Wall clock time and date at job start Tue Mar 31 2020 19:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46495 * 109.47260 * 124.99791 * 3 2 1 5 5 C 1.36742 * 127.13516 * 90.02354 * 4 3 2 6 6 C 1.50701 * 126.34595 * 0.02562 * 5 4 3 7 7 C 1.52993 * 109.47228 * 89.99743 * 6 5 4 8 8 H 1.09000 * 109.47476 * 55.00137 * 7 6 5 9 9 O 1.42893 * 109.47251 * 294.99482 * 7 6 5 10 10 C 1.50705 * 109.46898 * 174.99643 * 7 6 5 11 11 H 1.07995 * 119.99925 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00136 * 179.97438 * 10 7 6 13 13 N 1.31518 * 119.99846 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 120.00047 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47552 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47206 * 120.00653 * 14 12 10 17 17 H 1.48505 * 109.47144 * 240.00551 * 14 12 10 18 18 N 1.30292 * 107.30120 * 179.97438 * 5 4 3 19 19 N 1.28528 * 110.05804 * 0.02562 * 18 5 4 20 20 C 1.31215 * 109.85994 * 359.74165 * 19 18 5 21 21 N 1.38573 * 126.47681 * 180.25714 * 20 19 18 22 22 C 1.44067 * 111.00210 * 236.22394 * 21 20 19 23 23 C 1.54017 * 108.26380 * 219.69086 * 22 21 20 24 24 C 1.46284 * 112.03029 * 280.49523 * 23 22 21 25 25 O 1.44535 * 111.34104 * 59.66086 * 24 23 22 26 26 C 1.39988 * 112.90272 * 280.43676 * 25 24 23 27 27 H 1.09003 * 108.74048 * 333.51099 * 26 25 24 28 28 C 1.52996 * 108.74670 * 215.29244 * 26 25 24 29 29 C 1.48528 * 110.99581 * 4.34802 * 21 20 19 30 30 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 32 32 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47249 * 245.00440 * 3 2 1 34 34 H 1.09006 * 109.47239 * 4.99581 * 3 2 1 35 35 H 1.09001 * 109.46879 * 210.00233 * 6 5 4 36 36 H 1.09003 * 109.46859 * 329.99060 * 6 5 4 37 37 H 0.96706 * 114.00392 * 300.00449 * 9 7 6 38 38 H 0.96995 * 119.99822 * 179.97438 * 13 12 10 39 39 H 1.08995 * 109.70268 * 339.37833 * 22 21 20 40 40 H 1.08997 * 109.70884 * 99.95780 * 22 21 20 41 41 H 1.09003 * 108.97087 * 41.15618 * 23 22 21 42 42 H 1.09004 * 108.96759 * 159.84271 * 23 22 21 43 43 H 1.08998 * 109.10510 * 180.14020 * 24 23 22 44 44 H 1.08999 * 109.10275 * 299.24657 * 24 23 22 45 45 H 1.09001 * 109.47472 * 59.99547 * 28 26 25 46 46 H 1.09004 * 109.47386 * 179.97438 * 28 26 25 47 47 H 1.08997 * 109.47349 * 299.99521 * 28 26 25 48 48 H 1.08997 * 108.99276 * 313.10075 * 29 21 20 49 49 H 1.09001 * 108.98497 * 71.83785 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.2914 0.9010 1.1436 6 6 5.0447 0.3025 -0.0163 7 6 5.7403 1.4159 -0.8018 8 1 6.3700 1.9971 -0.1282 9 8 4.7570 2.2698 -1.3900 10 6 6.5920 0.8087 -1.8867 11 1 6.6326 -0.2641 -2.0044 12 6 7.3184 1.6227 -2.7297 13 7 7.2685 2.9291 -2.5867 14 14 8.3735 0.8700 -4.0749 15 1 8.2574 -0.6096 -4.0255 16 1 7.9106 1.3585 -5.3987 17 1 9.7910 1.2628 -3.8703 18 7 4.7561 1.1049 2.3436 19 7 3.8473 1.6308 3.0849 20 6 2.7466 1.7970 2.3903 21 7 1.5569 2.3396 2.8491 22 6 0.4616 1.4251 2.6503 23 6 -0.7680 2.2355 2.1994 24 6 -1.4363 2.8900 3.3240 25 8 -0.5455 3.7995 4.0083 26 6 0.3314 3.1479 4.8835 27 1 -0.1297 2.2164 5.2121 28 6 0.5600 4.0400 6.1052 29 6 1.6975 2.8262 4.2454 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5400 0.9352 0.0044 32 1 1.8501 -0.9353 -0.0004 33 1 2.6213 1.4027 -0.9314 34 1 1.3586 2.1317 0.0895 35 1 5.7905 -0.3988 0.3579 36 1 4.3480 -0.2227 -0.6698 37 1 4.1599 1.8186 -2.0025 38 1 7.7798 3.5018 -3.1795 39 1 0.7247 0.6983 1.8818 40 1 0.2398 0.9087 3.5842 41 1 -0.4494 2.9952 1.4856 42 1 -1.4740 1.5649 1.7093 43 1 -2.2975 3.4457 2.9529 44 1 -1.7781 2.1304 4.0270 45 1 -0.3916 4.2240 6.6040 46 1 1.2417 3.5431 6.7956 47 1 0.9925 4.9885 5.7867 48 1 2.1950 2.0599 4.8397 49 1 2.3106 3.7275 4.2467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121527283.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:54 Heat of formation + Delta-G solvation = 25.720481 kcal Electronic energy + Delta-G solvation = -30999.200229 eV Core-core repulsion = 26964.269002 eV Total energy + Delta-G solvation = -4034.931227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.62201 -40.00670 -36.95403 -36.49664 -35.63208 -34.01511 -32.75214 -32.19205 -31.63042 -30.42919 -28.02453 -27.13218 -26.67022 -25.50659 -24.82977 -21.97229 -21.84481 -21.43870 -20.62377 -20.17494 -19.64102 -17.59989 -17.16537 -16.81491 -16.47380 -16.05627 -15.85164 -15.23566 -15.04986 -14.68089 -14.57525 -14.38191 -14.07854 -13.74954 -13.52718 -13.47163 -13.26152 -13.03574 -12.77253 -12.65833 -12.35985 -12.18187 -11.82238 -11.66289 -11.52025 -11.33803 -11.17475 -11.10755 -11.02863 -10.88267 -10.82810 -10.74622 -10.14318 -10.09685 -9.87296 -9.80649 -9.69187 -9.46849 -9.09894 -8.63278 -8.39349 -7.72676 -6.05617 -4.25477 1.72204 2.22867 2.63180 3.24554 3.32849 3.34155 3.36744 3.48928 3.73661 4.34608 4.46260 4.47157 4.56262 4.61161 4.69534 4.75884 4.87475 4.96888 5.02347 5.06877 5.13437 5.20691 5.27193 5.32198 5.37976 5.42098 5.45990 5.53976 5.56725 5.60240 5.64639 5.81185 5.83909 5.91768 5.96519 6.12323 6.17254 6.23194 6.23636 6.36270 6.42662 6.70470 6.84421 6.94523 7.06082 7.50027 7.65451 7.77954 8.06991 8.76406 9.22716 9.28225 9.50616 10.98427 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019228 B = 0.003050 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.861168 B = 9176.641509 C = 9803.784485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.174 4.174 3 C 0.134 3.866 4 N -0.470 5.470 5 C 0.218 3.782 6 C -0.062 4.062 7 C 0.237 3.763 8 H 0.065 0.935 9 O -0.560 6.560 10 C -0.574 4.574 11 H 0.060 0.940 12 C 0.080 3.920 13 N -0.855 5.855 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.282 1.282 18 N -0.297 5.297 19 N -0.329 5.329 20 C 0.345 3.655 21 N -0.453 5.453 22 C 0.037 3.963 23 C -0.153 4.153 24 C 0.063 3.937 25 O -0.359 6.359 26 C 0.088 3.912 27 H 0.053 0.947 28 C -0.151 4.151 29 C 0.056 3.944 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.338 0.662 38 H 0.261 0.739 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.205 -3.949 10.151 23.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.193 4.193 3 C 0.011 3.989 4 N -0.164 5.164 5 C -0.050 4.050 6 C -0.103 4.103 7 C 0.178 3.822 8 H 0.082 0.918 9 O -0.363 6.363 10 C -0.611 4.611 11 H 0.078 0.922 12 C -0.127 4.127 13 N -0.491 5.491 14 Si 0.718 3.282 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.208 1.208 18 N -0.135 5.135 19 N -0.174 5.174 20 C -0.012 4.012 21 N -0.176 5.176 22 C -0.091 4.091 23 C -0.191 4.191 24 C -0.013 4.013 25 O -0.277 6.277 26 C 0.029 3.971 27 H 0.071 0.929 28 C -0.208 4.208 29 C -0.071 4.071 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.182 0.818 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.999 -2.683 11.385 23.169 hybrid contribution -0.336 -1.632 -1.867 2.502 sum -20.335 -4.315 9.518 22.863 Atomic orbital electron populations 1.24061 0.95584 1.02707 0.98639 1.23294 0.96420 0.98816 1.00745 1.21020 0.92130 0.96211 0.89517 1.46003 1.12055 1.48833 1.09535 1.25214 0.81517 1.00508 0.97765 1.21188 0.97886 1.00692 0.90496 1.19431 0.85549 0.86050 0.91160 0.91757 1.86687 1.47178 1.40405 1.62042 1.21597 1.29521 0.93340 1.16683 0.92216 1.25045 0.95627 0.94679 0.97302 1.70096 1.39101 1.02833 1.37025 0.86583 0.80376 0.79503 0.81712 1.19630 1.20928 1.20807 1.73956 1.22290 1.16585 1.00671 1.74452 0.97830 1.20037 1.25038 1.22377 0.94602 1.00445 0.83771 1.57135 0.99275 1.37452 1.23722 1.22438 0.90301 0.93994 1.02319 1.21298 0.97027 1.00560 1.00200 1.21628 0.92433 0.93188 0.94077 1.87844 1.48750 1.32778 1.58364 1.21887 0.89448 0.95776 0.90009 0.92874 1.21909 1.02464 1.00615 0.95845 1.23176 0.97868 1.01682 0.84358 0.87603 0.87644 0.86435 0.86539 0.88357 0.88570 0.91172 0.81838 0.92920 0.88490 0.93263 0.89683 0.90079 0.89021 0.93313 0.91739 0.91055 0.91266 0.91402 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 12.06 29.01 0.35 -0.96 16 2 C -0.17 -1.78 8.36 -36.03 -0.30 -2.08 16 3 C 0.13 1.76 5.55 -5.20 -0.03 1.73 16 4 N -0.47 -8.01 2.72 -115.37 -0.31 -8.33 16 5 C 0.22 4.37 7.09 -154.01 -1.09 3.28 16 6 C -0.06 -1.24 5.05 -27.89 -0.14 -1.38 16 7 C 0.24 5.82 2.81 -27.88 -0.08 5.74 16 8 H 0.06 1.86 8.14 -51.93 -0.42 1.43 16 9 O -0.56 -13.54 11.65 -35.23 -0.41 -13.95 16 10 C -0.57 -15.08 8.76 -34.44 -0.30 -15.38 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 13 N -0.86 -24.98 12.84 55.43 0.71 -24.27 16 14 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 N -0.30 -6.61 12.18 32.99 0.40 -6.20 16 19 N -0.33 -6.79 11.05 30.31 0.34 -6.45 16 20 C 0.34 6.08 7.08 -318.88 -2.26 3.82 16 21 N -0.45 -6.38 4.19 -174.04 -0.73 -7.11 16 22 C 0.04 0.40 4.67 -4.81 -0.02 0.38 16 23 C -0.15 -1.26 4.58 -29.39 -0.13 -1.39 16 24 C 0.06 0.50 6.21 33.96 0.21 0.71 16 25 O -0.36 -3.94 10.10 -32.90 -0.33 -4.27 16 26 C 0.09 0.89 2.58 -26.12 -0.07 0.82 16 27 H 0.05 0.47 6.57 -51.93 -0.34 0.13 16 28 C -0.15 -1.27 9.37 37.16 0.35 -0.92 16 29 C 0.06 0.72 4.83 -2.31 -0.01 0.71 16 30 H 0.11 0.65 8.06 -52.48 -0.42 0.22 16 31 H 0.11 0.70 6.00 -52.49 -0.32 0.39 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.12 1.61 5.50 -51.93 -0.29 1.33 16 34 H 0.10 1.21 7.59 -51.93 -0.39 0.81 16 35 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.07 1.21 7.92 -51.93 -0.41 0.80 16 37 H 0.34 6.93 7.67 45.56 0.35 7.28 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.10 1.06 2.46 -51.93 -0.13 0.93 16 40 H 0.05 0.50 6.89 -51.93 -0.36 0.15 16 41 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 42 H 0.08 0.47 7.09 -51.93 -0.37 0.10 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.32 7.47 -51.93 -0.39 -0.06 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.91 7.56 -51.93 -0.39 0.52 16 49 H 0.09 1.29 7.98 -51.93 -0.41 0.88 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -33.91 379.83 -10.05 -43.96 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.79 Total: 8.09 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.63 Total: -2.84 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.41 Total: -52.36 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.74 Total: -18.22 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.91 -10.05 -43.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121527283.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.679 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds