Wall clock time and date at job start Tue Mar 31 2020 19:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46495 * 109.47260 * 124.99791 * 3 2 1 5 5 C 1.36742 * 127.13516 * 90.02354 * 4 3 2 6 6 C 1.50701 * 126.34595 * 0.02562 * 5 4 3 7 7 C 1.52993 * 109.47228 * 89.99743 * 6 5 4 8 8 H 1.09000 * 109.47476 * 55.00137 * 7 6 5 9 9 O 1.42893 * 109.47251 * 294.99482 * 7 6 5 10 10 C 1.50705 * 109.46898 * 174.99643 * 7 6 5 11 11 H 1.07995 * 119.99925 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00136 * 179.97438 * 10 7 6 13 13 N 1.31518 * 119.99846 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 120.00047 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47552 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47206 * 120.00653 * 14 12 10 17 17 H 1.48505 * 109.47144 * 240.00551 * 14 12 10 18 18 N 1.30292 * 107.30120 * 179.97438 * 5 4 3 19 19 N 1.28528 * 110.05804 * 0.02562 * 18 5 4 20 20 C 1.31215 * 109.85994 * 359.74165 * 19 18 5 21 21 N 1.38573 * 126.47681 * 180.25714 * 20 19 18 22 22 C 1.44067 * 111.00210 * 236.22394 * 21 20 19 23 23 C 1.54017 * 108.26380 * 219.69086 * 22 21 20 24 24 C 1.46284 * 112.03029 * 280.49523 * 23 22 21 25 25 O 1.44535 * 111.34104 * 59.66086 * 24 23 22 26 26 C 1.39988 * 112.90272 * 280.43676 * 25 24 23 27 27 H 1.09003 * 108.74048 * 333.51099 * 26 25 24 28 28 C 1.52996 * 108.74670 * 215.29244 * 26 25 24 29 29 C 1.48528 * 110.99581 * 4.34802 * 21 20 19 30 30 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 32 32 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47249 * 245.00440 * 3 2 1 34 34 H 1.09006 * 109.47239 * 4.99581 * 3 2 1 35 35 H 1.09001 * 109.46879 * 210.00233 * 6 5 4 36 36 H 1.09003 * 109.46859 * 329.99060 * 6 5 4 37 37 H 0.96706 * 114.00392 * 300.00449 * 9 7 6 38 38 H 0.96995 * 119.99822 * 179.97438 * 13 12 10 39 39 H 1.08995 * 109.70268 * 339.37833 * 22 21 20 40 40 H 1.08997 * 109.70884 * 99.95780 * 22 21 20 41 41 H 1.09003 * 108.97087 * 41.15618 * 23 22 21 42 42 H 1.09004 * 108.96759 * 159.84271 * 23 22 21 43 43 H 1.08998 * 109.10510 * 180.14020 * 24 23 22 44 44 H 1.08999 * 109.10275 * 299.24657 * 24 23 22 45 45 H 1.09001 * 109.47472 * 59.99547 * 28 26 25 46 46 H 1.09004 * 109.47386 * 179.97438 * 28 26 25 47 47 H 1.08997 * 109.47349 * 299.99521 * 28 26 25 48 48 H 1.08997 * 108.99276 * 313.10075 * 29 21 20 49 49 H 1.09001 * 108.98497 * 71.83785 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.2914 0.9010 1.1436 6 6 5.0447 0.3025 -0.0163 7 6 5.7403 1.4159 -0.8018 8 1 6.3700 1.9971 -0.1282 9 8 4.7570 2.2698 -1.3900 10 6 6.5920 0.8087 -1.8867 11 1 6.6326 -0.2641 -2.0044 12 6 7.3184 1.6227 -2.7297 13 7 7.2685 2.9291 -2.5867 14 14 8.3735 0.8700 -4.0749 15 1 8.2574 -0.6096 -4.0255 16 1 7.9106 1.3585 -5.3987 17 1 9.7910 1.2628 -3.8703 18 7 4.7561 1.1049 2.3436 19 7 3.8473 1.6308 3.0849 20 6 2.7466 1.7970 2.3903 21 7 1.5569 2.3396 2.8491 22 6 0.4616 1.4251 2.6503 23 6 -0.7680 2.2355 2.1994 24 6 -1.4363 2.8900 3.3240 25 8 -0.5455 3.7995 4.0083 26 6 0.3314 3.1479 4.8835 27 1 -0.1297 2.2164 5.2121 28 6 0.5600 4.0400 6.1052 29 6 1.6975 2.8262 4.2454 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5400 0.9352 0.0044 32 1 1.8501 -0.9353 -0.0004 33 1 2.6213 1.4027 -0.9314 34 1 1.3586 2.1317 0.0895 35 1 5.7905 -0.3988 0.3579 36 1 4.3480 -0.2227 -0.6698 37 1 4.1599 1.8186 -2.0025 38 1 7.7798 3.5018 -3.1795 39 1 0.7247 0.6983 1.8818 40 1 0.2398 0.9087 3.5842 41 1 -0.4494 2.9952 1.4856 42 1 -1.4740 1.5649 1.7093 43 1 -2.2975 3.4457 2.9529 44 1 -1.7781 2.1304 4.0270 45 1 -0.3916 4.2240 6.6040 46 1 1.2417 3.5431 6.7956 47 1 0.9925 4.9885 5.7867 48 1 2.1950 2.0599 4.8397 49 1 2.3106 3.7275 4.2467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121527283.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:53 Heat of formation + Delta-G solvation = 3.259217 kcal Electronic energy + Delta-G solvation = -31000.174223 eV Core-core repulsion = 26964.269002 eV Total energy + Delta-G solvation = -4035.905220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.03509 -40.87380 -38.20633 -37.95464 -36.87123 -34.78872 -34.28115 -33.83261 -33.07161 -31.48797 -29.57994 -28.05807 -27.82164 -27.11120 -25.91265 -23.64725 -22.73063 -22.47033 -21.83311 -21.27654 -20.76011 -19.21490 -18.54431 -17.78579 -17.43935 -17.36766 -16.78040 -16.69743 -16.45964 -16.13785 -15.84715 -15.54915 -15.42493 -15.03803 -14.80148 -14.47555 -14.40822 -14.22337 -13.95208 -13.52887 -13.28569 -13.25345 -13.00376 -12.91070 -12.83384 -12.67008 -12.59634 -12.49059 -12.34707 -12.28006 -12.00156 -11.90578 -11.53453 -11.43055 -11.28096 -11.07856 -10.76533 -10.72579 -10.64062 -10.34138 -10.21108 -9.14648 -8.13590 -6.40436 0.81789 0.89771 1.41944 1.44121 1.51502 1.56044 1.84656 2.40040 2.56613 2.85645 3.12784 3.42433 3.59167 3.70094 3.71279 3.77836 3.81459 3.92610 4.01739 4.11366 4.18759 4.26554 4.32259 4.38089 4.40271 4.51652 4.54175 4.59590 4.60325 4.69311 4.78205 4.83710 4.88363 4.90764 4.92957 4.97344 5.04028 5.10883 5.23591 5.29025 5.50412 5.54407 5.59864 5.63664 5.69978 5.81454 6.01668 6.22355 6.34906 6.71719 7.31736 7.49547 7.78974 8.91249 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019228 B = 0.003050 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.861168 B = 9176.641509 C = 9803.784485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.201 4.201 3 C 0.131 3.869 4 N -0.464 5.464 5 C 0.204 3.796 6 C -0.044 4.044 7 C 0.243 3.757 8 H 0.008 0.992 9 O -0.573 6.573 10 C -0.580 4.580 11 H 0.072 0.928 12 C 0.024 3.976 13 N -0.902 5.902 14 Si 0.964 3.036 15 H -0.257 1.257 16 H -0.279 1.279 17 H -0.286 1.286 18 N -0.337 5.337 19 N -0.367 5.367 20 C 0.355 3.645 21 N -0.453 5.453 22 C 0.030 3.970 23 C -0.145 4.145 24 C 0.054 3.946 25 O -0.381 6.381 26 C 0.096 3.904 27 H 0.073 0.927 28 C -0.149 4.149 29 C 0.054 3.946 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.355 0.645 38 H 0.260 0.740 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.637 -5.708 9.435 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.220 4.220 3 C 0.010 3.990 4 N -0.158 5.158 5 C -0.065 4.065 6 C -0.084 4.084 7 C 0.185 3.815 8 H 0.026 0.974 9 O -0.378 6.378 10 C -0.618 4.618 11 H 0.090 0.910 12 C -0.178 4.178 13 N -0.539 5.539 14 Si 0.788 3.212 15 H -0.181 1.181 16 H -0.204 1.204 17 H -0.212 1.212 18 N -0.175 5.175 19 N -0.212 5.212 20 C -0.003 4.003 21 N -0.177 5.177 22 C -0.096 4.096 23 C -0.183 4.183 24 C -0.022 4.022 25 O -0.300 6.300 26 C 0.037 3.963 27 H 0.091 0.909 28 C -0.206 4.206 29 C -0.072 4.072 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.201 0.799 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.476 -4.467 10.656 26.166 hybrid contribution 0.565 -1.019 -1.610 1.987 sum -22.911 -5.486 9.046 25.236 Atomic orbital electron populations 1.24373 0.94471 1.04539 0.93941 1.23027 0.97213 0.96853 1.04915 1.21256 0.91645 0.98570 0.87563 1.46170 1.11558 1.47851 1.10243 1.25076 0.82887 1.01329 0.97249 1.20859 0.98198 0.98896 0.90417 1.19072 0.85691 0.86260 0.90499 0.97399 1.86609 1.47386 1.41090 1.62740 1.22002 1.29287 0.93942 1.16536 0.90995 1.25947 0.97011 0.94954 0.99890 1.70254 1.40650 1.04517 1.38440 0.85448 0.77962 0.79261 0.78509 1.18074 1.20422 1.21171 1.73833 1.23823 1.17861 1.01999 1.74338 0.98900 1.21966 1.25982 1.22837 0.95119 0.98479 0.83829 1.57390 0.98489 1.37671 1.24165 1.22673 0.89893 0.94046 1.03003 1.21292 0.96315 1.00477 1.00183 1.21900 0.92346 0.93665 0.94252 1.87835 1.49091 1.34294 1.58751 1.21852 0.87711 0.96928 0.89853 0.90895 1.21914 1.03431 0.99780 0.95493 1.23257 0.99834 1.00176 0.83941 0.85084 0.86238 0.86907 0.87666 0.87538 0.88778 0.88124 0.79920 0.93081 0.88423 0.92267 0.91243 0.86514 0.87133 0.91247 0.90112 0.90274 0.92561 0.92346 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 12.06 67.78 0.82 -0.68 16 2 C -0.20 -3.66 8.36 25.64 0.21 -3.44 16 3 C 0.13 3.33 5.55 85.63 0.48 3.80 16 4 N -0.46 -16.04 2.72 -518.92 -1.41 -17.45 16 5 C 0.20 8.48 7.09 137.64 0.98 9.46 16 6 C -0.04 -1.77 5.05 29.85 0.15 -1.62 16 7 C 0.24 12.41 2.81 29.85 0.08 12.49 16 8 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 9 O -0.57 -28.49 11.65 -148.98 -1.74 -30.23 16 10 C -0.58 -30.77 8.76 25.60 0.22 -30.55 16 11 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 12 C 0.02 1.34 5.40 84.65 0.46 1.80 16 13 N -0.90 -54.16 12.84 21.45 0.28 -53.88 16 14 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 18 N -0.34 -15.79 12.18 -49.54 -0.60 -16.40 16 19 N -0.37 -15.89 11.05 -58.01 -0.64 -16.54 16 20 C 0.35 12.79 7.08 260.12 1.84 14.63 16 21 N -0.45 -12.60 4.19 -704.53 -2.95 -15.56 16 22 C 0.03 0.58 4.67 87.18 0.41 0.98 16 23 C -0.14 -1.86 4.58 28.87 0.13 -1.73 16 24 C 0.05 0.66 6.21 69.91 0.43 1.09 16 25 O -0.38 -7.56 10.10 -140.62 -1.42 -8.98 16 26 C 0.10 1.79 2.58 30.99 0.08 1.87 16 27 H 0.07 1.08 6.57 -2.39 -0.02 1.06 16 28 C -0.15 -2.35 9.37 71.98 0.67 -1.67 16 29 C 0.05 1.43 4.83 86.38 0.42 1.84 16 30 H 0.13 0.89 8.06 -2.91 -0.02 0.87 16 31 H 0.12 1.00 6.00 -2.91 -0.02 0.99 16 32 H 0.11 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.11 2.87 5.50 -2.39 -0.01 2.86 16 34 H 0.11 2.47 7.59 -2.38 -0.02 2.45 16 35 H 0.09 3.81 8.14 -2.39 -0.02 3.79 16 36 H 0.10 3.40 7.92 -2.39 -0.02 3.38 16 37 H 0.36 14.69 7.67 -74.05 -0.57 14.12 16 38 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.10 1.87 2.46 -2.39 -0.01 1.87 16 40 H 0.06 1.04 6.89 -2.39 -0.02 1.02 16 41 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 42 H 0.12 0.70 7.09 -2.39 -0.02 0.68 16 43 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 0.60 7.47 -2.39 -0.02 0.58 16 45 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.06 1.63 7.56 -2.39 -0.02 1.61 16 49 H 0.06 1.99 7.98 -2.39 -0.02 1.97 16 Total: -1.00 -78.03 379.83 1.32 -76.71 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.40 Total: 29.42 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 7.39 Total: 8.27 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -5.33 Total: -119.82 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -3.16 Total: -39.21 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -78.03 1.32 -76.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121527283.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.970 kcal (2) G-P(sol) polarization free energy of solvation -78.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds