Wall clock time and date at job start Tue Mar 31 2020 20:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.52999 * 109.47267 * 239.99353 * 2 1 3 5 5 C 1.52999 * 109.47025 * 175.00200 * 4 2 1 6 6 H 1.08998 * 109.47048 * 55.00490 * 5 4 2 7 7 C 1.53001 * 109.47172 * 174.99952 * 5 4 2 8 8 N 1.46498 * 109.47306 * 295.00152 * 5 4 2 9 9 C 1.34773 * 119.99862 * 154.99889 * 8 5 4 10 10 O 1.21625 * 120.00426 * 0.02562 * 9 8 5 11 11 C 1.47264 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.46690 * 126.94505 * 0.02562 * 11 9 8 13 13 C 1.34485 * 106.33274 * 179.97438 * 12 11 9 14 14 N 1.36441 * 108.85689 * 0.02562 * 13 12 11 15 15 C 1.46506 * 124.84762 * 180.02562 * 14 13 12 16 16 C 1.34655 * 110.30291 * 359.97438 * 14 13 12 17 17 N 1.46905 * 109.46630 * 119.99471 * 2 1 3 18 18 C 1.46894 * 111.00323 * 275.00018 * 17 2 1 19 19 C 1.50704 * 109.47000 * 180.02562 * 18 17 2 20 20 O 1.21289 * 120.00152 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99701 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99951 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00033 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99872 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00036 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99705 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47311 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47179 * 120.00236 * 26 24 22 29 29 H 1.48497 * 109.46963 * 239.99801 * 26 24 22 30 30 H 1.08999 * 109.47543 * 300.00453 * 1 2 3 31 31 H 1.09003 * 109.47054 * 60.00029 * 1 2 3 32 32 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46701 * 55.00296 * 4 2 1 34 34 H 1.08998 * 109.47313 * 295.00472 * 4 2 1 35 35 H 1.09002 * 109.47301 * 179.97438 * 7 5 4 36 36 H 1.09001 * 109.47449 * 300.00849 * 7 5 4 37 37 H 1.08998 * 109.46695 * 60.00322 * 7 5 4 38 38 H 0.96998 * 120.00146 * 335.00210 * 8 5 4 39 39 H 1.08004 * 126.82773 * 0.24575 * 12 11 9 40 40 H 1.07996 * 125.56731 * 179.97438 * 13 12 11 41 41 H 1.08992 * 109.47490 * 89.96964 * 15 14 13 42 42 H 1.09004 * 109.46867 * 209.97199 * 15 14 13 43 43 H 1.09003 * 109.47012 * 329.96775 * 15 14 13 44 44 H 1.08005 * 125.80320 * 180.02562 * 16 14 13 45 45 H 1.00905 * 110.99749 * 38.95826 * 17 2 1 46 46 H 1.09001 * 109.46853 * 300.00136 * 18 17 2 47 47 H 1.09005 * 109.47294 * 59.99995 * 18 17 2 48 48 H 0.97006 * 119.99937 * 0.02562 * 21 19 18 49 49 H 0.96997 * 119.99750 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 1 3.9953 -0.9924 -0.3866 7 6 4.0852 -1.4386 -2.4922 8 7 3.9480 0.7892 -1.4923 9 6 5.1612 1.2133 -1.0866 10 8 5.9381 0.4315 -0.5723 11 6 5.5461 2.6234 -1.2658 12 6 4.7348 3.6898 -1.8627 13 6 5.4844 4.8055 -1.8177 14 7 6.6855 4.5069 -1.2434 15 6 7.7688 5.4677 -1.0209 16 6 6.7324 3.2033 -0.9093 17 7 2.0195 -0.6924 1.1996 18 6 2.0823 0.2227 2.3469 19 6 2.5882 -0.5215 3.5558 20 8 2.8694 -1.6982 3.4699 21 7 2.7293 0.1209 4.7322 22 6 3.1891 -0.5561 5.8322 23 1 3.4386 -1.6040 5.7559 24 6 3.3340 0.1061 7.0451 25 7 3.0309 1.3814 7.1378 26 14 3.9612 -0.8162 8.5436 27 1 4.2307 -2.2299 8.1777 28 1 5.2146 -0.1827 9.0260 29 1 2.9373 -0.7690 9.6182 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6054 -0.2619 -2.1369 34 1 1.7516 -1.7716 -1.2054 35 1 5.1715 -1.3613 -2.5383 36 1 3.8000 -2.4822 -2.3592 37 1 3.6547 -1.0596 -3.4191 38 1 3.3285 1.4127 -1.9028 39 1 3.7329 3.5982 -2.2556 40 1 5.1848 5.7785 -2.1781 41 1 7.6500 5.9288 -0.0404 42 1 8.7276 4.9510 -1.0656 43 1 7.7351 6.2382 -1.7912 44 1 7.5652 2.7011 -0.4394 45 1 1.4494 -1.4979 1.4101 46 1 2.7587 1.0462 2.1182 47 1 1.0869 0.6165 2.5525 48 1 2.5048 1.0622 4.8009 49 1 3.1317 1.8435 7.9847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134082822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:18 Heat of formation + Delta-G solvation = -57.814966 kcal Electronic energy + Delta-G solvation = -29176.672473 eV Core-core repulsion = 25138.118877 eV Total energy + Delta-G solvation = -4038.553596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08532 -40.46968 -40.08778 -38.32915 -36.23074 -35.78981 -33.82091 -33.31199 -32.45679 -31.28164 -30.00292 -27.96628 -27.63544 -27.38836 -25.68612 -24.00013 -22.20967 -21.52685 -21.11782 -20.92483 -20.57072 -19.93373 -18.82695 -17.78232 -17.12869 -16.91652 -16.51409 -16.40343 -16.27820 -16.05935 -15.58704 -15.53382 -15.28802 -14.97666 -14.74367 -14.43153 -14.31948 -13.94519 -13.87612 -13.59146 -13.53838 -13.33888 -13.27954 -13.12983 -13.01551 -12.98748 -12.85671 -12.80202 -12.63655 -12.42669 -12.13576 -11.99741 -11.69219 -11.61712 -11.52847 -10.84239 -10.36118 -10.03034 -9.97078 -9.45769 -9.24359 -9.19743 -8.48386 -5.97233 0.83604 1.34656 1.39107 1.54281 1.58537 1.97083 2.03381 2.28090 2.58612 2.70346 2.96813 3.18459 3.56131 3.77514 4.00074 4.04780 4.09887 4.13276 4.22901 4.34762 4.37654 4.43353 4.45835 4.48960 4.57286 4.59854 4.63712 4.65071 4.73849 4.81645 4.89297 4.93687 5.04484 5.05824 5.14703 5.22493 5.30684 5.37204 5.39104 5.46482 5.74886 5.82945 5.92424 6.10671 6.17655 6.39350 6.52182 6.58491 6.83326 7.10869 7.52711 7.53819 8.09798 8.69598 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008317 B = 0.003159 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.954710 B = 8861.730665 C =10988.920890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.081 3.919 3 H 0.077 0.923 4 C -0.101 4.101 5 C 0.145 3.855 6 H 0.055 0.945 7 C -0.154 4.154 8 N -0.701 5.701 9 C 0.580 3.420 10 O -0.606 6.606 11 C -0.262 4.262 12 C -0.179 4.179 13 C -0.010 4.010 14 N -0.445 5.445 15 C 0.061 3.939 16 C 0.053 3.947 17 N -0.676 5.676 18 C 0.072 3.928 19 C 0.437 3.563 20 O -0.622 6.622 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.266 1.266 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.410 0.590 39 H 0.168 0.832 40 H 0.204 0.796 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.165 0.835 45 H 0.344 0.656 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.395 0.605 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 12.745 -24.144 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.028 4.028 3 H 0.095 0.905 4 C -0.139 4.139 5 C 0.041 3.959 6 H 0.073 0.927 7 C -0.212 4.212 8 N -0.352 5.352 9 C 0.371 3.629 10 O -0.489 6.489 11 C -0.273 4.273 12 C -0.203 4.203 13 C -0.137 4.137 14 N -0.119 5.119 15 C -0.079 4.079 16 C -0.084 4.084 17 N -0.308 5.308 18 C -0.060 4.060 19 C 0.225 3.775 20 O -0.508 6.508 21 N -0.212 5.212 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.191 1.191 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.247 0.753 39 H 0.185 0.815 40 H 0.221 0.779 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.131 0.869 44 H 0.182 0.818 45 H 0.163 0.837 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.229 0.771 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.969 11.895 -23.811 26.635 hybrid contribution -0.639 0.181 1.353 1.507 sum 0.329 12.075 -22.458 25.501 Atomic orbital electron populations 1.22448 0.95512 1.02623 1.02899 1.21722 0.93559 0.97935 0.89591 0.90497 1.21833 0.92303 1.02448 0.97345 1.20845 0.95946 0.80784 0.98369 0.92662 1.22103 1.00128 1.00447 0.98551 1.45644 1.15997 1.11330 1.62246 1.17856 0.81756 0.86962 0.76365 1.90761 1.53254 1.57968 1.46937 1.20483 0.98289 0.93359 1.15154 1.22296 1.00852 0.91021 1.06105 1.22368 0.85575 1.01344 1.04427 1.43905 1.14894 1.07725 1.45371 1.22429 0.88524 0.92478 1.04517 1.21858 0.99593 0.84760 1.02198 1.60137 1.58721 1.09030 1.02944 1.21430 1.00373 0.95144 0.89069 1.20933 0.83370 0.88046 0.85174 1.90481 1.56514 1.18400 1.85420 1.41936 1.58437 1.12504 1.08279 1.19706 1.42204 0.95912 0.88569 0.90542 1.26060 0.97176 0.96662 1.01390 1.69682 1.48735 1.09680 1.28091 0.84864 0.78258 0.77970 0.77188 1.19926 1.19586 1.19137 0.93542 0.89491 0.92188 0.87744 0.89976 0.95068 0.91106 0.90338 0.75332 0.81502 0.77938 0.89957 0.88961 0.86881 0.81761 0.83728 0.89675 0.91578 0.77131 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 9.16 71.98 0.66 -2.51 16 2 C 0.08 1.86 2.53 44.91 0.11 1.98 16 3 H 0.08 1.78 7.28 -2.39 -0.02 1.76 16 4 C -0.10 -1.95 4.43 30.59 0.14 -1.81 16 5 C 0.15 3.84 2.52 44.99 0.11 3.95 16 6 H 0.06 2.11 7.05 -2.39 -0.02 2.10 16 7 C -0.15 -3.58 9.48 71.98 0.68 -2.89 16 8 N -0.70 -17.37 4.44 -445.96 -1.98 -19.35 16 9 C 0.58 19.03 7.77 86.62 0.67 19.70 16 10 O -0.61 -26.44 16.58 -4.11 -0.07 -26.50 16 11 C -0.26 -7.01 6.29 -19.04 -0.12 -7.13 16 12 C -0.18 -3.24 10.56 23.62 0.25 -2.99 16 13 C -0.01 -0.15 11.34 83.12 0.94 0.79 16 14 N -0.44 -7.40 3.09 -547.89 -1.69 -9.09 16 15 C 0.06 0.48 11.03 127.77 1.41 1.89 16 16 C 0.05 1.30 11.12 83.92 0.93 2.23 16 17 N -0.68 -22.81 5.24 -495.57 -2.60 -25.40 16 18 C 0.07 2.77 5.97 85.56 0.51 3.28 16 19 C 0.44 22.68 7.82 87.66 0.69 23.37 16 20 O -0.62 -37.19 15.78 -3.06 -0.05 -37.23 16 21 N -0.57 -31.70 5.29 -306.98 -1.62 -33.32 16 22 C -0.33 -20.15 9.68 84.04 0.81 -19.34 16 23 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 24 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 25 N -0.92 -51.69 13.05 21.66 0.28 -51.41 16 26 Si 0.99 44.91 29.55 68.60 2.03 46.94 16 27 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 29 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 30 H 0.05 0.94 7.45 -2.39 -0.02 0.92 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.41 7.06 7.73 -92.71 -0.72 6.34 16 39 H 0.17 2.00 7.70 -2.91 -0.02 1.97 16 40 H 0.20 1.23 8.06 -2.91 -0.02 1.20 16 41 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.09 0.62 8.13 -2.39 -0.02 0.60 16 43 H 0.11 0.28 8.13 -2.39 -0.02 0.26 16 44 H 0.17 4.13 8.06 -2.91 -0.02 4.11 16 45 H 0.34 11.99 8.17 -89.69 -0.73 11.25 16 46 H 0.09 3.22 8.06 -2.39 -0.02 3.20 16 47 H 0.07 2.19 7.44 -2.38 -0.02 2.17 16 48 H 0.40 20.73 7.90 -92.70 -0.73 20.00 16 49 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -86.30 411.28 1.36 -84.94 By element: Atomic # 1 Polarization: 51.39 SS G_CDS: -1.20 Total: 50.19 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 8.27 Total: 20.24 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -7.61 Total: -138.57 kcal Atomic # 8 Polarization: -63.62 SS G_CDS: -0.12 Total: -63.74 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -86.30 1.36 -84.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134082822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.121 kcal (2) G-P(sol) polarization free energy of solvation -86.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds