Wall clock time and date at job start Tue Mar 31 2020 19:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.62794 * 2 1 4 4 C 1.53239 * 109.63122 * 239.60841 * 2 1 3 5 5 N 1.46899 * 109.33886 * 186.46588 * 4 2 1 6 6 C 1.46907 * 110.99581 * 187.25407 * 5 4 2 7 7 C 1.50703 * 109.46915 * 169.99788 * 6 5 4 8 8 C 1.35020 * 120.44355 * 94.99610 * 7 6 5 9 9 N 1.36830 * 119.68568 * 179.97438 * 8 7 6 10 10 C 1.46504 * 119.69116 * 180.02562 * 9 8 7 11 11 C 1.34538 * 120.62002 * 0.02562 * 9 8 7 12 12 O 1.21589 * 119.53823 * 179.97438 * 11 9 8 13 13 N 1.34600 * 120.93441 * 0.02562 * 11 9 8 14 14 C 1.46500 * 119.86882 * 179.97438 * 13 11 9 15 15 C 1.34841 * 120.25641 * 359.66500 * 13 11 9 16 16 O 1.21785 * 120.30354 * 180.30621 * 15 13 11 17 17 C 1.46896 * 111.27363 * 63.10453 * 5 4 2 18 18 C 1.53243 * 109.33686 * 296.89637 * 17 5 4 19 19 H 1.09004 * 109.62671 * 294.11791 * 18 17 5 20 20 C 1.53006 * 109.62572 * 173.54082 * 18 17 5 21 21 N 1.47077 * 108.52075 * 53.82880 * 18 17 5 22 22 C 1.36941 * 120.87600 * 128.79565 * 21 18 17 23 23 H 1.07994 * 120.00274 * 307.27463 * 22 21 18 24 24 C 1.38813 * 119.99769 * 127.27838 * 22 21 18 25 25 N 1.31616 * 120.00010 * 156.81788 * 24 22 21 26 26 Si 1.86802 * 120.00081 * 336.82185 * 24 22 21 27 27 H 1.48503 * 109.47187 * 95.27050 * 26 24 22 28 28 H 1.48502 * 109.46851 * 215.26796 * 26 24 22 29 29 H 1.48496 * 109.47216 * 335.27243 * 26 24 22 30 30 H 1.08996 * 109.47261 * 187.28369 * 1 2 3 31 31 H 1.09003 * 109.47225 * 307.29048 * 1 2 3 32 32 H 1.09004 * 109.46816 * 67.29004 * 1 2 3 33 33 H 1.08998 * 109.49144 * 306.42082 * 4 2 1 34 34 H 1.08991 * 109.49142 * 66.50225 * 4 2 1 35 35 H 1.08996 * 109.46976 * 289.99624 * 6 5 4 36 36 H 1.08993 * 109.47043 * 49.99828 * 6 5 4 37 37 H 1.08004 * 120.15877 * 0.02815 * 8 7 6 38 38 H 1.09008 * 109.46576 * 90.00368 * 10 9 8 39 39 H 1.08997 * 109.47336 * 209.99877 * 10 9 8 40 40 H 1.09000 * 109.46947 * 330.00748 * 10 9 8 41 41 H 1.08993 * 109.47319 * 0.02562 * 14 13 11 42 42 H 1.09005 * 109.46687 * 120.00202 * 14 13 11 43 43 H 1.08999 * 109.47055 * 239.99618 * 14 13 11 44 44 H 1.08996 * 109.49567 * 176.93343 * 17 5 4 45 45 H 1.09003 * 109.49132 * 56.85376 * 17 5 4 46 46 H 1.09003 * 109.47086 * 303.68439 * 20 18 17 47 47 H 1.08994 * 109.47201 * 63.68566 * 20 18 17 48 48 H 1.09003 * 109.46893 * 183.68388 * 20 18 17 49 49 H 0.96996 * 120.00368 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7302 -1.2450 5 7 3.5055 -0.8625 -1.1621 6 6 4.0569 -1.4023 -2.4122 7 6 5.5599 -1.2953 -2.3858 8 6 6.3131 -2.3407 -1.9824 9 7 7.6766 -2.2268 -1.9650 10 6 8.4941 -3.3612 -1.5279 11 6 8.2735 -1.0827 -2.3454 12 8 9.4865 -1.0028 -2.3218 13 7 7.5469 -0.0247 -2.7510 14 6 8.2211 1.2100 -3.1597 15 6 6.2010 -0.0990 -2.7884 16 8 5.5430 0.8558 -3.1605 17 6 3.9015 -1.6871 -0.0128 18 6 3.4628 -0.9961 1.2827 19 1 4.0176 -0.0662 1.4077 20 6 3.7266 -1.9206 2.4731 21 7 2.0240 -0.7048 1.1927 22 6 1.1670 -1.0802 2.1926 23 1 1.1518 -2.1044 2.5347 24 6 0.3177 -0.1441 2.7666 25 7 -0.7858 -0.5373 3.3665 26 14 0.7409 1.6736 2.6873 27 1 0.0516 2.2922 1.5265 28 1 0.2982 2.3398 3.9385 29 1 2.2092 1.8338 2.5340 30 1 -0.3633 -1.0193 0.1303 31 1 -0.3634 0.6226 0.8176 32 1 -0.3633 0.3968 -0.9480 33 1 1.5924 -1.7204 -1.2990 34 1 1.7811 -0.1603 -2.1359 35 1 3.7688 -2.4485 -2.5145 36 1 3.6670 -0.8338 -3.2565 37 1 5.8418 -3.2628 -1.6759 38 1 8.7379 -3.9858 -2.3874 39 1 9.4139 -2.9927 -1.0740 40 1 7.9385 -3.9493 -0.7974 41 1 9.2997 1.0821 -3.0691 42 1 7.9681 1.4363 -4.1955 43 1 7.8970 2.0301 -2.5190 44 1 4.9844 -1.8113 -0.0101 45 1 3.4232 -2.6640 -0.0840 46 1 3.2153 -2.8703 2.3158 47 1 4.7982 -2.0960 2.5664 48 1 3.3540 -1.4540 3.3850 49 1 -1.3791 0.1167 3.7679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119515324.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:14 Heat of formation + Delta-G solvation = -9.307691 kcal Electronic energy + Delta-G solvation = -31251.976944 eV Core-core repulsion = 27215.526782 eV Total energy + Delta-G solvation = -4036.450162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.39563 -40.42530 -39.94488 -38.47011 -36.74346 -36.29487 -34.51648 -34.00844 -32.82395 -29.92804 -29.40016 -28.20422 -27.53457 -27.38837 -26.03260 -24.69330 -23.86164 -22.37033 -22.09467 -21.04410 -20.34492 -18.52846 -18.39603 -18.21660 -17.89588 -17.14497 -16.57775 -16.47649 -16.37583 -16.11338 -15.84521 -15.81745 -15.33855 -15.06111 -14.82371 -14.62852 -14.48410 -14.15143 -13.99141 -13.90417 -13.62656 -13.37198 -13.32180 -13.13589 -13.00017 -12.82141 -12.52948 -12.46355 -12.19033 -12.11865 -12.01177 -11.93014 -11.84613 -11.67729 -11.46169 -11.32544 -11.21816 -10.89297 -10.45505 -9.49672 -9.09899 -8.33392 -8.15123 -5.65140 -0.01341 0.86014 0.92752 1.30135 1.38502 1.51583 1.94237 2.34152 2.44571 3.06453 3.14275 3.38409 3.42227 3.63816 4.01114 4.16084 4.21251 4.23216 4.27886 4.34091 4.38171 4.41772 4.49306 4.53493 4.54730 4.60572 4.62159 4.66815 4.78693 4.82893 4.86799 4.88313 4.90743 4.92483 4.93802 4.98809 5.16879 5.19693 5.32264 5.35362 5.47856 5.56804 5.65883 6.03041 6.12936 6.25019 6.35161 6.40121 6.43475 6.84560 7.14838 7.68314 8.29540 9.00903 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.003485 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.510157 B = 8032.994763 C = 8446.570761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.164 3.836 3 H 0.008 0.992 4 C 0.067 3.933 5 N -0.553 5.553 6 C 0.136 3.864 7 C -0.272 4.272 8 C 0.203 3.797 9 N -0.528 5.528 10 C 0.071 3.929 11 C 0.686 3.314 12 O -0.568 6.568 13 N -0.564 5.564 14 C 0.078 3.922 15 C 0.547 3.453 16 O -0.543 6.543 17 C 0.062 3.938 18 C 0.157 3.843 19 H 0.008 0.992 20 C -0.121 4.121 21 N -0.609 5.609 22 C -0.244 4.244 23 H 0.045 0.955 24 C 0.024 3.976 25 N -0.932 5.932 26 Si 0.909 3.091 27 H -0.274 1.274 28 H -0.307 1.307 29 H -0.281 1.281 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.224 0.776 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.042 0.958 46 H 0.051 0.949 47 H 0.075 0.925 48 H 0.035 0.965 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.479 -8.818 -14.076 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.026 0.974 4 C -0.062 4.062 5 N -0.277 5.277 6 C 0.008 3.992 7 C -0.282 4.282 8 C 0.078 3.922 9 N -0.246 5.246 10 C -0.068 4.068 11 C 0.389 3.611 12 O -0.444 6.444 13 N -0.307 5.307 14 C -0.063 4.063 15 C 0.345 3.655 16 O -0.420 6.420 17 C -0.067 4.067 18 C 0.052 3.948 19 H 0.025 0.975 20 C -0.179 4.179 21 N -0.336 5.336 22 C -0.373 4.373 23 H 0.062 0.938 24 C -0.174 4.174 25 N -0.575 5.575 26 Si 0.738 3.262 27 H -0.200 1.200 28 H -0.236 1.236 29 H -0.206 1.206 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.240 0.760 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.145 0.855 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.094 0.906 48 H 0.054 0.946 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.996 -7.755 -14.102 24.897 hybrid contribution -0.620 0.998 0.355 1.227 sum 18.377 -6.756 -13.747 23.924 Atomic orbital electron populations 1.21896 0.95168 1.01979 1.00180 1.20725 0.93158 0.93299 0.86985 0.97437 1.22351 0.86897 0.99318 0.97667 1.61732 1.10582 1.51961 1.03457 1.20415 0.87273 0.99589 0.91875 1.20243 0.97840 0.93676 1.16425 1.22786 0.80988 1.00405 0.87981 1.44887 1.07031 1.13768 1.58913 1.22480 0.96390 0.85052 1.02910 1.16086 0.85459 0.80672 0.78843 1.90972 1.11794 1.82323 1.59333 1.46533 1.08591 1.15496 1.60089 1.21966 0.99330 0.83164 1.01878 1.17526 0.80380 0.89742 0.77849 1.90859 1.63798 1.39937 1.47375 1.22481 1.00111 0.94208 0.89860 1.20854 0.84333 0.95224 0.94418 0.97457 1.21612 1.00503 0.98768 0.97031 1.44678 1.02778 1.68457 1.17700 1.18217 1.14319 0.92687 1.12120 0.93761 1.26139 0.96165 0.99565 0.95580 1.69971 1.11512 1.35128 1.40885 0.86532 0.78462 0.85261 0.75906 1.20047 1.23568 1.20598 0.92872 0.94307 0.91664 0.94263 0.90412 0.90677 0.90599 0.75990 0.88783 0.89807 0.85480 0.87673 0.89707 0.90674 0.89505 0.93947 0.92972 0.90573 0.94564 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 7.84 71.98 0.56 -5.31 16 2 C 0.16 7.05 2.46 44.96 0.11 7.16 16 3 H 0.01 0.37 7.45 -2.39 -0.02 0.36 16 4 C 0.07 2.26 4.91 86.38 0.42 2.69 16 5 N -0.55 -16.95 4.62 -899.83 -4.16 -21.11 16 6 C 0.14 3.09 4.88 85.56 0.42 3.51 16 7 C -0.27 -5.66 4.76 -19.78 -0.09 -5.76 16 8 C 0.20 2.45 8.47 83.17 0.70 3.15 16 9 N -0.53 -7.15 3.01 -680.35 -2.05 -9.20 16 10 C 0.07 0.39 10.37 127.77 1.32 1.72 16 11 C 0.69 14.73 8.12 179.18 1.45 16.18 16 12 O -0.57 -14.36 15.10 -4.00 -0.06 -14.42 16 13 N -0.56 -13.55 2.96 -806.44 -2.39 -15.94 16 14 C 0.08 1.61 10.04 127.77 1.28 2.89 16 15 C 0.55 14.96 7.43 85.05 0.63 15.59 16 16 O -0.54 -18.99 16.37 -4.62 -0.08 -19.07 16 17 C 0.06 1.78 4.68 86.39 0.40 2.19 16 18 C 0.16 6.06 3.66 44.96 0.16 6.22 16 19 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 20 C -0.12 -4.21 8.19 71.98 0.59 -3.62 16 21 N -0.61 -28.05 2.26 -650.64 -1.47 -29.53 16 22 C -0.24 -13.03 7.13 84.03 0.60 -12.43 16 23 H 0.04 2.60 7.40 -2.91 -0.02 2.58 16 24 C 0.02 1.36 3.88 84.86 0.33 1.69 16 25 N -0.93 -55.76 13.97 21.65 0.30 -55.46 16 26 Si 0.91 47.16 24.78 68.60 1.70 48.86 16 27 H -0.27 -13.77 6.46 99.48 0.64 -13.13 16 28 H -0.31 -16.07 7.11 99.48 0.71 -15.37 16 29 H -0.28 -14.91 7.11 99.48 0.71 -14.20 16 30 H 0.05 2.45 7.69 -2.39 -0.02 2.43 16 31 H 0.04 1.91 3.38 -2.39 -0.01 1.90 16 32 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 34 H 0.08 2.43 7.99 -2.39 -0.02 2.41 16 35 H 0.08 1.22 8.03 -2.39 -0.02 1.21 16 36 H 0.08 1.94 7.62 -2.39 -0.02 1.92 16 37 H 0.22 0.60 8.06 -2.91 -0.02 0.58 16 38 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 39 H 0.08 0.74 7.37 -2.39 -0.02 0.72 16 40 H 0.13 -0.14 8.03 -2.39 -0.02 -0.16 16 41 H 0.10 1.98 6.86 -2.39 -0.02 1.96 16 42 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.09 1.96 6.00 -2.39 -0.01 1.94 16 45 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.05 1.80 7.76 -2.39 -0.02 1.78 16 47 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.04 1.47 7.52 -2.39 -0.02 1.45 16 49 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -78.48 375.17 1.59 -76.89 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 0.88 Total: 3.09 kcal Atomic # 6 Polarization: 26.97 SS G_CDS: 8.91 Total: 35.88 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -9.76 Total: -131.23 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.14 Total: -33.48 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.70 Total: 48.86 kcal Total: -78.48 1.59 -76.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119515324.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.579 kcal (2) G-P(sol) polarization free energy of solvation -78.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds