Wall clock time and date at job start Tue Mar 31 2020 20:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47150 * 2 1 4 4 C 1.53009 * 109.47157 * 119.99909 * 2 1 3 5 5 C 1.53000 * 109.46964 * 185.00191 * 4 2 1 6 6 H 1.09001 * 109.46812 * 304.99960 * 5 4 2 7 7 C 1.52995 * 109.46748 * 184.99866 * 5 4 2 8 8 N 1.46496 * 109.47164 * 64.99903 * 5 4 2 9 9 C 1.34780 * 119.99776 * 204.99703 * 8 5 4 10 10 O 1.21700 * 119.99931 * 354.37992 * 9 8 5 11 11 C 1.46679 * 120.00028 * 174.64783 * 9 8 5 12 12 C 1.37871 * 126.23262 * 4.37077 * 11 9 8 13 13 C 1.39831 * 107.08386 * 179.84655 * 12 11 9 14 14 C 1.35458 * 107.86754 * 0.41310 * 13 12 11 15 15 N 1.35531 * 108.86623 * 359.74353 * 14 13 12 16 16 C 1.46500 * 125.67542 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47283 * 239.99605 * 2 1 3 18 18 C 1.46898 * 110.99786 * 84.99773 * 17 2 1 19 19 C 1.50704 * 109.47209 * 180.02562 * 18 17 2 20 20 O 1.21289 * 119.99907 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00021 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99845 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00029 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00194 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99892 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.46910 * 90.00536 * 26 24 22 28 28 H 1.48502 * 109.46997 * 210.00192 * 26 24 22 29 29 H 1.48502 * 109.47025 * 330.00221 * 26 24 22 30 30 H 1.08998 * 109.46937 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47054 * 300.00219 * 1 2 3 32 32 H 1.08997 * 109.47166 * 60.00239 * 1 2 3 33 33 H 1.08998 * 109.46921 * 64.99853 * 4 2 1 34 34 H 1.09001 * 109.46650 * 304.99963 * 4 2 1 35 35 H 1.08999 * 109.47135 * 60.00129 * 7 5 4 36 36 H 1.09007 * 109.47319 * 179.97438 * 7 5 4 37 37 H 1.09001 * 109.47541 * 299.99648 * 7 5 4 38 38 H 0.96995 * 120.00828 * 25.00103 * 8 5 4 39 39 H 1.07997 * 126.45514 * 359.95895 * 12 11 9 40 40 H 1.07999 * 126.06810 * 180.15857 * 13 12 11 41 41 H 1.07998 * 125.56496 * 179.76221 * 14 13 12 42 42 H 1.09005 * 109.47534 * 264.23297 * 16 15 14 43 43 H 1.09002 * 109.47311 * 24.22887 * 16 15 14 44 44 H 1.08997 * 109.47419 * 144.23159 * 16 15 14 45 45 H 1.00891 * 111.00151 * 208.95450 * 17 2 1 46 46 H 1.09002 * 109.47725 * 300.00466 * 18 17 2 47 47 H 1.09004 * 109.46904 * 60.00294 * 18 17 2 48 48 H 0.96999 * 119.99932 * 359.97438 * 21 19 18 49 49 H 0.96997 * 119.99961 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0851 -1.4382 2.4925 8 7 3.9479 0.7894 1.4925 9 6 5.1612 1.2136 1.0867 10 8 5.9762 0.4135 0.6664 11 6 5.5013 2.6386 1.1572 12 6 4.7162 3.6384 1.6911 13 6 5.4257 4.8354 1.5537 14 6 6.6018 4.5538 0.9435 15 7 6.6599 3.2223 0.6972 16 6 7.7708 2.5211 0.0488 17 7 2.0197 -0.6926 -1.1994 18 6 2.0824 0.2225 -2.3468 19 6 2.5873 -0.5220 -3.5560 20 8 2.8678 -1.6989 -3.4701 21 7 2.7282 0.1203 -4.7325 22 6 3.1870 -0.5571 -5.8326 23 1 3.4359 -1.6052 -5.7563 24 6 3.3328 0.1051 -7.0454 25 7 3.7730 -0.5440 -8.0997 26 14 2.9028 1.9182 -7.1771 27 1 4.1042 2.7353 -6.8702 28 1 2.4392 2.2181 -8.5556 29 1 1.8233 2.2425 -6.2102 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -1.7715 1.2057 34 1 1.6053 -0.2617 2.1370 35 1 3.8001 -2.4818 2.3595 36 1 5.1715 -1.3616 2.5382 37 1 3.6546 -1.0592 3.4194 38 1 3.3285 1.4129 1.9028 39 1 3.7383 3.5191 2.1337 40 1 5.0932 5.8119 1.8734 41 1 7.3681 5.2728 0.6941 42 1 7.5577 2.4072 -1.0142 43 1 8.6876 3.0968 0.1758 44 1 7.8937 1.5374 0.5020 45 1 2.9172 -1.1205 -1.0286 46 1 1.0870 0.6162 -2.5525 47 1 2.7588 1.0461 -2.1182 48 1 2.5042 1.0616 -4.8011 49 1 3.8744 -0.0818 -8.9464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133702188.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:54 Heat of formation + Delta-G solvation = -50.130200 kcal Electronic energy + Delta-G solvation = -29718.818971 eV Core-core repulsion = 25680.598612 eV Total energy + Delta-G solvation = -4038.220359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.32758 -40.65812 -40.22637 -38.48460 -36.30121 -35.87424 -33.95767 -33.78844 -32.83348 -31.71209 -29.78457 -28.31974 -27.61401 -27.42194 -25.52965 -24.26333 -22.38910 -21.50761 -21.36227 -21.06025 -20.67954 -20.30237 -18.86767 -17.87831 -17.45789 -17.07327 -16.77402 -16.59392 -16.53068 -16.14637 -15.70662 -15.45747 -15.20632 -15.10864 -14.76637 -14.54792 -14.37796 -14.15050 -14.12139 -13.94215 -13.51719 -13.38210 -13.30827 -13.25861 -13.12980 -12.97782 -12.91050 -12.82668 -12.66338 -12.46118 -12.20000 -12.02223 -11.89247 -11.56505 -11.49056 -11.06709 -10.48320 -10.29278 -10.21586 -9.70247 -9.34067 -9.17272 -8.45118 -6.06224 0.48028 1.25805 1.30962 1.40336 1.67734 1.83787 1.89868 2.18974 2.36368 2.39181 2.70253 3.10620 3.37407 3.61724 3.81538 3.88364 3.94492 4.08611 4.13530 4.18027 4.29421 4.33045 4.38181 4.47193 4.49099 4.50596 4.53303 4.63927 4.67037 4.76237 4.83260 4.96535 5.02956 5.06568 5.17339 5.22413 5.26218 5.27338 5.46587 5.49856 5.51754 5.82667 5.87803 6.02514 6.08236 6.29394 6.36643 6.53458 6.55460 6.83270 7.18881 7.34311 7.90849 8.72731 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008573 B = 0.003630 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.446589 B = 7712.327979 C = 9519.889100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.079 3.921 3 H 0.053 0.947 4 C -0.117 4.117 5 C 0.140 3.860 6 H 0.051 0.949 7 C -0.155 4.155 8 N -0.697 5.697 9 C 0.580 3.420 10 O -0.591 6.591 11 C -0.094 4.094 12 C -0.131 4.131 13 C -0.218 4.218 14 C 0.016 3.984 15 N -0.424 5.424 16 C 0.067 3.933 17 N -0.679 5.679 18 C 0.066 3.934 19 C 0.446 3.554 20 O -0.613 6.613 21 N -0.590 5.590 22 C -0.331 4.331 23 H 0.054 0.946 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.963 3.037 27 H -0.259 1.259 28 H -0.270 1.270 29 H -0.232 1.232 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.416 0.584 39 H 0.169 0.831 40 H 0.167 0.833 41 H 0.198 0.802 42 H 0.065 0.935 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.337 0.663 46 H 0.114 0.886 47 H 0.059 0.941 48 H 0.388 0.612 49 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.860 16.418 26.993 31.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 H 0.071 0.929 4 C -0.155 4.155 5 C 0.036 3.964 6 H 0.069 0.931 7 C -0.213 4.213 8 N -0.349 5.349 9 C 0.369 3.631 10 O -0.473 6.473 11 C -0.206 4.206 12 C -0.157 4.157 13 C -0.242 4.242 14 C -0.120 4.120 15 N -0.097 5.097 16 C -0.074 4.074 17 N -0.314 5.314 18 C -0.067 4.067 19 C 0.234 3.766 20 O -0.497 6.497 21 N -0.232 5.232 22 C -0.460 4.460 23 H 0.072 0.928 24 C -0.212 4.212 25 N -0.573 5.573 26 Si 0.783 3.217 27 H -0.183 1.183 28 H -0.195 1.195 29 H -0.156 1.156 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.254 0.746 39 H 0.186 0.814 40 H 0.185 0.815 41 H 0.215 0.785 42 H 0.083 0.917 43 H 0.135 0.865 44 H 0.096 0.904 45 H 0.158 0.842 46 H 0.132 0.868 47 H 0.077 0.923 48 H 0.224 0.776 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.402 14.553 26.188 29.993 hybrid contribution 0.918 0.996 -0.769 1.558 sum -0.484 15.548 25.419 29.802 Atomic orbital electron populations 1.21794 0.93179 1.02261 1.02203 1.21736 0.96785 0.96159 0.88264 0.92885 1.22071 0.91622 1.03392 0.98406 1.21024 0.96082 0.80617 0.98724 0.93092 1.22086 1.00480 1.00495 0.98230 1.45577 1.15647 1.11532 1.62169 1.17398 0.82498 0.86415 0.76793 1.90802 1.49786 1.57229 1.49478 1.20184 0.92163 0.93269 1.15011 1.21714 1.00248 0.91419 1.02352 1.21216 0.95466 0.99640 1.07843 1.22718 1.01989 0.83588 1.03659 1.44112 1.14440 1.07847 1.43318 1.22248 0.88361 0.98884 0.97904 1.60283 1.34374 1.32511 1.04209 1.21608 1.02358 0.93594 0.89098 1.21010 0.82357 0.87985 0.85246 1.90535 1.55244 1.18555 1.85388 1.42031 1.60566 1.11724 1.08888 1.19016 1.42518 0.96075 0.88434 0.92774 1.26102 0.96301 1.04998 0.93754 1.69800 1.46141 1.39575 1.01792 0.85390 0.80156 0.76480 0.79669 1.18323 1.19454 1.15565 0.92857 0.89585 0.93505 0.89152 0.86720 0.90734 0.94526 0.89965 0.74613 0.81369 0.81529 0.78511 0.91666 0.86511 0.90374 0.84242 0.86811 0.92289 0.77618 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.41 71.98 0.68 -1.66 16 2 C 0.08 1.58 2.59 44.92 0.12 1.69 16 3 H 0.05 0.97 7.28 -2.39 -0.02 0.96 16 4 C -0.12 -1.79 4.35 30.60 0.13 -1.66 16 5 C 0.14 2.86 2.44 44.99 0.11 2.97 16 6 H 0.05 1.51 5.81 -2.39 -0.01 1.49 16 7 C -0.15 -2.83 9.48 71.98 0.68 -2.15 16 8 N -0.70 -13.11 4.43 -446.50 -1.98 -15.09 16 9 C 0.58 15.39 7.73 86.45 0.67 16.05 16 10 O -0.59 -20.83 14.43 -4.35 -0.06 -20.89 16 11 C -0.09 -2.15 6.89 40.35 0.28 -1.87 16 12 C -0.13 -2.15 10.36 22.57 0.23 -1.92 16 13 C -0.22 -3.20 10.81 22.01 0.24 -2.96 16 14 C 0.02 0.25 11.37 83.48 0.95 1.20 16 15 N -0.42 -9.14 3.16 -534.31 -1.69 -10.83 16 16 C 0.07 1.37 10.48 127.77 1.34 2.71 16 17 N -0.68 -21.16 5.93 -495.56 -2.94 -24.10 16 18 C 0.07 2.24 5.96 85.56 0.51 2.75 16 19 C 0.45 21.72 7.82 87.66 0.69 22.41 16 20 O -0.61 -36.18 15.78 -3.06 -0.05 -36.23 16 21 N -0.59 -29.63 5.09 -306.98 -1.56 -31.20 16 22 C -0.33 -20.28 10.16 84.04 0.85 -19.42 16 23 H 0.05 3.93 7.39 -2.91 -0.02 3.91 16 24 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 25 N -0.93 -57.61 13.96 21.66 0.30 -57.30 16 26 Si 0.96 40.13 27.74 68.60 1.90 42.03 16 27 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 28 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 29 H -0.23 -8.24 6.52 99.48 0.65 -7.59 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.88 7.45 -2.39 -0.02 0.87 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.04 0.86 8.07 -2.38 -0.02 0.84 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.42 4.87 7.50 -92.71 -0.70 4.18 16 39 H 0.17 1.64 7.45 -2.91 -0.02 1.62 16 40 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 43 H 0.12 1.47 8.12 -2.39 -0.02 1.45 16 44 H 0.08 1.96 6.55 -2.39 -0.02 1.94 16 45 H 0.34 12.01 6.12 -89.70 -0.55 11.46 16 46 H 0.11 3.26 7.44 -2.39 -0.02 3.25 16 47 H 0.06 1.81 8.06 -2.39 -0.02 1.79 16 48 H 0.39 16.30 5.76 -92.71 -0.53 15.77 16 49 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -88.43 401.00 1.01 -87.42 By element: Atomic # 1 Polarization: 49.16 SS G_CDS: -0.85 Total: 48.30 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 7.94 Total: 17.89 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -7.87 Total: -138.52 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -0.11 Total: -57.12 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.90 Total: 42.03 kcal Total: -88.43 1.01 -87.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133702188.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.291 kcal (2) G-P(sol) polarization free energy of solvation -88.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds