Wall clock time and date at job start Tue Mar 31 2020 20:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.52999 * 109.47267 * 239.99353 * 2 1 3 5 5 C 1.52999 * 109.47025 * 175.00200 * 4 2 1 6 6 H 1.08998 * 109.47048 * 55.00490 * 5 4 2 7 7 C 1.53001 * 109.47172 * 174.99952 * 5 4 2 8 8 N 1.46498 * 109.47306 * 295.00152 * 5 4 2 9 9 C 1.34773 * 119.99862 * 154.99889 * 8 5 4 10 10 O 1.21625 * 120.00426 * 0.02562 * 9 8 5 11 11 C 1.47264 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.46690 * 126.94505 * 0.02562 * 11 9 8 13 13 C 1.34485 * 106.33274 * 179.97438 * 12 11 9 14 14 N 1.36441 * 108.85689 * 0.02562 * 13 12 11 15 15 C 1.46506 * 124.84762 * 180.02562 * 14 13 12 16 16 C 1.34655 * 110.30291 * 359.97438 * 14 13 12 17 17 N 1.46905 * 109.46630 * 119.99471 * 2 1 3 18 18 C 1.46894 * 111.00323 * 275.00018 * 17 2 1 19 19 C 1.50704 * 109.47000 * 180.02562 * 18 17 2 20 20 O 1.21289 * 120.00152 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99701 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99951 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00033 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99872 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00036 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99705 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47311 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47179 * 120.00236 * 26 24 22 29 29 H 1.48497 * 109.46963 * 239.99801 * 26 24 22 30 30 H 1.08999 * 109.47543 * 300.00453 * 1 2 3 31 31 H 1.09003 * 109.47054 * 60.00029 * 1 2 3 32 32 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46701 * 55.00296 * 4 2 1 34 34 H 1.08998 * 109.47313 * 295.00472 * 4 2 1 35 35 H 1.09002 * 109.47301 * 179.97438 * 7 5 4 36 36 H 1.09001 * 109.47449 * 300.00849 * 7 5 4 37 37 H 1.08998 * 109.46695 * 60.00322 * 7 5 4 38 38 H 0.96998 * 120.00146 * 335.00210 * 8 5 4 39 39 H 1.08004 * 126.82773 * 0.24575 * 12 11 9 40 40 H 1.07996 * 125.56731 * 179.97438 * 13 12 11 41 41 H 1.08992 * 109.47490 * 89.96964 * 15 14 13 42 42 H 1.09004 * 109.46867 * 209.97199 * 15 14 13 43 43 H 1.09003 * 109.47012 * 329.96775 * 15 14 13 44 44 H 1.08005 * 125.80320 * 180.02562 * 16 14 13 45 45 H 1.00905 * 110.99749 * 38.95826 * 17 2 1 46 46 H 1.09001 * 109.46853 * 300.00136 * 18 17 2 47 47 H 1.09005 * 109.47294 * 59.99995 * 18 17 2 48 48 H 0.97006 * 119.99937 * 0.02562 * 21 19 18 49 49 H 0.96997 * 119.99750 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 1 3.9953 -0.9924 -0.3866 7 6 4.0852 -1.4386 -2.4922 8 7 3.9480 0.7892 -1.4923 9 6 5.1612 1.2133 -1.0866 10 8 5.9381 0.4315 -0.5723 11 6 5.5461 2.6234 -1.2658 12 6 4.7348 3.6898 -1.8627 13 6 5.4844 4.8055 -1.8177 14 7 6.6855 4.5069 -1.2434 15 6 7.7688 5.4677 -1.0209 16 6 6.7324 3.2033 -0.9093 17 7 2.0195 -0.6924 1.1996 18 6 2.0823 0.2227 2.3469 19 6 2.5882 -0.5215 3.5558 20 8 2.8694 -1.6982 3.4699 21 7 2.7293 0.1209 4.7322 22 6 3.1891 -0.5561 5.8322 23 1 3.4386 -1.6040 5.7559 24 6 3.3340 0.1061 7.0451 25 7 3.0309 1.3814 7.1378 26 14 3.9612 -0.8162 8.5436 27 1 4.2307 -2.2299 8.1777 28 1 5.2146 -0.1827 9.0260 29 1 2.9373 -0.7690 9.6182 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6054 -0.2619 -2.1369 34 1 1.7516 -1.7716 -1.2054 35 1 5.1715 -1.3613 -2.5383 36 1 3.8000 -2.4822 -2.3592 37 1 3.6547 -1.0596 -3.4191 38 1 3.3285 1.4127 -1.9028 39 1 3.7329 3.5982 -2.2556 40 1 5.1848 5.7785 -2.1781 41 1 7.6500 5.9288 -0.0404 42 1 8.7276 4.9510 -1.0656 43 1 7.7351 6.2382 -1.7912 44 1 7.5652 2.7011 -0.4394 45 1 1.4494 -1.4979 1.4101 46 1 2.7587 1.0462 2.1182 47 1 1.0869 0.6165 2.5525 48 1 2.5048 1.0622 4.8009 49 1 3.1317 1.8435 7.9847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134082822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:19 Heat of formation + Delta-G solvation = -30.149831 kcal Electronic energy + Delta-G solvation = -29175.472822 eV Core-core repulsion = 25138.118877 eV Total energy + Delta-G solvation = -4037.353945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31488 -39.28826 -38.27620 -37.02146 -34.86812 -33.78231 -33.06532 -31.43369 -31.05293 -30.16693 -29.21850 -26.84924 -26.72296 -26.10097 -23.85090 -23.04990 -21.21967 -20.55461 -20.02245 -19.66604 -19.13607 -18.02692 -17.78174 -16.14087 -15.95537 -15.64656 -15.55036 -15.21798 -14.64935 -14.57474 -14.44413 -14.27022 -13.83161 -13.75990 -13.50822 -13.32571 -13.25040 -13.01574 -12.76610 -12.64261 -12.51960 -12.23058 -12.17481 -12.06392 -12.00172 -11.82989 -11.48081 -11.34656 -11.00043 -10.97023 -10.71403 -10.57992 -10.28034 -10.14170 -9.61374 -9.43285 -8.86521 -8.70471 -8.41294 -8.34103 -7.90643 -7.84589 -6.33586 -3.73670 1.81020 2.29879 2.63493 3.22143 3.31888 3.40077 3.56236 3.77953 4.01959 4.19245 4.43441 4.45353 4.71351 4.74184 4.80384 4.86673 5.04298 5.06334 5.20070 5.25530 5.29395 5.32819 5.35028 5.45620 5.48001 5.59826 5.65957 5.76045 5.77887 5.83978 5.89168 5.93001 5.94426 6.07061 6.18614 6.19428 6.33534 6.39089 6.54859 6.61273 6.80309 6.90350 7.05227 7.37879 7.63441 7.81779 7.84176 8.15910 8.62211 8.70955 9.26970 9.64209 10.16304 10.84567 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008317 B = 0.003159 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.954710 B = 8861.730665 C =10988.920890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.081 3.919 3 H 0.077 0.923 4 C -0.111 4.111 5 C 0.145 3.855 6 H 0.110 0.890 7 C -0.161 4.161 8 N -0.719 5.719 9 C 0.590 3.410 10 O -0.545 6.545 11 C -0.230 4.230 12 C -0.171 4.171 13 C -0.020 4.020 14 N -0.449 5.449 15 C 0.069 3.931 16 C 0.073 3.927 17 N -0.659 5.659 18 C 0.053 3.947 19 C 0.444 3.556 20 O -0.581 6.581 21 N -0.567 5.567 22 C -0.295 4.295 23 H 0.103 0.897 24 C 0.020 3.980 25 N -0.904 5.904 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.393 0.607 39 H 0.143 0.857 40 H 0.165 0.835 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.174 0.826 45 H 0.348 0.652 46 H 0.083 0.917 47 H 0.041 0.959 48 H 0.391 0.609 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 10.321 -22.537 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.029 4.029 3 H 0.095 0.905 4 C -0.150 4.150 5 C 0.041 3.959 6 H 0.128 0.872 7 C -0.220 4.220 8 N -0.370 5.370 9 C 0.378 3.622 10 O -0.423 6.423 11 C -0.240 4.240 12 C -0.195 4.195 13 C -0.146 4.146 14 N -0.125 5.125 15 C -0.073 4.073 16 C -0.062 4.062 17 N -0.291 5.291 18 C -0.079 4.079 19 C 0.230 3.770 20 O -0.465 6.465 21 N -0.204 5.204 22 C -0.425 4.425 23 H 0.121 0.879 24 C -0.181 4.181 25 N -0.546 5.546 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.209 1.209 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.226 0.774 39 H 0.161 0.839 40 H 0.182 0.818 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.192 0.808 45 H 0.168 0.832 46 H 0.101 0.899 47 H 0.059 0.941 48 H 0.224 0.776 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.579 9.399 -22.164 24.212 hybrid contribution -1.160 0.869 0.901 1.707 sum 1.419 10.268 -21.263 23.655 Atomic orbital electron populations 1.22541 0.97649 1.02157 1.01940 1.21601 0.91933 0.98294 0.91108 0.90486 1.21857 0.94561 1.01900 0.96669 1.20957 0.94282 0.80471 1.00196 0.87245 1.22180 1.01825 1.00021 0.97945 1.45800 1.16660 1.11210 1.63283 1.17326 0.81571 0.86123 0.77181 1.90805 1.51378 1.56189 1.43939 1.20432 0.96676 0.93931 1.12971 1.21998 0.99762 0.91802 1.05922 1.21704 0.86457 1.00238 1.06227 1.43610 1.13786 1.08387 1.46672 1.22121 0.89366 0.92640 1.03169 1.21836 0.99785 0.83098 1.01459 1.60142 1.57480 1.08960 1.02477 1.21658 0.99538 0.95768 0.90967 1.19843 0.84840 0.88220 0.84143 1.90520 1.55054 1.16321 1.84586 1.41865 1.58071 1.12410 1.08005 1.19758 1.39552 0.96432 0.86730 0.87916 1.25241 0.97835 0.95774 0.99209 1.69627 1.49179 1.08850 1.26926 0.85814 0.78199 0.79691 0.80740 1.19211 1.20805 1.20855 0.92608 0.92393 0.92372 0.91737 0.90307 0.92333 0.91824 0.93217 0.77394 0.83894 0.81809 0.90520 0.89590 0.89710 0.80842 0.83232 0.89899 0.94142 0.77566 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 9.16 37.16 0.34 -1.59 16 2 C 0.08 1.00 2.53 -67.71 -0.17 0.83 16 3 H 0.08 0.96 7.28 -51.93 -0.38 0.59 16 4 C -0.11 -1.19 4.43 -26.73 -0.12 -1.31 16 5 C 0.15 1.90 2.52 -67.93 -0.17 1.73 16 6 H 0.11 1.95 7.05 -51.93 -0.37 1.58 16 7 C -0.16 -1.88 9.48 37.16 0.35 -1.53 16 8 N -0.72 -8.92 4.44 -54.93 -0.24 -9.17 16 9 C 0.59 9.16 7.77 -12.59 -0.10 9.06 16 10 O -0.54 -10.87 16.58 5.26 0.09 -10.78 16 11 C -0.23 -3.02 6.29 -103.35 -0.65 -3.67 16 12 C -0.17 -1.70 10.56 -37.50 -0.40 -2.10 16 13 C -0.02 -0.17 11.34 -16.83 -0.19 -0.36 16 14 N -0.45 -4.06 3.09 -124.53 -0.38 -4.44 16 15 C 0.07 0.34 11.03 59.85 0.66 1.00 16 16 C 0.07 0.87 11.12 -16.84 -0.19 0.68 16 17 N -0.66 -10.99 5.24 -107.99 -0.57 -11.56 16 18 C 0.05 1.01 5.97 -4.98 -0.03 0.98 16 19 C 0.44 11.09 7.82 -10.98 -0.09 11.00 16 20 O -0.58 -16.54 15.78 5.55 0.09 -16.45 16 21 N -0.57 -15.10 5.29 -10.96 -0.06 -15.16 16 22 C -0.30 -8.58 9.68 -14.93 -0.14 -8.73 16 23 H 0.10 3.14 7.16 -52.49 -0.38 2.76 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -25.42 13.05 55.50 0.72 -24.69 16 26 Si 0.93 21.81 29.55 -169.99 -5.02 16.78 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.05 0.63 7.45 -51.93 -0.39 0.25 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.39 3.74 7.73 -40.82 -0.32 3.43 16 39 H 0.14 1.08 7.70 -52.48 -0.40 0.68 16 40 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.34 8.13 -51.93 -0.42 -0.08 16 43 H 0.08 0.25 8.13 -51.93 -0.42 -0.17 16 44 H 0.17 1.95 8.06 -52.48 -0.42 1.53 16 45 H 0.35 5.97 8.17 -39.29 -0.32 5.65 16 46 H 0.08 1.55 8.06 -51.93 -0.42 1.13 16 47 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 48 H 0.39 10.00 7.90 -40.82 -0.32 9.68 16 49 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 411.28 15.07 6.20 6.20 Total: -1.00 -36.86 411.28 -8.05 -44.90 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -7.88 Total: 17.90 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.99 Total: 6.47 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: -0.53 Total: -65.02 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: 0.17 Total: -27.24 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.86 -8.05 -44.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134082822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.755 kcal (2) G-P(sol) polarization free energy of solvation -36.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds