Wall clock time and date at job start Tue Mar 31 2020 19:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 119.99878 * 2 1 4 4 N 1.46501 * 109.46832 * 121.31888 * 3 2 1 5 5 C 1.36743 * 127.13723 * 85.86563 * 4 3 2 6 6 C 1.50700 * 126.34491 * 359.96322 * 5 4 3 7 7 C 1.53003 * 109.46667 * 96.17202 * 6 5 4 8 8 H 1.08994 * 109.47670 * 55.41066 * 7 6 5 9 9 O 1.42895 * 109.47059 * 295.40792 * 7 6 5 10 10 C 1.50706 * 109.46903 * 175.41460 * 7 6 5 11 11 H 1.07999 * 119.99734 * 359.97438 * 10 7 6 12 12 C 1.37876 * 119.99729 * 179.97438 * 10 7 6 13 13 N 1.31508 * 120.00251 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99630 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.47287 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47226 * 119.99922 * 14 12 10 17 17 H 1.48500 * 109.46969 * 239.99782 * 14 12 10 18 18 N 1.30296 * 107.30608 * 179.97438 * 5 4 3 19 19 N 1.28530 * 110.05399 * 0.02562 * 18 5 4 20 20 C 1.31212 * 109.86137 * 0.02562 * 19 18 5 21 21 N 1.38577 * 126.47552 * 180.02562 * 20 19 18 22 22 C 1.40462 * 110.99974 * 259.64057 * 21 20 19 23 23 C 1.54392 * 111.44953 * 187.82420 * 22 21 20 24 24 C 1.50723 * 109.13542 * 284.56479 * 23 22 21 25 25 O 1.44220 * 112.84631 * 91.52847 * 24 23 22 26 26 C 1.43932 * 116.11586 * 318.68949 * 25 24 23 27 27 H 1.09000 * 109.00137 * 79.86737 * 26 25 24 28 28 C 1.53000 * 109.00052 * 198.62799 * 26 25 24 29 29 C 1.47602 * 110.99950 * 28.08693 * 21 20 19 30 30 H 1.08004 * 119.99897 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00333 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.00319 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.46778 * 1.32776 * 3 2 1 34 34 H 1.08996 * 109.47611 * 241.31621 * 3 2 1 35 35 H 1.08995 * 109.46770 * 216.16538 * 6 5 4 36 36 H 1.08992 * 109.47269 * 336.16901 * 6 5 4 37 37 H 0.96699 * 114.00514 * 300.76562 * 9 7 6 38 38 H 0.97003 * 120.00445 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.08327 * 308.32965 * 22 21 20 40 40 H 1.08997 * 109.08509 * 67.31805 * 22 21 20 41 41 H 1.08999 * 109.52818 * 44.46468 * 23 22 21 42 42 H 1.09009 * 109.52273 * 164.60146 * 23 22 21 43 43 H 1.09004 * 108.80876 * 212.39865 * 24 23 22 44 44 H 1.09000 * 108.80786 * 330.66052 * 24 23 22 45 45 H 1.09002 * 109.47749 * 59.99867 * 28 26 25 46 46 H 1.08998 * 109.47582 * 179.97438 * 28 26 25 47 47 H 1.08999 * 109.47293 * 300.00265 * 28 26 25 48 48 H 1.08996 * 109.63904 * 272.67752 * 29 21 20 49 49 H 1.08994 * 109.64066 * 33.30305 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9293 1.3690 1.1800 5 6 4.1964 0.8697 1.3021 6 6 4.9756 0.1407 0.2379 7 6 5.8948 1.1264 -0.4863 8 1 6.5307 1.6315 0.2406 9 8 5.1040 2.0932 -1.1805 10 6 6.7549 0.3792 -1.4728 11 1 6.6560 -0.6916 -1.5729 12 6 7.6679 1.0627 -2.2476 13 7 7.7878 2.3667 -2.1261 14 14 8.7344 0.1364 -3.4699 15 1 8.4084 -1.3113 -3.4138 16 1 8.4774 0.6495 -4.8394 17 1 10.1658 0.3347 -3.1276 18 7 4.6052 1.1407 2.5093 19 7 3.6894 1.7720 3.1533 20 6 2.6385 1.9385 2.3855 21 7 1.4571 2.5743 2.7325 22 6 0.4600 1.6404 3.0593 23 6 -0.9101 2.3237 3.2584 24 6 -0.9209 3.0306 4.5895 25 8 -0.4935 4.4049 4.4971 26 6 0.6300 4.6625 3.6351 27 1 0.2846 4.6936 2.6017 28 6 1.2345 6.0206 3.9970 29 6 1.6931 3.6018 3.7655 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3553 2.1335 0.0238 34 1 2.6723 1.3733 -0.9015 35 1 5.5755 -0.6433 0.6998 36 1 4.2844 -0.3045 -0.4777 37 1 4.5041 1.7128 -1.8366 38 1 8.4299 2.8476 -2.6714 39 1 0.3799 0.9087 2.2554 40 1 0.7397 1.1279 3.9797 41 1 -1.0757 3.0473 2.4602 42 1 -1.6987 1.5714 3.2377 43 1 -1.9329 3.0037 4.9935 44 1 -0.2576 2.5015 5.2737 45 1 1.5641 6.0065 5.0359 46 1 2.0869 6.2234 3.3486 47 1 0.4835 6.7995 3.8647 48 1 1.6372 3.1468 4.7544 49 1 2.6764 4.0489 3.6197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121527284.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:59 Heat of formation + Delta-G solvation = 18.224037 kcal Electronic energy + Delta-G solvation = -30812.510649 eV Core-core repulsion = 26777.254352 eV Total energy + Delta-G solvation = -4035.256297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.69873 -40.05319 -36.77501 -36.43397 -35.73016 -33.77560 -32.71260 -32.20750 -31.71342 -30.40906 -27.96789 -27.43479 -26.72109 -25.47590 -24.79424 -22.30490 -21.92254 -20.75301 -20.57844 -20.38551 -19.59891 -17.73165 -17.29649 -16.97988 -16.30178 -16.25938 -15.76083 -15.17986 -15.11367 -14.80223 -14.64601 -14.43544 -13.79338 -13.71808 -13.54862 -13.42423 -13.29712 -13.19250 -12.69462 -12.61711 -12.40529 -11.97720 -11.73500 -11.69711 -11.50347 -11.41973 -11.28261 -11.20052 -11.09996 -10.92863 -10.87626 -10.77030 -10.22011 -10.14261 -9.86261 -9.77650 -9.70315 -9.47466 -9.08427 -8.64681 -8.46679 -7.97924 -6.07153 -4.27023 1.74473 2.11922 2.60435 3.23474 3.26686 3.32390 3.34965 3.46082 3.66229 4.32948 4.34270 4.49238 4.56487 4.65897 4.72057 4.81567 4.89964 4.97866 4.99316 5.05050 5.19714 5.22077 5.28561 5.32032 5.35920 5.43734 5.47027 5.51685 5.56603 5.58084 5.64270 5.75278 5.85090 5.95346 6.04840 6.09188 6.18108 6.21374 6.26104 6.32556 6.42603 6.65560 6.70920 6.87417 7.07938 7.42628 7.63601 7.76297 8.05358 8.74664 9.17002 9.22546 9.49263 10.96953 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018011 B = 0.003052 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.252130 B = 9173.482747 C = 9891.154781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.174 4.174 3 C 0.138 3.862 4 N -0.461 5.461 5 C 0.224 3.776 6 C -0.064 4.064 7 C 0.238 3.762 8 H 0.066 0.934 9 O -0.561 6.561 10 C -0.574 4.574 11 H 0.059 0.941 12 C 0.081 3.919 13 N -0.855 5.855 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.282 1.282 18 N -0.297 5.297 19 N -0.318 5.318 20 C 0.333 3.667 21 N -0.466 5.466 22 C 0.062 3.938 23 C -0.151 4.151 24 C 0.060 3.940 25 O -0.389 6.389 26 C 0.089 3.911 27 H 0.073 0.927 28 C -0.146 4.146 29 C 0.051 3.949 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.338 0.662 38 H 0.261 0.739 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.666 -0.429 7.553 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C 0.015 3.985 4 N -0.154 5.154 5 C -0.043 4.043 6 C -0.104 4.104 7 C 0.179 3.821 8 H 0.083 0.917 9 O -0.363 6.363 10 C -0.612 4.612 11 H 0.078 0.922 12 C -0.126 4.126 13 N -0.491 5.491 14 Si 0.718 3.282 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.208 1.208 18 N -0.136 5.136 19 N -0.162 5.162 20 C -0.023 4.023 21 N -0.190 5.190 22 C -0.067 4.067 23 C -0.189 4.189 24 C -0.017 4.017 25 O -0.310 6.310 26 C 0.031 3.969 27 H 0.091 0.909 28 C -0.204 4.204 29 C -0.076 4.076 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.182 0.818 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.608 0.606 8.854 21.522 hybrid contribution -0.138 -1.624 -1.777 2.411 sum -19.746 -1.017 7.076 21.000 Atomic orbital electron populations 1.23945 0.95533 1.02394 0.98724 1.23248 0.96392 0.98540 1.01110 1.20944 0.93520 0.96623 0.87405 1.46136 1.13858 1.44251 1.11184 1.25293 0.82609 0.99479 0.96913 1.21229 0.97488 0.99236 0.92455 1.19430 0.86555 0.85378 0.90729 0.91658 1.86674 1.56806 1.37759 1.55090 1.21595 1.22134 0.94237 1.23222 0.92234 1.25036 0.96166 0.94672 0.96734 1.70089 1.33821 1.06647 1.38501 0.86585 0.80477 0.80127 0.81007 1.19626 1.20909 1.20802 1.74013 1.21493 1.14862 1.03214 1.74507 0.99124 1.17503 1.25069 1.22060 0.94599 1.00918 0.84750 1.55714 1.03120 1.15581 1.44587 1.21397 0.90529 0.93610 1.01130 1.22081 0.96391 1.01163 0.99258 1.22350 1.00169 0.82901 0.96239 1.88278 1.48822 1.25814 1.68037 1.21952 0.85736 0.94452 0.94716 0.90870 1.21842 1.00889 0.94936 1.02705 1.22485 1.00995 0.91442 0.92629 0.87808 0.88020 0.86553 0.88177 0.87089 0.88586 0.91082 0.81838 0.92913 0.89841 0.94500 0.89534 0.89411 0.89267 0.93279 0.91798 0.90675 0.91623 0.91767 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 12.78 29.02 0.37 -0.97 16 2 C -0.17 -1.79 9.15 -36.02 -0.33 -2.11 16 3 C 0.14 1.72 6.05 -5.19 -0.03 1.69 16 4 N -0.46 -7.52 2.79 -115.36 -0.32 -7.84 16 5 C 0.22 4.37 7.08 -154.01 -1.09 3.28 16 6 C -0.06 -1.24 5.17 -27.88 -0.14 -1.38 16 7 C 0.24 5.77 2.82 -27.88 -0.08 5.69 16 8 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 9 O -0.56 -13.47 12.13 -35.23 -0.43 -13.90 16 10 C -0.57 -14.96 8.77 -34.44 -0.30 -15.26 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 13 N -0.86 -24.80 12.84 55.43 0.71 -24.09 16 14 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 N -0.30 -6.45 12.18 32.99 0.40 -6.05 16 19 N -0.32 -6.34 11.44 30.31 0.35 -6.00 16 20 C 0.33 5.56 6.57 -318.88 -2.09 3.46 16 21 N -0.47 -6.05 4.03 -179.24 -0.72 -6.78 16 22 C 0.06 0.66 4.91 -6.43 -0.03 0.63 16 23 C -0.15 -1.20 5.67 -27.14 -0.15 -1.35 16 24 C 0.06 0.52 6.26 36.02 0.23 0.75 16 25 O -0.39 -4.28 10.54 -35.23 -0.37 -4.65 16 26 C 0.09 0.96 2.85 -27.86 -0.08 0.88 16 27 H 0.07 0.80 7.26 -51.93 -0.38 0.43 16 28 C -0.15 -1.40 9.32 37.16 0.35 -1.05 16 29 C 0.05 0.64 4.45 -4.57 -0.02 0.62 16 30 H 0.10 0.69 8.06 -52.48 -0.42 0.27 16 31 H 0.10 0.72 7.83 -52.49 -0.41 0.30 16 32 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 33 H 0.10 1.14 7.77 -51.93 -0.40 0.73 16 34 H 0.11 1.44 6.49 -51.93 -0.34 1.10 16 35 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 36 H 0.07 1.20 7.73 -51.93 -0.40 0.79 16 37 H 0.34 6.90 7.99 45.56 0.36 7.26 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.08 0.88 5.33 -51.93 -0.28 0.60 16 40 H 0.04 0.44 7.63 -51.93 -0.40 0.04 16 41 H 0.09 0.73 7.25 -51.93 -0.38 0.35 16 42 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.45 6.61 -51.93 -0.34 0.11 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.82 6.85 -51.93 -0.36 0.47 16 49 H 0.10 1.44 7.14 -51.93 -0.37 1.07 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -32.78 388.99 -10.08 -42.86 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.03 Total: 8.12 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -3.51 Total: -3.05 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.41 Total: -50.75 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.80 Total: -18.55 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.78 -10.08 -42.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121527284.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.086 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds