Wall clock time and date at job start Tue Mar 31 2020 19:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 119.99878 * 2 1 4 4 N 1.46501 * 109.46832 * 121.31888 * 3 2 1 5 5 C 1.36743 * 127.13723 * 85.86563 * 4 3 2 6 6 C 1.50700 * 126.34491 * 359.96322 * 5 4 3 7 7 C 1.53003 * 109.46667 * 96.17202 * 6 5 4 8 8 H 1.08994 * 109.47670 * 55.41066 * 7 6 5 9 9 O 1.42895 * 109.47059 * 295.40792 * 7 6 5 10 10 C 1.50706 * 109.46903 * 175.41460 * 7 6 5 11 11 H 1.07999 * 119.99734 * 359.97438 * 10 7 6 12 12 C 1.37876 * 119.99729 * 179.97438 * 10 7 6 13 13 N 1.31508 * 120.00251 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99630 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.47287 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47226 * 119.99922 * 14 12 10 17 17 H 1.48500 * 109.46969 * 239.99782 * 14 12 10 18 18 N 1.30296 * 107.30608 * 179.97438 * 5 4 3 19 19 N 1.28530 * 110.05399 * 0.02562 * 18 5 4 20 20 C 1.31212 * 109.86137 * 0.02562 * 19 18 5 21 21 N 1.38577 * 126.47552 * 180.02562 * 20 19 18 22 22 C 1.40462 * 110.99974 * 259.64057 * 21 20 19 23 23 C 1.54392 * 111.44953 * 187.82420 * 22 21 20 24 24 C 1.50723 * 109.13542 * 284.56479 * 23 22 21 25 25 O 1.44220 * 112.84631 * 91.52847 * 24 23 22 26 26 C 1.43932 * 116.11586 * 318.68949 * 25 24 23 27 27 H 1.09000 * 109.00137 * 79.86737 * 26 25 24 28 28 C 1.53000 * 109.00052 * 198.62799 * 26 25 24 29 29 C 1.47602 * 110.99950 * 28.08693 * 21 20 19 30 30 H 1.08004 * 119.99897 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00333 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.00319 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.46778 * 1.32776 * 3 2 1 34 34 H 1.08996 * 109.47611 * 241.31621 * 3 2 1 35 35 H 1.08995 * 109.46770 * 216.16538 * 6 5 4 36 36 H 1.08992 * 109.47269 * 336.16901 * 6 5 4 37 37 H 0.96699 * 114.00514 * 300.76562 * 9 7 6 38 38 H 0.97003 * 120.00445 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.08327 * 308.32965 * 22 21 20 40 40 H 1.08997 * 109.08509 * 67.31805 * 22 21 20 41 41 H 1.08999 * 109.52818 * 44.46468 * 23 22 21 42 42 H 1.09009 * 109.52273 * 164.60146 * 23 22 21 43 43 H 1.09004 * 108.80876 * 212.39865 * 24 23 22 44 44 H 1.09000 * 108.80786 * 330.66052 * 24 23 22 45 45 H 1.09002 * 109.47749 * 59.99867 * 28 26 25 46 46 H 1.08998 * 109.47582 * 179.97438 * 28 26 25 47 47 H 1.08999 * 109.47293 * 300.00265 * 28 26 25 48 48 H 1.08996 * 109.63904 * 272.67752 * 29 21 20 49 49 H 1.08994 * 109.64066 * 33.30305 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9293 1.3690 1.1800 5 6 4.1964 0.8697 1.3021 6 6 4.9756 0.1407 0.2379 7 6 5.8948 1.1264 -0.4863 8 1 6.5307 1.6315 0.2406 9 8 5.1040 2.0932 -1.1805 10 6 6.7549 0.3792 -1.4728 11 1 6.6560 -0.6916 -1.5729 12 6 7.6679 1.0627 -2.2476 13 7 7.7878 2.3667 -2.1261 14 14 8.7344 0.1364 -3.4699 15 1 8.4084 -1.3113 -3.4138 16 1 8.4774 0.6495 -4.8394 17 1 10.1658 0.3347 -3.1276 18 7 4.6052 1.1407 2.5093 19 7 3.6894 1.7720 3.1533 20 6 2.6385 1.9385 2.3855 21 7 1.4571 2.5743 2.7325 22 6 0.4600 1.6404 3.0593 23 6 -0.9101 2.3237 3.2584 24 6 -0.9209 3.0306 4.5895 25 8 -0.4935 4.4049 4.4971 26 6 0.6300 4.6625 3.6351 27 1 0.2846 4.6936 2.6017 28 6 1.2345 6.0206 3.9970 29 6 1.6931 3.6018 3.7655 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3553 2.1335 0.0238 34 1 2.6723 1.3733 -0.9015 35 1 5.5755 -0.6433 0.6998 36 1 4.2844 -0.3045 -0.4777 37 1 4.5041 1.7128 -1.8366 38 1 8.4299 2.8476 -2.6714 39 1 0.3799 0.9087 2.2554 40 1 0.7397 1.1279 3.9797 41 1 -1.0757 3.0473 2.4602 42 1 -1.6987 1.5714 3.2377 43 1 -1.9329 3.0037 4.9935 44 1 -0.2576 2.5015 5.2737 45 1 1.5641 6.0065 5.0359 46 1 2.0869 6.2234 3.3486 47 1 0.4835 6.7995 3.8647 48 1 1.6372 3.1468 4.7544 49 1 2.6764 4.0489 3.6197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121527284.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:58 Heat of formation + Delta-G solvation = -3.111556 kcal Electronic energy + Delta-G solvation = -30813.435830 eV Core-core repulsion = 26777.254352 eV Total energy + Delta-G solvation = -4036.181478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.08019 -40.99502 -38.17326 -37.71274 -36.95365 -34.57952 -34.27786 -33.78483 -33.12024 -31.51995 -29.52430 -28.35353 -27.80209 -27.18252 -25.79428 -23.72696 -23.19304 -21.95720 -21.73405 -21.30824 -20.69020 -19.19697 -18.65666 -18.06324 -17.56896 -17.37455 -16.72368 -16.67606 -16.38625 -16.13700 -15.94263 -15.72827 -15.45772 -14.83133 -14.72076 -14.48472 -14.35131 -14.22253 -14.11574 -13.43738 -13.35367 -13.27424 -13.01558 -12.83403 -12.71967 -12.66261 -12.57506 -12.49922 -12.48654 -12.28519 -12.10429 -11.99912 -11.67239 -11.56292 -11.31382 -11.04841 -10.72041 -10.67647 -10.53390 -10.49060 -10.17777 -9.43165 -8.13265 -6.39830 0.75185 0.88668 1.42178 1.44515 1.53248 1.56139 1.78525 2.40309 2.56881 2.69164 3.13437 3.39665 3.56897 3.65500 3.70623 3.75827 3.82518 3.92590 4.00635 4.07875 4.16496 4.18427 4.29144 4.36375 4.43290 4.49412 4.52664 4.54862 4.60942 4.67115 4.70580 4.79682 4.81501 4.89759 4.94325 4.96946 5.08773 5.11572 5.16937 5.26062 5.48829 5.57231 5.61558 5.65897 5.70162 5.71899 6.02361 6.18837 6.26264 6.72143 7.32732 7.51023 7.72037 8.91653 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018011 B = 0.003052 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.252130 B = 9173.482747 C = 9891.154781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.201 4.201 3 C 0.133 3.867 4 N -0.454 5.454 5 C 0.212 3.788 6 C -0.045 4.045 7 C 0.244 3.756 8 H 0.011 0.989 9 O -0.575 6.575 10 C -0.580 4.580 11 H 0.071 0.929 12 C 0.025 3.975 13 N -0.901 5.901 14 Si 0.962 3.038 15 H -0.257 1.257 16 H -0.279 1.279 17 H -0.286 1.286 18 N -0.338 5.338 19 N -0.356 5.356 20 C 0.347 3.653 21 N -0.455 5.455 22 C 0.057 3.943 23 C -0.137 4.137 24 C 0.052 3.948 25 O -0.400 6.400 26 C 0.098 3.902 27 H 0.076 0.924 28 C -0.145 4.145 29 C 0.054 3.946 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.355 0.645 38 H 0.260 0.740 39 H 0.090 0.910 40 H 0.024 0.976 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.040 0.960 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.058 0.942 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.874 -1.605 6.494 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.220 4.220 3 C 0.013 3.987 4 N -0.146 5.146 5 C -0.057 4.057 6 C -0.085 4.085 7 C 0.186 3.814 8 H 0.029 0.971 9 O -0.379 6.379 10 C -0.618 4.618 11 H 0.090 0.910 12 C -0.177 4.177 13 N -0.538 5.538 14 Si 0.787 3.213 15 H -0.181 1.181 16 H -0.204 1.204 17 H -0.212 1.212 18 N -0.177 5.177 19 N -0.200 5.200 20 C -0.010 4.010 21 N -0.180 5.180 22 C -0.071 4.071 23 C -0.175 4.175 24 C -0.023 4.023 25 O -0.321 6.321 26 C 0.040 3.960 27 H 0.094 0.906 28 C -0.203 4.203 29 C -0.072 4.072 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.201 0.799 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.042 0.958 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.132 0.868 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.854 -0.595 7.783 24.150 hybrid contribution 0.706 -1.220 -1.385 1.976 sum -22.147 -1.815 6.399 23.125 Atomic orbital electron populations 1.24227 0.94553 1.04069 0.94467 1.23026 0.97127 0.96892 1.04908 1.21221 0.93262 0.98758 0.85497 1.46307 1.13206 1.43153 1.11982 1.25114 0.83975 1.00229 0.96406 1.20890 0.97238 0.97756 0.92649 1.19072 0.87148 0.85424 0.89806 0.97130 1.86597 1.57178 1.38273 1.55848 1.22007 1.22052 0.94878 1.22878 0.91044 1.25925 0.97628 0.95366 0.98804 1.70244 1.35053 1.08549 1.39968 0.85469 0.78066 0.79379 0.78397 1.18108 1.20448 1.21175 1.73894 1.23025 1.16149 1.04658 1.74402 1.00201 1.19112 1.26307 1.22478 0.94926 0.99071 0.84548 1.56034 1.01778 1.15562 1.44628 1.21569 0.91216 0.93571 1.00703 1.22059 0.95051 1.01709 0.98704 1.22560 1.01219 0.81821 0.96730 1.88273 1.48410 1.27301 1.68069 1.21843 0.85209 0.93976 0.94964 0.90584 1.21841 1.01111 0.94754 1.02574 1.22466 1.00767 0.91783 0.92206 0.85791 0.86510 0.87197 0.86804 0.87812 0.88778 0.88072 0.79933 0.93077 0.89188 0.95751 0.89289 0.86158 0.86781 0.94187 0.91916 0.90965 0.90407 0.92370 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 12.78 67.79 0.87 -0.75 16 2 C -0.20 -3.64 9.15 25.66 0.23 -3.40 16 3 C 0.13 3.16 6.05 85.63 0.52 3.67 16 4 N -0.45 -14.81 2.79 -518.90 -1.45 -16.26 16 5 C 0.21 8.48 7.08 137.64 0.97 9.45 16 6 C -0.05 -1.78 5.17 29.85 0.15 -1.63 16 7 C 0.24 12.23 2.82 29.85 0.08 12.32 16 8 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 9 O -0.57 -28.20 12.13 -148.98 -1.81 -30.00 16 10 C -0.58 -30.45 8.77 25.60 0.22 -30.22 16 11 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 12 C 0.03 1.38 5.40 84.66 0.46 1.84 16 13 N -0.90 -53.61 12.84 21.45 0.28 -53.34 16 14 Si 0.96 42.22 29.54 68.60 2.03 44.25 16 15 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 16 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 18 N -0.34 -15.41 12.18 -49.53 -0.60 -16.02 16 19 N -0.36 -14.84 11.44 -58.00 -0.66 -15.50 16 20 C 0.35 11.72 6.57 260.11 1.71 13.42 16 21 N -0.46 -11.50 4.03 -720.98 -2.91 -14.41 16 22 C 0.06 1.11 4.91 87.94 0.43 1.54 16 23 C -0.14 -1.71 5.67 30.33 0.17 -1.54 16 24 C 0.05 0.78 6.26 71.24 0.45 1.22 16 25 O -0.40 -8.02 10.54 -148.98 -1.57 -9.59 16 26 C 0.10 2.00 2.85 29.86 0.09 2.09 16 27 H 0.08 1.53 7.26 -2.39 -0.02 1.51 16 28 C -0.15 -2.70 9.32 71.98 0.67 -2.03 16 29 C 0.05 1.37 4.45 85.43 0.38 1.75 16 30 H 0.12 1.05 8.06 -2.91 -0.02 1.03 16 31 H 0.12 1.07 7.83 -2.91 -0.02 1.05 16 32 H 0.11 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.11 2.34 7.77 -2.39 -0.02 2.32 16 34 H 0.10 2.58 6.49 -2.39 -0.02 2.57 16 35 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 36 H 0.10 3.31 7.73 -2.39 -0.02 3.30 16 37 H 0.36 14.49 7.99 -74.06 -0.59 13.89 16 38 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.09 1.63 5.33 -2.39 -0.01 1.62 16 40 H 0.02 0.55 7.63 -2.39 -0.02 0.53 16 41 H 0.09 1.15 7.25 -2.39 -0.02 1.13 16 42 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.04 0.68 6.61 -2.39 -0.02 0.66 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.07 1.37 8.03 -2.39 -0.02 1.35 16 47 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 1.53 6.85 -2.39 -0.02 1.51 16 49 H 0.08 2.34 7.14 -2.39 -0.02 2.32 16 Total: -1.00 -74.31 388.99 1.07 -73.24 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.36 Total: 29.90 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 7.41 Total: 7.74 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -5.35 Total: -115.53 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -3.38 Total: -39.60 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -74.31 1.07 -73.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121527284.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.126 kcal (2) G-P(sol) polarization free energy of solvation -74.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds