.30485 4.34868 4.40451 4.40964 4.47930 4.57581 4.59403 4.65858 4.67164 4.68813 4.82062 4.83734 4.89918 4.90382 4.91953 4.99751 5.02147 5.11394 5.20624 5.28160 5.34722 5.35620 5.49074 5.59604 5.74495 5.81530 6.01671 6.14517 6.33995 6.44106 6.45515 6.53865 6.86671 7.29693 8.00567 8.55251 9.32134 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.003326 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.544466 B = 8417.518624 C = 9095.844911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.198 3.802 3 H 0.055 0.945 4 C 0.061 3.939 5 N -0.542 5.542 6 C 0.134 3.866 7 C -0.269 4.269 8 C 0.203 3.797 9 N -0.528 5.528 10 C 0.066 3.934 11 C 0.686 3.314 12 O -0.569 6.569 13 N -0.564 5.564 14 C 0.079 3.921 15 C 0.547 3.453 16 O -0.542 6.542 17 C 0.062 3.938 18 C 0.161 3.839 19 H 0.000 1.000 20 C -0.126 4.126 21 N -0.597 5.597 22 C -0.247 4.247 23 H 0.075 0.925 24 C -0.051 4.051 25 N -0.924 5.924 26 Si 0.954 3.046 27 H -0.293 1.293 28 H -0.300 1.300 29 H -0.270 1.270 30 H 0.027 0.973 31 H 0.037 0.963 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.223 0.777 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.055 0.945 47 H 0.076 0.924 48 H 0.035 0.965 49 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.975 -20.393 10.288 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 H 0.073 0.927 4 C -0.068 4.068 5 N -0.267 5.267 6 C 0.006 3.994 7 C -0.279 4.279 8 C 0.078 3.922 9 N -0.247 5.247 10 C -0.073 4.073 11 C 0.390 3.610 12 O -0.445 6.445 13 N -0.307 5.307 14 C -0.062 4.062 15 C 0.344 3.656 16 O -0.419 6.419 17 C -0.067 4.067 18 C 0.055 3.945 19 H 0.017 0.983 20 C -0.184 4.184 21 N -0.321 5.321 22 C -0.377 4.377 23 H 0.093 0.907 24 C -0.246 4.246 25 N -0.571 5.571 26 Si 0.783 3.217 27 H -0.220 1.220 28 H -0.227 1.227 29 H -0.195 1.195 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.239 0.761 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.074 0.926 47 H 0.095 0.905 48 H 0.054 0.946 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.716 -20.525 10.323 23.453 hybrid contribution 0.458 1.403 -0.525 1.567 sum 5.174 -19.121 9.798 22.100 Atomic orbital electron populations 1.21725 0.98694 0.98207 0.98873 1.20212 0.91892 0.94521 0.84216 0.92688 1.22467 0.97252 0.88388 0.98710 1.61734 1.60054 1.01871 1.03053 1.20424 0.97960 0.88785 0.92214 1.20237 0.93726 0.97713 1.16183 1.22704 1.00283 0.81121 0.88093 1.44865 1.10210 1.10701 1.58913 1.22513 0.95866 0.85852 1.03095 1.16073 0.81861 0.84238 0.78842 1.90969 1.71291 1.22756 1.59475 1.46517 1.15881 1.08359 1.59936 1.21946 0.77729 1.04499 1.02072 1.17548 0.88950 0.81248 0.77816 1.90865 1.63365 1.40322 1.47327 1.22494 0.96064 0.97879 0.90246 1.20678 0.95334 0.84363 0.94107 0.98256 1.21690 0.99933 0.99875 0.96902 1.44501 1.66802 1.02580 1.18188 1.19505 1.14250 0.93760 1.10190 0.90699 1.25672 0.97477 1.00407 1.01074 1.70249 1.24189 1.10954 1.51681 0.85500 0.79777 0.78122 0.78273 1.21998 1.22652 1.19545 0.95400 0.94400 0.95393 0.91528 0.95321 0.91010 0.90914 0.76082 0.89155 0.87545 0.86918 0.90839 0.88166 0.89098 0.94164 0.89803 0.92565 0.90526 0.94579 0.94829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.98 71.98 0.65 -5.06 16 2 C 0.20 9.44 2.34 44.96 0.11 9.55 16 3 H 0.06 3.00 6.25 -2.39 -0.01 2.99 16 4 C 0.06 2.31 5.01 86.39 0.43 2.74 16 5 N -0.54 -17.86 4.12 -899.85 -3.71 -21.57 16 6 C 0.13 3.34 4.87 85.56 0.42 3.76 16 7 C -0.27 -6.02 4.77 -19.78 -0.09 -6.11 16 8 C 0.20 2.69 8.52 83.17 0.71 3.40 16 9 N -0.53 -7.67 3.01 -680.37 -2.05 -9.72 16 10 C 0.07 0.41 10.59 127.77 1.35 1.76 16 11 C 0.69 15.41 8.12 179.19 1.45 16.87 16 12 O -0.57 -14.84 15.10 -4.01 -0.06 -14.90 16 13 N -0.56 -14.22 2.96 -806.43 -2.39 -16.61 16 14 C 0.08 1.72 10.13 127.77 1.29 3.01 16 15 C 0.55 15.77 7.43 85.06 0.63 16.40 16 16 O -0.54 -19.91 15.96 -4.62 -0.07 -19.98 16 17 C 0.06 1.88 4.68 86.38 0.40 2.28 16 18 C 0.16 6.39 3.25 44.96 0.15 6.54 16 19 H 0.00 -0.01 7.61 -2.38 -0.02 -0.03 16 20 C -0.13 -4.26 7.95 71.98 0.57 -3.68 16 21 N -0.60 -28.74 2.72 -650.64 -1.77 -30.51 16 22 C -0.25 -12.93 8.72 84.03 0.73 -12.19 16 23 H 0.08 3.76 6.17 -2.91 -0.02 3.74 16 24 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 25 N -0.92 -53.92 9.81 21.65 0.21 -53.71 16 26 Si 0.95 44.38 29.59 68.60 2.03 46.41 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 29 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 30 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.04 2.10 6.78 -2.39 -0.02 2.09 16 32 H 0.03 1.36 7.06 -2.38 -0.02 1.34 16 33 H 0.07 2.43 7.99 -2.39 -0.02 2.41 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 2.03 7.62 -2.39 -0.02 2.01 16 36 H 0.07 1.34 8.04 -2.39 -0.02 1.32 16 37 H 0.22 0.88 8.06 -2.91 -0.02 0.86 16 38 H 0.09 0.88 6.84 -2.39 -0.02 0.87 16 39 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 40 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.10 1.90 7.39 -2.39 -0.02 1.88 16 43 H 0.09 1.99 7.42 -2.39 -0.02 1.97 16 44 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 2.01 5.98 -2.39 -0.01 2.00 16 46 H 0.06 1.87 7.33 -2.39 -0.02 1.85 16 47 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.04 1.37 7.78 -2.39 -0.02 1.35 16 49 H 0.24 13.96 8.32 -92.70 -0.77 13.19 16 Total: -1.00 -76.78 378.52 2.36 -74.42 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.95 Total: 9.28 kcal Atomic # 6 Polarization: 27.66 SS G_CDS: 9.22 Total: 36.88 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -9.71 Total: -132.12 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.13 Total: -34.89 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -76.78 2.36 -74.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119515323.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.718 kcal (2) G-P(sol) polarization free energy of solvation -76.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds