Wall clock time and date at job start Tue Mar 31 2020 19:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.62794 * 2 1 4 4 C 1.53239 * 109.63122 * 239.60841 * 2 1 3 5 5 N 1.46899 * 109.33886 * 186.46588 * 4 2 1 6 6 C 1.46907 * 110.99581 * 187.25407 * 5 4 2 7 7 C 1.50703 * 109.46915 * 169.99788 * 6 5 4 8 8 C 1.35020 * 120.44355 * 94.99610 * 7 6 5 9 9 N 1.36830 * 119.68568 * 179.97438 * 8 7 6 10 10 C 1.46504 * 119.69116 * 180.02562 * 9 8 7 11 11 C 1.34538 * 120.62002 * 0.02562 * 9 8 7 12 12 O 1.21589 * 119.53823 * 179.97438 * 11 9 8 13 13 N 1.34600 * 120.93441 * 0.02562 * 11 9 8 14 14 C 1.46500 * 119.86882 * 179.97438 * 13 11 9 15 15 C 1.34841 * 120.25641 * 359.66500 * 13 11 9 16 16 O 1.21785 * 120.30354 * 180.30621 * 15 13 11 17 17 C 1.46896 * 111.27363 * 63.10453 * 5 4 2 18 18 C 1.53243 * 109.33686 * 296.89637 * 17 5 4 19 19 H 1.09004 * 109.62671 * 294.11791 * 18 17 5 20 20 C 1.53006 * 109.62572 * 173.54082 * 18 17 5 21 21 N 1.47077 * 108.52075 * 53.82880 * 18 17 5 22 22 C 1.36941 * 120.87600 * 128.79565 * 21 18 17 23 23 H 1.07994 * 120.00274 * 307.27463 * 22 21 18 24 24 C 1.38813 * 119.99769 * 127.27838 * 22 21 18 25 25 N 1.31616 * 120.00010 * 156.81788 * 24 22 21 26 26 Si 1.86802 * 120.00081 * 336.82185 * 24 22 21 27 27 H 1.48503 * 109.47187 * 95.27050 * 26 24 22 28 28 H 1.48502 * 109.46851 * 215.26796 * 26 24 22 29 29 H 1.48496 * 109.47216 * 335.27243 * 26 24 22 30 30 H 1.08996 * 109.47261 * 187.28369 * 1 2 3 31 31 H 1.09003 * 109.47225 * 307.29048 * 1 2 3 32 32 H 1.09004 * 109.46816 * 67.29004 * 1 2 3 33 33 H 1.08998 * 109.49144 * 306.42082 * 4 2 1 34 34 H 1.08991 * 109.49142 * 66.50225 * 4 2 1 35 35 H 1.08996 * 109.46976 * 289.99624 * 6 5 4 36 36 H 1.08993 * 109.47043 * 49.99828 * 6 5 4 37 37 H 1.08004 * 120.15877 * 0.02815 * 8 7 6 38 38 H 1.09008 * 109.46576 * 90.00368 * 10 9 8 39 39 H 1.08997 * 109.47336 * 209.99877 * 10 9 8 40 40 H 1.09000 * 109.46947 * 330.00748 * 10 9 8 41 41 H 1.08993 * 109.47319 * 0.02562 * 14 13 11 42 42 H 1.09005 * 109.46687 * 120.00202 * 14 13 11 43 43 H 1.08999 * 109.47055 * 239.99618 * 14 13 11 44 44 H 1.08996 * 109.49567 * 176.93343 * 17 5 4 45 45 H 1.09003 * 109.49132 * 56.85376 * 17 5 4 46 46 H 1.09003 * 109.47086 * 303.68439 * 20 18 17 47 47 H 1.08994 * 109.47201 * 63.68566 * 20 18 17 48 48 H 1.09003 * 109.46893 * 183.68388 * 20 18 17 49 49 H 0.96996 * 120.00368 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7302 -1.2450 5 7 3.5055 -0.8625 -1.1621 6 6 4.0569 -1.4023 -2.4122 7 6 5.5599 -1.2953 -2.3858 8 6 6.3131 -2.3407 -1.9824 9 7 7.6766 -2.2268 -1.9650 10 6 8.4941 -3.3612 -1.5279 11 6 8.2735 -1.0827 -2.3454 12 8 9.4865 -1.0028 -2.3218 13 7 7.5469 -0.0247 -2.7510 14 6 8.2211 1.2100 -3.1597 15 6 6.2010 -0.0990 -2.7884 16 8 5.5430 0.8558 -3.1605 17 6 3.9015 -1.6871 -0.0128 18 6 3.4628 -0.9961 1.2827 19 1 4.0176 -0.0662 1.4077 20 6 3.7266 -1.9206 2.4731 21 7 2.0240 -0.7048 1.1927 22 6 1.1670 -1.0802 2.1926 23 1 1.1518 -2.1044 2.5347 24 6 0.3177 -0.1441 2.7666 25 7 -0.7858 -0.5373 3.3665 26 14 0.7409 1.6736 2.6873 27 1 0.0516 2.2922 1.5265 28 1 0.2982 2.3398 3.9385 29 1 2.2092 1.8338 2.5340 30 1 -0.3633 -1.0193 0.1303 31 1 -0.3634 0.6226 0.8176 32 1 -0.3633 0.3968 -0.9480 33 1 1.5924 -1.7204 -1.2990 34 1 1.7811 -0.1603 -2.1359 35 1 3.7688 -2.4485 -2.5145 36 1 3.6670 -0.8338 -3.2565 37 1 5.8418 -3.2628 -1.6759 38 1 8.7379 -3.9858 -2.3874 39 1 9.4139 -2.9927 -1.0740 40 1 7.9385 -3.9493 -0.7974 41 1 9.2997 1.0821 -3.0691 42 1 7.9681 1.4363 -4.1955 43 1 7.8970 2.0301 -2.5190 44 1 4.9844 -1.8113 -0.0101 45 1 3.4232 -2.6640 -0.0840 46 1 3.2153 -2.8703 2.3158 47 1 4.7982 -2.0960 2.5664 48 1 3.3540 -1.4540 3.3850 49 1 -1.3791 0.1167 3.7679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119515324.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:15 Heat of formation + Delta-G solvation = 15.144206 kcal Electronic energy + Delta-G solvation = -31250.916631 eV Core-core repulsion = 27215.526782 eV Total energy + Delta-G solvation = -4035.389848 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.50937 -39.31292 -38.65174 -37.53205 -35.42877 -35.19902 -32.90081 -32.56406 -31.30979 -28.85296 -27.99458 -27.30244 -26.43614 -25.94516 -24.49654 -23.79837 -22.65182 -21.12884 -20.50911 -19.59736 -19.15051 -17.66197 -17.35955 -17.04212 -16.45120 -15.75450 -15.49672 -15.25010 -15.08636 -14.86362 -14.71495 -14.47524 -14.12276 -13.78443 -13.65551 -13.40579 -13.12389 -13.07082 -12.67631 -12.58682 -12.41079 -12.19547 -12.00083 -11.86497 -11.69881 -11.49788 -11.11930 -11.07407 -11.05215 -10.69614 -10.43880 -10.27349 -10.18535 -10.11191 -9.92624 -9.91331 -9.65932 -9.42678 -8.63372 -8.36143 -7.88595 -6.42360 -6.01024 -3.54427 0.80025 1.70031 1.80603 2.77541 3.27979 3.38763 3.50925 3.63282 4.12487 4.23039 4.44234 4.56674 4.70704 4.84869 4.87558 4.95209 5.10062 5.12418 5.17194 5.19261 5.27019 5.31681 5.48418 5.59255 5.67688 5.73321 5.79874 5.87002 5.99518 6.05161 6.07943 6.14701 6.20322 6.30827 6.32205 6.46303 6.48810 6.57764 6.74986 7.00563 7.01061 7.08643 7.18397 7.34322 7.39447 7.52028 7.59321 7.78821 8.12978 8.54327 9.06757 9.72412 10.30380 11.12314 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.003485 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.510157 B = 8032.994763 C = 8446.570761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.171 3.829 3 H 0.030 0.970 4 C 0.053 3.947 5 N -0.531 5.531 6 C 0.127 3.873 7 C -0.235 4.235 8 C 0.161 3.839 9 N -0.536 5.536 10 C 0.080 3.920 11 C 0.693 3.307 12 O -0.548 6.548 13 N -0.559 5.559 14 C 0.080 3.920 15 C 0.555 3.445 16 O -0.494 6.494 17 C 0.047 3.953 18 C 0.168 3.832 19 H 0.031 0.969 20 C -0.130 4.130 21 N -0.597 5.597 22 C -0.270 4.270 23 H 0.070 0.930 24 C 0.059 3.941 25 N -0.893 5.893 26 Si 0.867 3.133 27 H -0.280 1.280 28 H -0.302 1.302 29 H -0.269 1.269 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.089 0.911 37 H 0.175 0.825 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.032 0.968 46 H 0.052 0.948 47 H 0.035 0.965 48 H 0.068 0.932 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.486 -6.285 -12.743 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.065 3.935 3 H 0.048 0.952 4 C -0.076 4.076 5 N -0.255 5.255 6 C -0.002 4.002 7 C -0.244 4.244 8 C 0.038 3.962 9 N -0.256 5.256 10 C -0.061 4.061 11 C 0.397 3.603 12 O -0.423 6.423 13 N -0.303 5.303 14 C -0.061 4.061 15 C 0.349 3.651 16 O -0.366 6.366 17 C -0.082 4.082 18 C 0.062 3.938 19 H 0.049 0.951 20 C -0.188 4.188 21 N -0.324 5.324 22 C -0.398 4.398 23 H 0.087 0.913 24 C -0.144 4.144 25 N -0.533 5.533 26 Si 0.695 3.305 27 H -0.207 1.207 28 H -0.230 1.230 29 H -0.193 1.193 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.192 0.808 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.050 0.950 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.087 0.913 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.941 -5.196 -12.749 21.830 hybrid contribution -0.179 0.284 -0.037 0.338 sum 16.762 -4.912 -12.787 21.647 Atomic orbital electron populations 1.22000 0.94766 1.03506 0.99645 1.20686 0.93356 0.93977 0.85524 0.95191 1.22646 0.85601 0.99633 0.99712 1.61826 1.11668 1.50472 1.01532 1.20508 0.86877 0.98297 0.94494 1.20451 0.98124 0.93220 1.12642 1.22218 0.81599 1.00203 0.92215 1.44578 1.06416 1.13963 1.60690 1.22095 0.96665 0.86129 1.01224 1.15865 0.85622 0.80067 0.78783 1.90980 1.10966 1.81871 1.58462 1.46402 1.08662 1.14749 1.60506 1.21893 0.99077 0.83586 1.01530 1.17075 0.80181 0.89357 0.78441 1.90888 1.62932 1.38231 1.44590 1.22702 0.98421 0.94765 0.92316 1.20617 0.86709 0.95300 0.91127 0.95149 1.21711 0.97983 0.99782 0.99369 1.44488 1.01521 1.68530 1.17830 1.18384 1.14880 0.94027 1.12524 0.91262 1.25823 0.95909 0.97639 0.94984 1.69905 1.10278 1.34520 1.38549 0.87200 0.79704 0.87422 0.76143 1.20710 1.22964 1.19325 0.91319 0.91436 0.94774 0.94720 0.91680 0.93967 0.89272 0.80784 0.90668 0.88699 0.89072 0.88393 0.90393 0.90201 0.92519 0.95010 0.92917 0.94625 0.91277 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 7.84 37.16 0.29 -2.82 16 2 C 0.17 3.71 2.46 -67.49 -0.17 3.54 16 3 H 0.03 0.71 7.45 -51.93 -0.39 0.33 16 4 C 0.05 0.95 4.91 -3.70 -0.02 0.94 16 5 N -0.53 -8.87 4.62 -235.77 -1.09 -9.96 16 6 C 0.13 1.66 4.88 -4.97 -0.02 1.64 16 7 C -0.23 -2.84 4.76 -104.50 -0.50 -3.34 16 8 C 0.16 1.41 8.47 -16.46 -0.14 1.27 16 9 N -0.54 -4.84 3.01 -128.97 -0.39 -5.22 16 10 C 0.08 0.43 10.37 59.85 0.62 1.05 16 11 C 0.69 8.29 8.12 -87.29 -0.71 7.58 16 12 O -0.55 -7.44 15.10 5.29 0.08 -7.36 16 13 N -0.56 -7.06 2.96 -131.50 -0.39 -7.45 16 14 C 0.08 0.84 10.04 59.85 0.60 1.44 16 15 C 0.55 7.92 7.43 -14.96 -0.11 7.81 16 16 O -0.49 -8.58 16.37 5.11 0.08 -8.50 16 17 C 0.05 0.77 4.68 -3.70 -0.02 0.75 16 18 C 0.17 3.38 3.66 -67.49 -0.25 3.14 16 19 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 20 C -0.13 -2.39 8.19 37.16 0.30 -2.08 16 21 N -0.60 -13.86 2.26 -157.00 -0.36 -14.22 16 22 C -0.27 -7.12 7.13 -15.06 -0.11 -7.22 16 23 H 0.07 1.99 7.40 -52.49 -0.39 1.60 16 24 C 0.06 1.62 3.88 -17.43 -0.07 1.55 16 25 N -0.89 -26.04 13.97 55.49 0.78 -25.27 16 26 Si 0.87 22.26 24.78 -169.99 -4.21 18.05 16 27 H -0.28 -7.03 6.46 56.52 0.37 -6.67 16 28 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 29 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 30 H 0.07 1.59 7.69 -51.93 -0.40 1.19 16 31 H 0.07 1.66 3.38 -51.93 -0.18 1.48 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.08 7.99 -51.93 -0.41 0.67 16 35 H 0.04 0.46 8.03 -51.93 -0.42 0.05 16 36 H 0.09 1.23 7.62 -51.93 -0.40 0.83 16 37 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 39 H 0.09 0.59 7.37 -51.93 -0.38 0.21 16 40 H 0.09 0.27 8.03 -51.93 -0.42 -0.15 16 41 H 0.10 0.94 6.86 -51.93 -0.36 0.58 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.79 6.00 -51.93 -0.31 0.48 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.97 7.76 -51.93 -0.40 0.56 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 1.42 7.52 -51.93 -0.39 1.03 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -34.01 375.17 -7.95 -41.95 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -7.81 Total: -2.93 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: -0.29 Total: 15.25 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -1.45 Total: -62.12 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.16 Total: -15.86 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.21 Total: 18.05 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.01 -7.95 -41.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119515324.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.095 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds