Wall clock time and date at job start Tue Mar 31 2020 20:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00011 * 2 1 4 4 H 1.08997 * 109.47284 * 30.00492 * 3 2 1 5 5 C 1.52994 * 109.47244 * 269.99653 * 3 2 1 6 6 C 1.53004 * 109.46957 * 149.99874 * 3 2 1 7 7 C 1.52993 * 109.47466 * 295.00354 * 6 3 2 8 8 C 1.50705 * 109.47427 * 179.97438 * 7 6 3 9 9 O 1.21278 * 119.99451 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99987 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99937 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47346 * 179.97438 * 11 10 8 13 13 C 1.40075 * 126.13131 * 259.68972 * 12 11 10 14 14 N 1.31006 * 108.26036 * 179.97438 * 13 12 11 15 15 N 1.39748 * 108.17255 * 0.52606 * 14 13 12 16 16 C 1.34646 * 126.12520 * 79.99857 * 12 11 10 17 17 C 1.51042 * 127.90701 * 359.44526 * 16 12 11 18 18 N 1.47501 * 106.99633 * 169.57180 * 17 16 12 19 19 C 1.36939 * 121.00898 * 222.97347 * 18 17 16 20 20 H 1.08001 * 119.99771 * 155.89838 * 19 18 17 21 21 C 1.38811 * 119.99891 * 335.89554 * 19 18 17 22 22 N 1.31618 * 120.00397 * 344.44659 * 21 19 18 23 23 Si 1.86803 * 119.99696 * 164.44453 * 21 19 18 24 24 H 1.48501 * 109.46993 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46997 * 119.99997 * 23 21 19 26 26 H 1.48494 * 109.47501 * 239.99985 * 23 21 19 27 27 C 1.47078 * 117.97617 * 42.97352 * 18 17 16 28 28 C 1.46558 * 127.32048 * 179.23868 * 15 14 13 29 29 H 1.09002 * 109.46608 * 59.99645 * 1 2 3 30 30 H 1.08996 * 109.46949 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46542 * 300.00174 * 1 2 3 32 32 H 1.09009 * 109.46915 * 60.00467 * 5 3 2 33 33 H 1.09005 * 109.46932 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47665 * 300.00606 * 5 3 2 35 35 H 1.08996 * 109.47382 * 174.99868 * 6 3 2 36 36 H 1.09010 * 109.46869 * 55.00242 * 6 3 2 37 37 H 1.09005 * 109.47183 * 59.99584 * 7 6 3 38 38 H 1.09004 * 109.47240 * 300.00173 * 7 6 3 39 39 H 0.97001 * 120.00160 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.47118 * 299.99302 * 11 10 8 41 41 H 1.09005 * 109.47395 * 59.99629 * 11 10 8 42 42 H 1.08004 * 125.86571 * 0.08563 * 13 12 11 43 43 H 1.09000 * 109.94828 * 288.93763 * 17 16 12 44 44 H 1.08997 * 109.94964 * 50.20007 * 17 16 12 45 45 H 0.96996 * 120.00309 * 180.02562 * 22 21 19 46 46 H 1.09006 * 109.50945 * 176.52105 * 27 18 17 47 47 H 1.09001 * 109.51316 * 56.37565 * 27 18 17 48 48 H 1.09001 * 109.51042 * 281.39708 * 28 15 14 49 49 H 1.08997 * 109.51113 * 41.53795 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2178 1.7713 -1.4424 6 6 3.3590 1.2632 0.7213 7 6 3.1384 0.9183 2.1954 8 6 4.4669 0.8761 2.9058 9 8 5.4893 1.1003 2.2932 10 7 4.5186 0.5902 4.2218 11 6 5.8099 0.5497 4.9124 12 6 5.5926 0.2111 6.3647 13 6 5.5795 1.1188 7.4314 14 7 5.3614 0.4502 8.5367 15 7 5.2410 -0.9034 8.2107 16 6 5.3819 -1.0190 6.8700 17 6 5.3021 -2.3286 6.1216 18 7 5.3131 -3.4037 7.1314 19 6 6.0677 -4.5323 6.9521 20 1 6.3839 -5.1119 7.8068 21 6 6.4261 -4.9313 5.6718 22 7 5.8061 -4.4252 4.6269 23 14 7.7885 -6.1867 5.4319 24 1 8.3211 -6.5982 6.7556 25 1 7.2474 -7.3754 4.7253 26 1 8.8795 -5.5849 4.6241 27 6 4.4891 -3.2266 8.3367 28 6 5.0086 -2.0213 9.1295 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.2569 1.8015 -1.9563 33 1 2.6607 2.7673 -1.4424 34 1 2.8830 1.0774 -1.9563 35 1 3.8428 2.2369 0.6444 36 1 3.9932 0.5050 0.2617 37 1 2.6546 -0.0554 2.2723 38 1 2.5042 1.6764 2.6550 39 1 3.7007 0.4120 4.7119 40 1 6.4439 -0.2088 4.4531 41 1 6.2940 1.5233 4.8352 42 1 5.7226 2.1866 7.3554 43 1 4.3790 -2.3709 5.5436 44 1 6.1618 -2.4315 5.4595 45 1 6.0563 -4.7044 3.7323 46 1 4.5510 -4.1223 8.9549 47 1 3.4525 -3.0544 8.0470 48 1 5.9426 -2.2851 9.6256 49 1 4.2685 -1.7316 9.8754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128311878.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:34 Heat of formation + Delta-G solvation = -12.898337 kcal Electronic energy + Delta-G solvation = -29463.039514 eV Core-core repulsion = 25426.433650 eV Total energy + Delta-G solvation = -4036.605864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.42844 -40.63592 -39.20252 -37.97236 -36.11852 -34.64961 -34.61612 -32.93764 -31.84665 -31.33687 -30.07430 -27.87526 -27.51098 -26.58243 -25.26710 -24.69739 -23.29684 -22.00736 -21.59283 -21.17309 -19.95203 -18.54783 -18.22344 -17.77677 -17.50440 -16.98166 -16.71617 -16.47673 -16.24810 -16.00975 -15.81283 -15.50783 -15.31247 -15.02175 -14.80442 -14.55905 -14.53749 -14.09776 -13.96053 -13.69280 -13.36821 -13.32335 -13.15390 -13.05615 -12.95776 -12.76659 -12.62442 -12.39328 -12.32410 -12.19469 -12.03902 -12.00648 -11.89138 -11.62029 -11.49642 -10.93248 -10.79099 -10.48615 -10.06782 -9.97890 -9.38208 -8.95914 -7.99519 -5.43239 0.93084 1.44101 1.47716 1.55764 1.59534 1.66846 1.76065 2.44040 2.58768 2.94622 3.19802 3.42751 3.60843 3.80022 3.83943 3.87041 4.11804 4.16834 4.20566 4.24169 4.28526 4.37620 4.39352 4.47419 4.54465 4.55000 4.66508 4.72081 4.77818 4.81475 4.83927 4.87583 4.92640 4.94535 5.02180 5.02735 5.11799 5.24356 5.25876 5.36325 5.36743 5.53678 5.58019 5.76067 6.08964 6.19546 6.39013 6.66928 6.80312 6.98288 7.34793 7.64865 8.15824 9.09739 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.003179 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.652327 B = 8805.865416 C =10408.442384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.085 3.915 4 H 0.084 0.916 5 C -0.173 4.173 6 C -0.098 4.098 7 C -0.129 4.129 8 C 0.508 3.492 9 O -0.590 6.590 10 N -0.713 5.713 11 C 0.216 3.784 12 C -0.274 4.274 13 C 0.067 3.933 14 N -0.326 5.326 15 N -0.367 5.367 16 C 0.094 3.906 17 C 0.250 3.750 18 N -0.616 5.616 19 C -0.267 4.267 20 H 0.080 0.920 21 C -0.043 4.043 22 N -0.931 5.931 23 Si 0.965 3.035 24 H -0.264 1.264 25 H -0.290 1.290 26 H -0.296 1.296 27 C 0.128 3.872 28 C 0.117 3.883 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.408 0.592 40 H 0.039 0.961 41 H 0.083 0.917 42 H 0.216 0.784 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.252 0.748 46 H 0.099 0.901 47 H 0.041 0.959 48 H 0.076 0.924 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 13.672 -2.619 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C 0.027 3.973 4 H 0.102 0.898 5 C -0.230 4.230 6 C -0.136 4.136 7 C -0.169 4.169 8 C 0.296 3.704 9 O -0.471 6.471 10 N -0.364 5.364 11 C 0.091 3.909 12 C -0.286 4.286 13 C -0.119 4.119 14 N -0.146 5.146 15 N -0.148 5.148 16 C -0.037 4.037 17 C 0.123 3.877 18 N -0.340 5.340 19 C -0.396 4.396 20 H 0.098 0.902 21 C -0.239 4.239 22 N -0.576 5.576 23 Si 0.793 3.207 24 H -0.188 1.188 25 H -0.217 1.217 26 H -0.223 1.223 27 C 0.001 3.999 28 C -0.006 4.006 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.141 0.859 39 H 0.244 0.756 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.232 0.768 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.118 0.882 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.587 13.534 -1.762 17.273 hybrid contribution 0.506 -0.997 -1.043 1.529 sum -10.082 12.537 -2.805 16.331 Atomic orbital electron populations 1.22935 0.79956 1.03335 1.00928 1.87956 1.21088 1.28862 1.95237 1.22247 0.94201 0.84625 0.96190 0.89794 1.22260 1.02557 1.02028 0.96178 1.21422 0.96278 1.02776 0.93146 1.21634 0.93657 1.05574 0.96030 1.21300 0.92234 0.75087 0.81785 1.90658 1.38095 1.51571 1.66755 1.46139 1.10147 1.70737 1.09392 1.19131 0.85147 1.00804 0.85790 1.19549 1.21012 0.91678 0.96404 1.24247 0.98237 1.01040 0.88372 1.77159 1.25787 0.87218 1.24437 1.48683 1.54965 1.05775 1.05415 1.22204 0.97304 0.98336 0.85849 1.19327 1.00111 0.79157 0.89076 1.44448 1.51782 1.17839 1.19894 1.19526 1.25389 1.02439 0.92234 0.90232 1.25722 1.01587 1.00782 0.95802 1.70092 1.41997 1.47569 0.97957 0.85250 0.79038 0.78436 0.77991 1.18801 1.21666 1.22261 1.21455 0.93397 0.96223 0.88798 1.22552 1.02718 0.83536 0.91745 0.93067 0.89604 0.92735 0.91490 0.90242 0.93178 0.89533 0.93273 0.88492 0.85948 0.75646 0.94313 0.89844 0.76787 0.94769 0.91192 0.93898 0.88240 0.94109 0.90530 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.82 113.37 1.23 1.59 16 2 O -0.41 -9.09 9.88 -148.98 -1.47 -10.56 16 3 C 0.08 1.52 2.72 30.59 0.08 1.60 16 4 H 0.08 1.10 7.79 -2.39 -0.02 1.08 16 5 C -0.17 -2.73 9.53 71.98 0.69 -2.05 16 6 C -0.10 -2.21 4.21 30.59 0.13 -2.09 16 7 C -0.13 -2.86 5.60 29.85 0.17 -2.69 16 8 C 0.51 15.41 7.83 87.66 0.69 16.10 16 9 O -0.59 -22.68 15.98 -3.02 -0.05 -22.73 16 10 N -0.71 -20.70 5.55 -466.79 -2.59 -23.29 16 11 C 0.22 7.05 5.95 85.63 0.51 7.56 16 12 C -0.27 -9.27 5.46 -20.24 -0.11 -9.38 16 13 C 0.07 2.00 11.97 85.26 1.02 3.02 16 14 N -0.33 -11.14 12.61 -56.80 -0.72 -11.85 16 15 N -0.37 -13.47 4.03 -333.91 -1.35 -14.81 16 16 C 0.09 3.73 6.71 41.31 0.28 4.01 16 17 C 0.25 11.71 5.11 85.55 0.44 12.14 16 18 N -0.62 -28.99 3.01 -701.00 -2.11 -31.10 16 19 C -0.27 -13.77 9.66 84.03 0.81 -12.96 16 20 H 0.08 3.93 7.88 -2.91 -0.02 3.90 16 21 C -0.04 -2.30 5.00 84.86 0.42 -1.87 16 22 N -0.93 -53.12 11.07 21.65 0.24 -52.88 16 23 Si 0.96 43.88 29.58 68.60 2.03 45.91 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 26 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 27 C 0.13 4.63 6.50 86.38 0.56 5.19 16 28 C 0.12 3.74 7.45 86.48 0.64 4.38 16 29 H 0.05 0.61 7.87 -2.39 -0.02 0.59 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 0.65 8.08 -2.39 -0.02 0.63 16 32 H 0.07 0.89 7.87 -2.38 -0.02 0.87 16 33 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 1.84 8.10 -2.39 -0.02 1.82 16 36 H 0.05 1.41 8.10 -2.38 -0.02 1.39 16 37 H 0.10 2.27 7.82 -2.38 -0.02 2.25 16 38 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.41 10.36 8.46 -92.71 -0.78 9.58 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 42 H 0.22 4.47 8.06 -2.91 -0.02 4.45 16 43 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.07 3.80 6.46 -2.39 -0.02 3.79 16 45 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.10 3.25 7.94 -2.38 -0.02 3.23 16 47 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 48 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -70.30 401.72 1.70 -68.61 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.16 Total: 28.14 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 7.55 Total: 24.57 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -6.52 Total: -133.94 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.52 Total: -33.29 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -70.30 1.70 -68.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128311878.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.708 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds