Wall clock time and date at job start Tue Mar 31 2020 20:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47309 * 2 1 4 4 O 1.42901 * 109.47196 * 120.00228 * 2 1 3 5 5 C 1.35480 * 117.00315 * 90.00262 * 4 2 1 6 6 C 1.39637 * 119.97904 * 180.02562 * 5 4 2 7 7 N 1.31528 * 120.03726 * 179.97438 * 6 5 4 8 8 C 1.33209 * 119.99085 * 0.02562 * 7 6 5 9 9 C 1.47907 * 120.02319 * 179.97438 * 8 7 6 10 10 O 1.21546 * 120.00311 * 180.02562 * 9 8 7 11 11 N 1.34781 * 120.00019 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99874 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47391 * 325.00213 * 12 11 9 14 14 C 1.53000 * 109.46840 * 85.00543 * 12 11 9 15 15 C 1.53002 * 109.46799 * 205.00309 * 12 11 9 16 16 C 1.52997 * 109.47469 * 65.00172 * 15 12 11 17 17 H 1.09009 * 109.46733 * 54.99988 * 16 15 12 18 18 C 1.52993 * 109.47392 * 174.99649 * 16 15 12 19 19 N 1.46496 * 109.47117 * 295.00217 * 16 15 12 20 20 C 1.36935 * 120.00076 * 154.99717 * 19 16 15 21 21 H 1.07998 * 120.00422 * 0.02562 * 20 19 16 22 22 C 1.38814 * 119.99949 * 179.97438 * 20 19 16 23 23 N 1.31625 * 120.00164 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47206 * 90.00126 * 24 22 20 26 26 H 1.48498 * 109.47311 * 210.00097 * 24 22 20 27 27 H 1.48505 * 109.47057 * 330.00096 * 24 22 20 28 28 C 1.39384 * 119.95380 * 0.27171 * 8 7 6 29 29 N 1.32085 * 119.96121 * 359.43453 * 28 8 7 30 30 H 1.08994 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47075 * 299.99976 * 1 2 3 32 32 H 1.08998 * 109.47010 * 60.00367 * 1 2 3 33 33 H 1.09010 * 109.47395 * 240.00242 * 2 1 3 34 34 H 1.09000 * 109.47424 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47413 * 300.00175 * 3 2 1 36 36 H 1.09006 * 109.47145 * 59.99665 * 3 2 1 37 37 H 1.08002 * 119.98065 * 359.95185 * 6 5 4 38 38 H 0.97002 * 119.99716 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.47194 * 299.99493 * 14 12 11 40 40 H 1.08992 * 109.47399 * 59.99666 * 14 12 11 41 41 H 1.09004 * 109.46724 * 180.02562 * 14 12 11 42 42 H 1.09008 * 109.46873 * 185.00266 * 15 12 11 43 43 H 1.08997 * 109.47047 * 304.99955 * 15 12 11 44 44 H 1.08993 * 109.47489 * 180.02562 * 18 16 15 45 45 H 1.09005 * 109.47082 * 300.00404 * 18 16 15 46 46 H 1.08999 * 109.46971 * 59.99914 * 18 16 15 47 47 H 0.97002 * 119.99662 * 334.99359 * 19 16 15 48 48 H 0.96999 * 120.00139 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.02020 * 179.72667 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2114 -2.0090 1.0654 6 6 2.6758 -2.7293 2.1678 7 7 2.8748 -4.0258 2.0709 8 6 2.6338 -4.6522 0.9202 9 6 2.8580 -6.1101 0.8102 10 8 2.6384 -6.6812 -0.2400 11 7 3.3066 -6.8051 1.8742 12 6 3.5281 -8.2492 1.7654 13 1 2.7772 -8.6832 1.1051 14 6 4.9227 -8.5095 1.1924 15 6 3.4188 -8.8877 3.1515 16 6 1.9880 -8.7358 3.6717 17 1 1.2909 -9.1529 2.9448 18 6 1.8464 -9.4815 5.0000 19 7 1.6904 -7.3158 3.8746 20 6 0.3946 -6.8751 3.8332 21 1 -0.4081 -7.5743 3.6514 22 6 0.1126 -5.5296 4.0260 23 7 1.0908 -4.6774 4.2481 24 14 -1.6551 -4.9285 3.9703 25 1 -2.2425 -4.9914 5.3328 26 1 -1.6860 -3.5263 3.4823 27 1 -2.4421 -5.7898 3.0516 28 6 2.1763 -3.9319 -0.1818 29 7 1.9715 -2.6309 -0.0807 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 2.8719 -2.2214 3.1006 38 1 3.4822 -6.3493 2.7123 39 1 5.0005 -8.0545 0.2050 40 1 5.6735 -8.0755 1.8526 41 1 5.0873 -9.5839 1.1110 42 1 3.6706 -9.9462 3.0847 43 1 4.1084 -8.3926 3.8350 44 1 0.8270 -9.3736 5.3704 45 1 2.0678 -10.5381 4.8490 46 1 2.5435 -9.0645 5.7269 47 1 2.4114 -6.6878 4.0383 48 1 0.8938 -3.7372 4.3825 49 1 1.9848 -4.4379 -1.1165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134376649.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:24 Heat of formation + Delta-G solvation = -14.236882 kcal Electronic energy + Delta-G solvation = -30788.110142 eV Core-core repulsion = 26751.446234 eV Total energy + Delta-G solvation = -4036.663908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.98136 -39.30770 -38.29778 -36.69710 -34.17301 -33.81788 -33.27539 -32.12972 -30.89993 -29.78056 -28.43990 -27.36314 -26.30556 -24.89085 -24.25462 -23.58233 -21.70290 -21.17295 -20.17934 -19.73084 -18.39490 -17.67538 -17.13569 -17.02003 -15.82503 -15.68017 -14.95512 -14.69693 -14.64143 -14.56645 -14.21420 -13.89202 -13.72050 -13.58830 -13.22997 -12.91462 -12.75857 -12.67356 -12.45855 -12.42063 -12.11479 -12.00491 -11.87541 -11.70467 -11.62345 -11.36915 -11.07348 -10.94770 -10.83830 -10.72072 -10.68023 -10.54079 -10.33906 -10.22421 -9.86697 -9.68866 -9.58171 -8.89785 -8.71120 -8.46212 -8.20492 -6.85373 -5.68616 -2.95116 0.96626 1.55048 2.98424 3.32287 3.42297 3.48615 3.50627 3.74700 4.29857 4.34543 4.61598 4.66258 4.75302 4.88335 4.89131 5.12922 5.16083 5.36091 5.43104 5.46599 5.53177 5.56365 5.62239 5.63357 5.71635 5.72689 5.73384 5.92288 5.93207 5.98902 6.01079 6.05234 6.14658 6.18138 6.28516 6.38169 6.42302 6.47540 6.59190 6.65570 6.89897 7.09331 7.19049 7.26950 7.53875 7.76655 8.03858 8.32114 8.46118 8.86621 9.58358 10.13580 10.49330 11.49554 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.004401 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.526203 B = 6360.679005 C = 7975.890391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.293 6.293 5 C 0.280 3.720 6 C 0.063 3.937 7 N -0.314 5.314 8 C -0.006 4.006 9 C 0.592 3.408 10 O -0.561 6.561 11 N -0.675 5.675 12 C 0.148 3.852 13 H 0.084 0.916 14 C -0.162 4.162 15 C -0.134 4.134 16 C 0.169 3.831 17 H 0.046 0.954 18 C -0.163 4.163 19 N -0.714 5.714 20 C -0.232 4.232 21 H 0.063 0.937 22 C -0.005 4.005 23 N -0.905 5.905 24 Si 0.888 3.112 25 H -0.292 1.292 26 H -0.296 1.296 27 H -0.286 1.286 28 C 0.137 3.863 29 N -0.510 5.510 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.175 0.825 38 H 0.415 0.585 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.045 0.955 47 H 0.381 0.619 48 H 0.249 0.751 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.129 4.362 -6.553 10.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 C -0.206 4.206 4 O -0.199 6.199 5 C 0.097 3.903 6 C -0.104 4.104 7 N -0.031 5.031 8 C -0.146 4.146 9 C 0.376 3.624 10 O -0.440 6.440 11 N -0.326 5.326 12 C 0.043 3.957 13 H 0.102 0.898 14 C -0.221 4.221 15 C -0.172 4.172 16 C 0.059 3.941 17 H 0.064 0.936 18 C -0.223 4.223 19 N -0.358 5.358 20 C -0.364 4.364 21 H 0.081 0.919 22 C -0.202 4.202 23 N -0.553 5.553 24 Si 0.720 3.280 25 H -0.220 1.220 26 H -0.222 1.222 27 H -0.212 1.212 28 C -0.022 4.022 29 N -0.239 5.239 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.192 0.808 38 H 0.255 0.745 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.216 0.784 48 H 0.059 0.941 49 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.837 4.140 -7.087 10.682 hybrid contribution -1.252 0.866 0.437 1.584 sum 5.585 5.006 -6.650 10.023 Atomic orbital electron populations 1.22219 0.94868 1.03172 1.02462 1.22370 0.94511 0.92788 0.88116 1.21894 1.01899 0.93901 1.02912 1.86287 1.79572 1.15575 1.38453 1.21336 0.91763 0.85417 0.91792 1.22861 1.00477 0.89509 0.97579 1.68507 1.07316 1.06877 1.20398 1.21891 1.04940 0.96351 0.91373 1.17334 0.76550 0.84644 0.83823 1.90704 1.54010 1.70061 1.29254 1.45817 1.64325 1.07959 1.14531 1.20867 0.96529 0.81036 0.97266 0.89799 1.22207 0.97125 1.01359 1.01363 1.22213 0.99258 1.00353 0.95396 1.20273 0.92631 0.87176 0.94036 0.93572 1.22421 1.01696 0.97939 1.00268 1.42451 1.05936 1.01703 1.85720 1.19078 0.84639 0.91830 1.40839 0.91856 1.24566 0.96160 0.96215 1.03242 1.69674 1.28660 1.01979 1.54970 0.86488 0.86220 0.77856 0.77458 1.21964 1.22229 1.21203 1.23321 0.91173 0.87981 0.99702 1.68030 1.19993 1.11147 1.24780 0.91870 0.91900 0.91195 0.89315 0.91830 0.90629 0.91569 0.80843 0.74519 0.92383 0.92733 0.92060 0.90788 0.91667 0.92946 0.94690 0.93617 0.78377 0.94071 0.80756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.53 37.16 0.35 -1.72 16 2 C 0.08 0.98 3.11 -26.73 -0.08 0.90 16 3 C -0.15 -1.39 9.56 37.15 0.36 -1.03 16 4 O -0.29 -4.51 9.76 -18.13 -0.18 -4.69 16 5 C 0.28 4.82 7.47 -16.71 -0.12 4.70 16 6 C 0.06 1.13 11.18 -17.16 -0.19 0.94 16 7 N -0.31 -6.17 8.67 -9.49 -0.08 -6.26 16 8 C -0.01 -0.12 6.74 -82.88 -0.56 -0.68 16 9 C 0.59 11.94 7.77 -12.30 -0.10 11.84 16 10 O -0.56 -12.03 16.00 5.33 0.09 -11.94 16 11 N -0.67 -12.46 3.79 -54.73 -0.21 -12.67 16 12 C 0.15 2.38 2.57 -67.93 -0.17 2.21 16 13 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 14 C -0.16 -2.16 9.48 37.16 0.35 -1.81 16 15 C -0.13 -2.01 4.43 -26.73 -0.12 -2.13 16 16 C 0.17 3.15 2.89 -67.94 -0.20 2.96 16 17 H 0.05 0.93 8.08 -51.92 -0.42 0.51 16 18 C -0.16 -2.81 9.49 37.15 0.35 -2.46 16 19 N -0.71 -16.19 3.84 -53.43 -0.21 -16.40 16 20 C -0.23 -6.09 9.93 -15.06 -0.15 -6.24 16 21 H 0.06 1.71 7.83 -52.49 -0.41 1.29 16 22 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 23 N -0.91 -23.87 12.03 55.49 0.67 -23.20 16 24 Si 0.89 22.29 29.55 -169.99 -5.02 17.26 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 C 0.14 2.46 10.76 -17.02 -0.18 2.28 16 29 N -0.51 -8.82 8.80 -12.76 -0.11 -8.93 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.15 6.99 -51.92 -0.36 0.78 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.17 2.85 8.06 -52.49 -0.42 2.43 16 38 H 0.42 8.03 5.85 -40.82 -0.24 7.79 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.38 8.91 5.70 -40.82 -0.23 8.68 16 48 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 49 H 0.18 2.85 7.64 -52.49 -0.40 2.45 16 LS Contribution 404.22 15.07 6.09 6.09 Total: -1.00 -28.93 404.22 -7.46 -36.39 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -7.94 Total: 14.82 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -0.56 Total: 9.52 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: 0.06 Total: -67.46 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.09 Total: -16.63 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.93 -7.46 -36.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134376649.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.151 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds