Wall clock time and date at job start Tue Mar 31 2020 20:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00011 * 2 1 4 4 H 1.08997 * 109.47284 * 30.00492 * 3 2 1 5 5 C 1.52994 * 109.47244 * 269.99653 * 3 2 1 6 6 C 1.53004 * 109.46957 * 149.99874 * 3 2 1 7 7 C 1.52993 * 109.47466 * 295.00354 * 6 3 2 8 8 C 1.50705 * 109.47427 * 179.97438 * 7 6 3 9 9 O 1.21278 * 119.99451 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99987 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99937 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47346 * 179.97438 * 11 10 8 13 13 C 1.40075 * 126.13131 * 259.68972 * 12 11 10 14 14 N 1.31006 * 108.26036 * 179.97438 * 13 12 11 15 15 N 1.39748 * 108.17255 * 0.52606 * 14 13 12 16 16 C 1.34646 * 126.12520 * 79.99857 * 12 11 10 17 17 C 1.51042 * 127.90701 * 359.44526 * 16 12 11 18 18 N 1.47501 * 106.99633 * 169.57180 * 17 16 12 19 19 C 1.36939 * 121.00898 * 222.97347 * 18 17 16 20 20 H 1.08001 * 119.99771 * 155.89838 * 19 18 17 21 21 C 1.38811 * 119.99891 * 335.89554 * 19 18 17 22 22 N 1.31618 * 120.00397 * 344.44659 * 21 19 18 23 23 Si 1.86803 * 119.99696 * 164.44453 * 21 19 18 24 24 H 1.48501 * 109.46993 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46997 * 119.99997 * 23 21 19 26 26 H 1.48494 * 109.47501 * 239.99985 * 23 21 19 27 27 C 1.47078 * 117.97617 * 42.97352 * 18 17 16 28 28 C 1.46558 * 127.32048 * 179.23868 * 15 14 13 29 29 H 1.09002 * 109.46608 * 59.99645 * 1 2 3 30 30 H 1.08996 * 109.46949 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46542 * 300.00174 * 1 2 3 32 32 H 1.09009 * 109.46915 * 60.00467 * 5 3 2 33 33 H 1.09005 * 109.46932 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47665 * 300.00606 * 5 3 2 35 35 H 1.08996 * 109.47382 * 174.99868 * 6 3 2 36 36 H 1.09010 * 109.46869 * 55.00242 * 6 3 2 37 37 H 1.09005 * 109.47183 * 59.99584 * 7 6 3 38 38 H 1.09004 * 109.47240 * 300.00173 * 7 6 3 39 39 H 0.97001 * 120.00160 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.47118 * 299.99302 * 11 10 8 41 41 H 1.09005 * 109.47395 * 59.99629 * 11 10 8 42 42 H 1.08004 * 125.86571 * 0.08563 * 13 12 11 43 43 H 1.09000 * 109.94828 * 288.93763 * 17 16 12 44 44 H 1.08997 * 109.94964 * 50.20007 * 17 16 12 45 45 H 0.96996 * 120.00309 * 180.02562 * 22 21 19 46 46 H 1.09006 * 109.50945 * 176.52105 * 27 18 17 47 47 H 1.09001 * 109.51316 * 56.37565 * 27 18 17 48 48 H 1.09001 * 109.51042 * 281.39708 * 28 15 14 49 49 H 1.08997 * 109.51113 * 41.53795 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2178 1.7713 -1.4424 6 6 3.3590 1.2632 0.7213 7 6 3.1384 0.9183 2.1954 8 6 4.4669 0.8761 2.9058 9 8 5.4893 1.1003 2.2932 10 7 4.5186 0.5902 4.2218 11 6 5.8099 0.5497 4.9124 12 6 5.5926 0.2111 6.3647 13 6 5.5795 1.1188 7.4314 14 7 5.3614 0.4502 8.5367 15 7 5.2410 -0.9034 8.2107 16 6 5.3819 -1.0190 6.8700 17 6 5.3021 -2.3286 6.1216 18 7 5.3131 -3.4037 7.1314 19 6 6.0677 -4.5323 6.9521 20 1 6.3839 -5.1119 7.8068 21 6 6.4261 -4.9313 5.6718 22 7 5.8061 -4.4252 4.6269 23 14 7.7885 -6.1867 5.4319 24 1 8.3211 -6.5982 6.7556 25 1 7.2474 -7.3754 4.7253 26 1 8.8795 -5.5849 4.6241 27 6 4.4891 -3.2266 8.3367 28 6 5.0086 -2.0213 9.1295 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.2569 1.8015 -1.9563 33 1 2.6607 2.7673 -1.4424 34 1 2.8830 1.0774 -1.9563 35 1 3.8428 2.2369 0.6444 36 1 3.9932 0.5050 0.2617 37 1 2.6546 -0.0554 2.2723 38 1 2.5042 1.6764 2.6550 39 1 3.7007 0.4120 4.7119 40 1 6.4439 -0.2088 4.4531 41 1 6.2940 1.5233 4.8352 42 1 5.7226 2.1866 7.3554 43 1 4.3790 -2.3709 5.5436 44 1 6.1618 -2.4315 5.4595 45 1 6.0563 -4.7044 3.7323 46 1 4.5510 -4.1223 8.9549 47 1 3.4525 -3.0544 8.0470 48 1 5.9426 -2.2851 9.6256 49 1 4.2685 -1.7316 9.8754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128311878.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:35 Heat of formation + Delta-G solvation = 8.217358 kcal Electronic energy + Delta-G solvation = -29462.123869 eV Core-core repulsion = 25426.433650 eV Total energy + Delta-G solvation = -4035.690219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.98283 -39.43755 -38.36806 -36.30670 -34.77245 -33.72716 -32.97206 -31.35664 -30.40130 -30.18929 -28.70019 -26.88593 -26.14764 -25.22152 -23.89678 -23.33682 -21.75940 -21.18056 -20.18119 -19.92694 -18.38859 -17.11079 -16.87044 -16.71663 -16.10617 -15.65967 -15.33016 -15.24902 -15.16844 -14.94437 -14.60302 -13.89614 -13.78715 -13.58373 -13.47850 -13.28325 -13.23519 -13.12434 -12.74888 -12.46496 -12.33430 -12.32175 -11.70367 -11.62464 -11.60016 -11.42977 -11.30165 -11.11293 -10.98366 -10.87460 -10.72086 -10.70291 -10.17931 -10.16867 -10.07632 -9.80979 -9.58744 -8.90554 -8.67759 -8.54728 -7.91346 -7.07797 -6.00483 -3.43474 2.42800 2.94764 2.98687 3.02732 3.29927 3.38101 3.39762 3.63215 3.81482 4.32327 4.66103 4.76235 4.93230 4.96137 5.06978 5.12264 5.14137 5.20226 5.21640 5.22944 5.38496 5.41648 5.46113 5.53168 5.54272 5.55966 5.61255 5.67492 5.74243 5.75851 5.87127 5.97428 6.03380 6.17684 6.22606 6.24608 6.38742 6.41667 6.56005 6.79030 6.92359 7.07804 7.09284 7.15885 7.58219 7.61346 7.86801 8.09984 8.23838 8.55615 8.92750 9.55197 10.07647 11.10414 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.003179 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.652327 B = 8805.865416 C =10408.442384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.083 3.917 4 H 0.059 0.941 5 C -0.174 4.174 6 C -0.100 4.100 7 C -0.139 4.139 8 C 0.512 3.488 9 O -0.550 6.550 10 N -0.720 5.720 11 C 0.209 3.791 12 C -0.288 4.288 13 C 0.056 3.944 14 N -0.319 5.319 15 N -0.358 5.358 16 C 0.119 3.881 17 C 0.231 3.769 18 N -0.597 5.597 19 C -0.265 4.265 20 H 0.074 0.926 21 C 0.009 3.991 22 N -0.902 5.902 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.286 1.286 27 C 0.129 3.871 28 C 0.114 3.886 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.399 0.601 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.175 0.825 43 H 0.057 0.943 44 H 0.109 0.891 45 H 0.259 0.741 46 H 0.084 0.916 47 H 0.036 0.964 48 H 0.076 0.924 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.021 11.929 -4.074 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.025 3.975 4 H 0.077 0.923 5 C -0.232 4.232 6 C -0.138 4.138 7 C -0.179 4.179 8 C 0.298 3.702 9 O -0.428 6.428 10 N -0.371 5.371 11 C 0.086 3.914 12 C -0.300 4.300 13 C -0.131 4.131 14 N -0.139 5.139 15 N -0.139 5.139 16 C -0.012 4.012 17 C 0.104 3.896 18 N -0.319 5.319 19 C -0.393 4.393 20 H 0.092 0.908 21 C -0.191 4.191 22 N -0.545 5.545 23 Si 0.737 3.263 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.212 1.212 27 C 0.001 3.999 28 C -0.010 4.010 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.233 0.767 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.192 0.808 43 H 0.074 0.926 44 H 0.127 0.873 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.054 0.946 48 H 0.094 0.906 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.291 11.799 -3.272 15.370 hybrid contribution 0.139 -0.494 -0.639 0.820 sum -9.152 11.304 -3.912 15.061 Atomic orbital electron populations 1.22773 0.81472 1.02756 0.99614 1.87991 1.19268 1.27725 1.95022 1.22213 0.95032 0.84642 0.95567 0.92264 1.22269 1.02163 1.01831 0.96914 1.21446 0.95405 1.03681 0.93249 1.21633 0.95570 1.04570 0.96173 1.20619 0.91330 0.76241 0.81962 1.90678 1.36371 1.49703 1.66018 1.46225 1.10399 1.71186 1.09291 1.19291 0.84628 1.01141 0.86365 1.19448 1.22603 0.92157 0.95800 1.23667 1.00064 0.99515 0.89864 1.77162 1.25362 0.87672 1.23667 1.48496 1.54677 1.05012 1.05741 1.22590 0.94709 0.98903 0.85040 1.19920 1.02874 0.77448 0.89323 1.44212 1.50887 1.18221 1.18594 1.19192 1.25769 1.02210 0.92167 0.90844 1.25039 0.99554 0.98695 0.95783 1.69942 1.40546 1.45972 0.98052 0.86147 0.81641 0.80577 0.77931 1.20195 1.21437 1.21228 1.21285 0.93843 0.94559 0.90248 1.22564 1.01799 0.84673 0.91970 0.94408 0.89664 0.94101 0.92703 0.91543 0.91531 0.89990 0.90044 0.88160 0.89604 0.76738 0.90941 0.91495 0.80798 0.92566 0.87311 0.93038 0.89743 0.94609 0.90594 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.34 9.88 -35.23 -0.35 -4.69 16 3 C 0.08 0.80 2.72 -26.73 -0.07 0.73 16 4 H 0.06 0.48 7.79 -51.93 -0.40 0.07 16 5 C -0.17 -1.48 9.53 37.15 0.35 -1.12 16 6 C -0.10 -1.14 4.21 -26.73 -0.11 -1.25 16 7 C -0.14 -1.61 5.60 -27.88 -0.16 -1.76 16 8 C 0.51 7.75 7.83 -10.99 -0.09 7.66 16 9 O -0.55 -10.29 15.98 5.56 0.09 -10.20 16 10 N -0.72 -10.53 5.55 -61.47 -0.34 -10.87 16 11 C 0.21 3.42 5.95 -5.20 -0.03 3.39 16 12 C -0.29 -5.00 5.46 -105.21 -0.57 -5.58 16 13 C 0.06 0.91 11.97 -17.22 -0.21 0.70 16 14 N -0.32 -5.88 12.61 30.70 0.39 -5.49 16 15 N -0.36 -6.87 4.03 -56.89 -0.23 -7.09 16 16 C 0.12 2.36 6.71 -82.17 -0.55 1.81 16 17 C 0.23 5.21 5.11 -4.48 -0.02 5.19 16 18 N -0.60 -13.89 3.01 -172.92 -0.52 -14.41 16 19 C -0.26 -6.78 9.66 -15.06 -0.15 -6.93 16 20 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 21 C 0.01 0.23 5.00 -17.43 -0.09 0.14 16 22 N -0.90 -24.68 11.07 55.49 0.61 -24.06 16 23 Si 0.91 20.93 29.58 -169.99 -5.03 15.90 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.13 2.40 6.50 -3.56 -0.02 2.38 16 28 C 0.11 1.93 7.45 -3.84 -0.03 1.90 16 29 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.05 0.41 7.87 -51.92 -0.41 0.00 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.08 1.11 8.10 -51.92 -0.42 0.69 16 37 H 0.10 1.19 7.82 -51.93 -0.41 0.79 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.40 5.23 8.46 -40.82 -0.35 4.88 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.18 2.21 8.06 -52.48 -0.42 1.79 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.11 2.78 6.46 -51.93 -0.34 2.45 16 45 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 49 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 401.72 15.07 6.05 6.05 Total: -1.00 -31.49 401.72 -8.15 -39.64 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -8.18 Total: 6.61 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -0.65 Total: 8.62 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.09 Total: -61.93 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.26 Total: -14.89 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.49 -8.15 -39.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128311878.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.862 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds