Wall clock time and date at job start Tue Mar 31 2020 20:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47150 * 2 1 4 4 C 1.53009 * 109.47157 * 119.99909 * 2 1 3 5 5 C 1.53000 * 109.46964 * 185.00191 * 4 2 1 6 6 H 1.09001 * 109.46812 * 304.99960 * 5 4 2 7 7 C 1.52995 * 109.46748 * 184.99866 * 5 4 2 8 8 N 1.46496 * 109.47164 * 64.99903 * 5 4 2 9 9 C 1.34780 * 119.99776 * 204.99703 * 8 5 4 10 10 O 1.21700 * 119.99931 * 354.37992 * 9 8 5 11 11 C 1.46679 * 120.00028 * 174.64783 * 9 8 5 12 12 C 1.37871 * 126.23262 * 4.37077 * 11 9 8 13 13 C 1.39831 * 107.08386 * 179.84655 * 12 11 9 14 14 C 1.35458 * 107.86754 * 0.41310 * 13 12 11 15 15 N 1.35531 * 108.86623 * 359.74353 * 14 13 12 16 16 C 1.46500 * 125.67542 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47283 * 239.99605 * 2 1 3 18 18 C 1.46898 * 110.99786 * 84.99773 * 17 2 1 19 19 C 1.50704 * 109.47209 * 180.02562 * 18 17 2 20 20 O 1.21289 * 119.99907 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00021 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99845 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00029 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00194 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99892 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.46910 * 90.00536 * 26 24 22 28 28 H 1.48502 * 109.46997 * 210.00192 * 26 24 22 29 29 H 1.48502 * 109.47025 * 330.00221 * 26 24 22 30 30 H 1.08998 * 109.46937 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47054 * 300.00219 * 1 2 3 32 32 H 1.08997 * 109.47166 * 60.00239 * 1 2 3 33 33 H 1.08998 * 109.46921 * 64.99853 * 4 2 1 34 34 H 1.09001 * 109.46650 * 304.99963 * 4 2 1 35 35 H 1.08999 * 109.47135 * 60.00129 * 7 5 4 36 36 H 1.09007 * 109.47319 * 179.97438 * 7 5 4 37 37 H 1.09001 * 109.47541 * 299.99648 * 7 5 4 38 38 H 0.96995 * 120.00828 * 25.00103 * 8 5 4 39 39 H 1.07997 * 126.45514 * 359.95895 * 12 11 9 40 40 H 1.07999 * 126.06810 * 180.15857 * 13 12 11 41 41 H 1.07998 * 125.56496 * 179.76221 * 14 13 12 42 42 H 1.09005 * 109.47534 * 264.23297 * 16 15 14 43 43 H 1.09002 * 109.47311 * 24.22887 * 16 15 14 44 44 H 1.08997 * 109.47419 * 144.23159 * 16 15 14 45 45 H 1.00891 * 111.00151 * 208.95450 * 17 2 1 46 46 H 1.09002 * 109.47725 * 300.00466 * 18 17 2 47 47 H 1.09004 * 109.46904 * 60.00294 * 18 17 2 48 48 H 0.96999 * 119.99932 * 359.97438 * 21 19 18 49 49 H 0.96997 * 119.99961 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0851 -1.4382 2.4925 8 7 3.9479 0.7894 1.4925 9 6 5.1612 1.2136 1.0867 10 8 5.9762 0.4135 0.6664 11 6 5.5013 2.6386 1.1572 12 6 4.7162 3.6384 1.6911 13 6 5.4257 4.8354 1.5537 14 6 6.6018 4.5538 0.9435 15 7 6.6599 3.2223 0.6972 16 6 7.7708 2.5211 0.0488 17 7 2.0197 -0.6926 -1.1994 18 6 2.0824 0.2225 -2.3468 19 6 2.5873 -0.5220 -3.5560 20 8 2.8678 -1.6989 -3.4701 21 7 2.7282 0.1203 -4.7325 22 6 3.1870 -0.5571 -5.8326 23 1 3.4359 -1.6052 -5.7563 24 6 3.3328 0.1051 -7.0454 25 7 3.7730 -0.5440 -8.0997 26 14 2.9028 1.9182 -7.1771 27 1 4.1042 2.7353 -6.8702 28 1 2.4392 2.2181 -8.5556 29 1 1.8233 2.2425 -6.2102 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -1.7715 1.2057 34 1 1.6053 -0.2617 2.1370 35 1 3.8001 -2.4818 2.3595 36 1 5.1715 -1.3616 2.5382 37 1 3.6546 -1.0592 3.4194 38 1 3.3285 1.4129 1.9028 39 1 3.7383 3.5191 2.1337 40 1 5.0932 5.8119 1.8734 41 1 7.3681 5.2728 0.6941 42 1 7.5577 2.4072 -1.0142 43 1 8.6876 3.0968 0.1758 44 1 7.8937 1.5374 0.5020 45 1 2.9172 -1.1205 -1.0286 46 1 1.0870 0.6162 -2.5525 47 1 2.7588 1.0461 -2.1182 48 1 2.5042 1.0616 -4.8011 49 1 3.8744 -0.0818 -8.9464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133702188.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:55 Heat of formation + Delta-G solvation = -21.852552 kcal Electronic energy + Delta-G solvation = -29717.592760 eV Core-core repulsion = 25680.598612 eV Total energy + Delta-G solvation = -4036.994148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.57667 -39.66219 -38.51563 -37.33830 -35.11932 -33.90676 -33.16807 -31.91396 -31.59474 -30.68468 -29.04386 -27.13876 -26.68284 -26.29240 -23.79059 -23.38038 -21.54946 -20.75079 -20.16278 -19.87448 -19.33593 -18.34365 -18.06945 -16.50705 -16.30427 -15.88258 -15.72670 -15.40485 -15.20637 -14.72844 -14.57161 -14.39932 -14.00804 -13.78616 -13.57306 -13.45516 -13.34883 -12.92403 -12.71094 -12.64996 -12.58044 -12.45272 -12.32711 -12.23089 -12.19129 -12.05593 -11.94345 -11.73139 -11.29173 -11.15947 -10.99228 -10.62075 -10.56698 -10.08635 -9.94301 -9.53671 -9.32167 -8.97507 -8.52323 -8.44316 -8.15750 -8.08850 -6.27799 -3.78759 1.28912 2.41698 2.52234 3.04741 3.08682 3.16331 3.16584 3.24430 3.79143 4.11745 4.15358 4.40828 4.59931 4.62781 4.70708 4.76586 4.88551 4.96448 5.08913 5.14173 5.19090 5.22858 5.25104 5.33076 5.38035 5.45268 5.51082 5.59547 5.67293 5.71731 5.78050 5.79268 5.85315 5.90627 5.95335 5.97664 6.03641 6.05890 6.30662 6.31729 6.52188 6.75455 6.96706 7.18178 7.31795 7.61762 7.63959 8.04794 8.18552 8.63808 8.98772 9.46350 9.87324 10.85520 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008573 B = 0.003630 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.446589 B = 7712.327979 C = 9519.889100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 H 0.043 0.957 4 C -0.129 4.129 5 C 0.138 3.862 6 H 0.093 0.907 7 C -0.161 4.161 8 N -0.714 5.714 9 C 0.587 3.413 10 O -0.542 6.542 11 C -0.052 4.052 12 C -0.144 4.144 13 C -0.209 4.209 14 C 0.013 3.987 15 N -0.408 5.408 16 C 0.065 3.935 17 N -0.662 5.662 18 C 0.050 3.950 19 C 0.451 3.549 20 O -0.563 6.563 21 N -0.592 5.592 22 C -0.303 4.303 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.878 3.122 27 H -0.272 1.272 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.400 0.600 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.168 0.832 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.349 0.651 46 H 0.086 0.914 47 H 0.041 0.959 48 H 0.370 0.630 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 11.838 24.489 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.029 4.029 3 H 0.061 0.939 4 C -0.167 4.167 5 C 0.034 3.966 6 H 0.110 0.890 7 C -0.219 4.219 8 N -0.366 5.366 9 C 0.375 3.625 10 O -0.420 6.420 11 C -0.166 4.166 12 C -0.170 4.170 13 C -0.233 4.233 14 C -0.122 4.122 15 N -0.080 5.080 16 C -0.076 4.076 17 N -0.297 5.297 18 C -0.083 4.083 19 C 0.237 3.763 20 O -0.445 6.445 21 N -0.232 5.232 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.523 5.523 26 Si 0.705 3.295 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.195 1.195 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.235 0.765 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.186 0.814 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.120 0.880 45 H 0.171 0.829 46 H 0.104 0.896 47 H 0.059 0.941 48 H 0.202 0.798 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.844 9.951 23.633 25.657 hybrid contribution 0.193 2.509 -0.029 2.517 sum 1.037 12.461 23.604 26.712 Atomic orbital electron populations 1.21795 0.94463 1.02549 1.00965 1.21557 0.96012 0.95894 0.89473 0.93929 1.22118 0.93263 1.03318 0.98003 1.21116 0.94989 0.80328 1.00162 0.88960 1.22147 1.02083 1.00118 0.97578 1.45733 1.16319 1.11470 1.63051 1.17017 0.82236 0.85880 0.77334 1.90827 1.48202 1.55915 1.47059 1.20079 0.90710 0.93525 1.12258 1.21299 0.99638 0.91958 1.04109 1.20806 0.95650 0.98788 1.08037 1.22056 1.01102 0.84072 1.05006 1.43896 1.14380 1.06966 1.42805 1.22304 0.86982 0.99183 0.99144 1.60211 1.34928 1.31858 1.02749 1.21726 1.01076 0.94017 0.91519 1.19728 0.84352 0.88216 0.84007 1.90561 1.53648 1.15860 1.84390 1.42205 1.60287 1.11040 1.09624 1.19438 1.39942 0.97989 0.85829 0.86283 1.25020 0.97556 0.98310 0.95239 1.69622 1.45378 1.36466 1.00808 0.86691 0.78992 0.85304 0.78534 1.19739 1.20137 1.19486 0.91776 0.92914 0.92658 0.88882 0.90583 0.91225 0.91955 0.92517 0.76497 0.84053 0.84038 0.81447 0.90174 0.89820 0.88039 0.82886 0.89578 0.94128 0.79781 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.41 37.16 0.35 -1.09 16 2 C 0.08 0.91 2.59 -67.71 -0.18 0.73 16 3 H 0.04 0.47 7.28 -51.93 -0.38 0.09 16 4 C -0.13 -1.15 4.35 -26.73 -0.12 -1.26 16 5 C 0.14 1.44 2.44 -67.93 -0.17 1.28 16 6 H 0.09 1.28 5.81 -51.93 -0.30 0.98 16 7 C -0.16 -1.51 9.48 37.16 0.35 -1.15 16 8 N -0.71 -7.14 4.43 -55.12 -0.24 -7.38 16 9 C 0.59 7.68 7.73 -12.85 -0.10 7.58 16 10 O -0.54 -8.87 14.43 5.19 0.07 -8.80 16 11 C -0.05 -0.62 6.89 -81.98 -0.56 -1.18 16 12 C -0.14 -1.39 10.36 -39.12 -0.41 -1.80 16 13 C -0.21 -1.89 10.81 -39.98 -0.43 -2.32 16 14 C 0.01 0.12 11.37 -16.91 -0.19 -0.07 16 15 N -0.41 -4.56 3.16 -120.23 -0.38 -4.94 16 16 C 0.06 0.64 10.48 59.85 0.63 1.27 16 17 N -0.66 -10.49 5.93 -107.99 -0.64 -11.13 16 18 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 19 C 0.45 10.73 7.82 -10.98 -0.09 10.65 16 20 O -0.56 -15.69 15.78 5.55 0.09 -15.60 16 21 N -0.59 -14.69 5.09 -10.96 -0.06 -14.75 16 22 C -0.30 -8.84 10.16 -14.93 -0.15 -8.99 16 23 H 0.12 3.96 7.39 -52.49 -0.39 3.57 16 24 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 25 N -0.88 -26.30 13.96 55.50 0.77 -25.53 16 26 Si 0.88 19.90 27.74 -169.99 -4.71 15.19 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.27 -5.59 6.52 56.52 0.37 -5.23 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.62 7.45 -51.93 -0.39 0.23 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.40 2.95 7.50 -40.82 -0.31 2.65 16 39 H 0.14 0.99 7.45 -52.49 -0.39 0.59 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 44 H 0.10 1.16 6.55 -51.93 -0.34 0.82 16 45 H 0.35 5.99 6.12 -39.30 -0.24 5.75 16 46 H 0.09 1.37 7.44 -51.93 -0.39 0.98 16 47 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 48 H 0.37 8.12 5.76 -40.82 -0.24 7.88 16 49 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 401.00 15.07 6.04 6.04 Total: -1.00 -36.32 401.00 -7.83 -44.15 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -7.59 Total: 17.20 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.18 Total: 5.55 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -0.55 Total: -63.73 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.16 Total: -24.39 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.71 Total: 15.19 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.32 -7.83 -44.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133702188.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.296 kcal (2) G-P(sol) polarization free energy of solvation -36.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds