Wall clock time and date at job start Tue Mar 31 2020 20:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46927 * 2 1 4 4 C 1.52997 * 109.47046 * 240.00323 * 2 1 3 5 5 C 1.53002 * 109.46982 * 174.99556 * 4 2 1 6 6 H 1.08998 * 109.47465 * 305.00480 * 5 4 2 7 7 C 1.52997 * 109.47179 * 184.99911 * 5 4 2 8 8 N 1.46904 * 109.46992 * 65.00259 * 5 4 2 9 9 C 1.46899 * 111.00029 * 205.00108 * 8 5 4 10 10 C 1.50703 * 109.47107 * 179.97438 * 9 8 5 11 11 O 1.21286 * 120.00016 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.37091 * 120.00108 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00333 * 359.97438 * 13 12 10 15 15 C 1.38953 * 119.99712 * 179.97438 * 13 12 10 16 16 N 1.31413 * 119.99793 * 179.97438 * 15 13 12 17 17 Si 1.86790 * 120.00276 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47428 * 90.00011 * 17 15 13 19 19 H 1.48508 * 109.47300 * 209.99991 * 17 15 13 20 20 H 1.48504 * 109.47120 * 329.99721 * 17 15 13 21 21 N 1.46493 * 109.47136 * 120.00038 * 2 1 3 22 22 C 1.34776 * 120.00353 * 275.00248 * 21 2 1 23 23 O 1.21624 * 119.99825 * 0.02562 * 22 21 2 24 24 C 1.47261 * 120.00318 * 179.97438 * 22 21 2 25 25 C 1.46690 * 126.94106 * 0.02745 * 24 22 21 26 26 C 1.34487 * 106.33002 * 179.97438 * 25 24 22 27 27 N 1.36440 * 108.85711 * 0.02562 * 26 25 24 28 28 C 1.46505 * 124.85069 * 180.02562 * 27 26 25 29 29 C 1.34659 * 110.30254 * 359.72512 * 27 26 25 30 30 H 1.09000 * 109.47056 * 60.00458 * 1 2 3 31 31 H 1.09005 * 109.46505 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47020 * 299.99490 * 1 2 3 33 33 H 1.08995 * 109.47413 * 55.00031 * 4 2 1 34 34 H 1.09003 * 109.47515 * 294.99466 * 4 2 1 35 35 H 1.08997 * 109.47489 * 60.00054 * 7 5 4 36 36 H 1.09007 * 109.47004 * 180.02562 * 7 5 4 37 37 H 1.09007 * 109.47280 * 299.99996 * 7 5 4 38 38 H 1.00902 * 111.00190 * 81.03809 * 8 5 4 39 39 H 1.09002 * 109.47043 * 299.99792 * 9 8 5 40 40 H 1.09001 * 109.47354 * 59.99854 * 9 8 5 41 41 H 0.97005 * 119.99463 * 359.97438 * 12 10 9 42 42 H 0.96996 * 120.00229 * 180.02562 * 16 15 13 43 43 H 0.97010 * 119.99933 * 95.00446 * 21 2 1 44 44 H 1.08000 * 126.83194 * 359.96295 * 25 24 22 45 45 H 1.08006 * 125.56950 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.46782 * 89.97263 * 28 27 26 47 47 H 1.08995 * 109.47391 * 209.97380 * 28 27 26 48 48 H 1.09004 * 109.46975 * 329.97516 * 28 27 26 49 49 H 1.07995 * 125.80475 * 180.30410 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 1 3.8571 0.4360 -1.2677 7 6 4.0645 -1.2248 -2.6241 8 7 4.1554 -1.3360 -0.1794 9 6 5.4834 -0.8023 0.1512 10 6 6.0560 -1.5665 1.3171 11 8 5.4201 -2.4668 1.8231 12 7 7.2743 -1.2488 1.7982 13 6 7.7953 -1.9443 2.8584 14 1 7.2295 -2.7466 3.3085 15 6 9.0515 -1.6170 3.3540 16 7 9.5508 -2.2834 4.3706 17 14 10.0306 -0.2300 2.5752 18 1 9.7031 1.0493 3.2545 19 1 11.4824 -0.5083 2.7171 20 1 9.6847 -0.1281 1.1346 21 7 2.0184 -0.6906 1.1961 22 6 2.1471 -0.0183 2.3571 23 8 1.8573 1.1616 2.4119 24 6 2.6374 -0.7127 3.5596 25 6 3.0276 -2.1227 3.6660 26 6 3.4083 -2.3146 4.9415 27 7 3.2817 -1.1383 5.6211 28 6 3.6023 -0.9517 7.0385 29 6 2.8263 -0.1718 4.8016 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6055 -0.2617 -2.1369 34 1 1.7518 -1.7715 -1.2057 35 1 3.6264 -0.6884 -3.4658 36 1 5.1510 -1.1481 -2.6698 37 1 3.7724 -2.2739 -2.6700 38 1 4.1999 -2.3267 -0.3656 39 1 6.1421 -0.9070 -0.7110 40 1 5.3960 0.2515 0.4157 41 1 7.7826 -0.5284 1.3937 42 1 10.4276 -2.0548 4.7168 43 1 2.2492 -1.6318 1.1525 44 1 3.0121 -2.8600 2.8770 45 1 3.7571 -3.2474 5.3595 46 1 4.6469 -0.6570 7.1389 47 1 2.9635 -0.1735 7.4561 48 1 3.4350 -1.8858 7.5748 49 1 2.6400 0.8553 5.0783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134082820.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:09 Heat of formation + Delta-G solvation = -17.752140 kcal Electronic energy + Delta-G solvation = -30766.339102 eV Core-core repulsion = 26729.522761 eV Total energy + Delta-G solvation = -4036.816341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63766 -39.09822 -38.32875 -37.02251 -34.68430 -33.82416 -32.48025 -31.63664 -31.29833 -29.99767 -28.54276 -26.86172 -26.26468 -26.20776 -23.67291 -22.64224 -20.92374 -20.62697 -19.57320 -19.24568 -19.01384 -18.26303 -17.40177 -16.06927 -15.88861 -15.40881 -15.06535 -15.00684 -14.81061 -14.62237 -14.25272 -14.02299 -13.72548 -13.37098 -13.31725 -13.05534 -12.92271 -12.67485 -12.58308 -12.42955 -12.27368 -12.12104 -12.08072 -12.06080 -11.83816 -11.71519 -11.52002 -11.36261 -11.19969 -11.10646 -10.76563 -10.61097 -10.55776 -9.93278 -9.48860 -9.26971 -8.61318 -8.39486 -8.11251 -8.00427 -7.88085 -7.71244 -6.26742 -3.75964 2.35396 3.05146 3.09120 3.10266 3.17527 3.28960 3.85608 3.93803 4.14169 4.22627 4.28798 4.65355 4.92141 4.96843 5.06970 5.21656 5.28489 5.32016 5.32198 5.37414 5.44795 5.51287 5.53908 5.59899 5.60707 5.68533 5.72958 5.79320 5.84839 5.90134 5.93539 5.99502 6.07247 6.08481 6.12084 6.26562 6.38791 6.53470 6.74250 7.15751 7.20410 7.36414 7.59368 7.63902 7.67071 7.74165 8.20935 8.33284 8.66499 9.01565 9.02360 9.49820 9.91881 10.86814 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008620 B = 0.005059 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.303828 B = 5533.107974 C = 7929.682709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.078 0.922 4 C -0.114 4.114 5 C 0.082 3.918 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.654 5.654 9 C 0.050 3.950 10 C 0.457 3.543 11 O -0.551 6.551 12 N -0.597 5.597 13 C -0.293 4.293 14 H 0.119 0.881 15 C 0.039 3.961 16 N -0.887 5.887 17 Si 0.876 3.124 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.271 1.271 21 N -0.691 5.691 22 C 0.599 3.401 23 O -0.581 6.581 24 C -0.230 4.230 25 C -0.125 4.125 26 C -0.021 4.021 27 N -0.447 5.447 28 C 0.072 3.928 29 C 0.060 3.940 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.347 0.653 39 H 0.040 0.960 40 H 0.082 0.918 41 H 0.368 0.632 42 H 0.271 0.729 43 H 0.408 0.592 44 H 0.145 0.855 45 H 0.159 0.841 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.935 2.966 -6.715 15.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.097 0.903 4 C -0.153 4.153 5 C -0.029 4.029 6 H 0.094 0.906 7 C -0.242 4.242 8 N -0.286 5.286 9 C -0.083 4.083 10 C 0.242 3.758 11 O -0.432 6.432 12 N -0.237 5.237 13 C -0.422 4.422 14 H 0.137 0.863 15 C -0.163 4.163 16 N -0.528 5.528 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.197 1.197 21 N -0.341 5.341 22 C 0.389 3.611 23 O -0.464 6.464 24 C -0.241 4.241 25 C -0.148 4.148 26 C -0.147 4.147 27 N -0.123 5.123 28 C -0.070 4.070 29 C -0.075 4.075 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.166 0.834 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.200 0.800 42 H 0.081 0.919 43 H 0.245 0.755 44 H 0.162 0.838 45 H 0.177 0.823 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.632 3.495 -5.361 15.970 hybrid contribution 2.015 0.369 -1.272 2.411 sum -12.617 3.864 -6.633 14.769 Atomic orbital electron populations 1.22209 0.96319 1.01682 1.01953 1.20662 0.92644 0.97272 0.84656 0.90342 1.21911 0.94749 1.01377 0.97259 1.21622 0.94361 0.98606 0.88276 0.90585 1.22523 1.01437 1.01437 0.98763 1.60218 1.21911 1.08058 1.38373 1.21697 0.90079 0.99818 0.96737 1.19651 0.82465 0.87038 0.86610 1.90526 1.59429 1.32298 1.60958 1.42201 1.16474 1.33327 1.31661 1.19369 1.00806 1.15376 1.06644 0.86329 1.24989 0.96856 0.97860 0.96564 1.69614 1.18272 1.40521 1.24406 0.86727 0.80656 0.82899 0.79411 1.19805 1.20376 1.19656 1.45570 1.66086 1.14519 1.07933 1.17327 0.75833 0.85352 0.82600 1.90678 1.53493 1.16217 1.85982 1.20237 1.15220 0.95174 0.93464 1.21885 1.02861 0.94702 0.95369 1.21634 1.09559 0.89992 0.93486 1.43472 1.50483 1.09042 1.09262 1.22030 1.02387 1.03403 0.79198 1.21564 1.02046 0.93892 0.90035 0.92405 0.92778 0.92206 0.90648 0.91264 0.92338 0.92724 0.92360 0.83390 0.94241 0.90008 0.79996 0.91869 0.75528 0.83775 0.82327 0.90692 0.90290 0.89972 0.81895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.48 37.16 0.35 -1.44 16 2 C 0.15 1.89 2.57 -67.93 -0.17 1.72 16 3 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 4 C -0.11 -1.10 4.54 -26.73 -0.12 -1.22 16 5 C 0.08 0.89 2.59 -67.71 -0.18 0.71 16 6 H 0.08 0.89 7.80 -51.93 -0.40 0.49 16 7 C -0.18 -1.70 9.16 37.16 0.34 -1.36 16 8 N -0.65 -8.96 3.48 -107.99 -0.38 -9.34 16 9 C 0.05 0.81 5.97 -4.98 -0.03 0.78 16 10 C 0.46 9.85 7.82 -10.98 -0.09 9.76 16 11 O -0.55 -13.07 14.72 5.55 0.08 -12.98 16 12 N -0.60 -14.04 5.09 -10.97 -0.06 -14.10 16 13 C -0.29 -8.12 10.16 -14.94 -0.15 -8.27 16 14 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 15 C 0.04 1.07 5.50 -17.47 -0.10 0.97 16 16 N -0.89 -25.74 13.96 55.50 0.77 -24.97 16 17 Si 0.88 19.75 27.73 -169.99 -4.71 15.04 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.62 6.52 56.52 0.37 -5.25 16 21 N -0.69 -10.17 3.80 -54.94 -0.21 -10.37 16 22 C 0.60 10.90 7.77 -12.59 -0.10 10.81 16 23 O -0.58 -12.00 16.57 5.26 0.09 -11.92 16 24 C -0.23 -4.22 6.29 -103.35 -0.65 -4.87 16 25 C -0.12 -2.23 9.69 -37.50 -0.36 -2.59 16 26 C -0.02 -0.36 11.34 -16.83 -0.19 -0.55 16 27 N -0.45 -7.02 3.09 -124.53 -0.38 -7.40 16 28 C 0.07 0.81 11.03 59.85 0.66 1.47 16 29 C 0.06 1.02 11.12 -16.84 -0.19 0.84 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.55 7.45 -51.92 -0.39 0.17 16 37 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 38 H 0.35 4.83 8.17 -39.29 -0.32 4.51 16 39 H 0.04 0.58 7.44 -51.93 -0.39 0.19 16 40 H 0.08 1.34 8.06 -51.93 -0.42 0.93 16 41 H 0.37 7.89 5.76 -40.82 -0.24 7.66 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 43 H 0.41 5.90 6.72 -40.82 -0.27 5.63 16 44 H 0.14 2.54 7.52 -52.49 -0.39 2.15 16 45 H 0.16 2.43 8.06 -52.48 -0.42 2.01 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 48 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 49 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 403.89 15.07 6.09 6.09 Total: -1.00 -33.44 403.89 -7.52 -40.96 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -7.84 Total: 22.24 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.97 Total: 6.75 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -0.25 Total: -66.18 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: 0.17 Total: -24.90 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.71 Total: 15.04 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.44 -7.52 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134082820.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.211 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds