Wall clock time and date at job start Tue Mar 31 2020 20:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47309 * 2 1 4 4 O 1.42901 * 109.47196 * 120.00228 * 2 1 3 5 5 C 1.35480 * 117.00315 * 90.00262 * 4 2 1 6 6 C 1.39637 * 119.97904 * 180.02562 * 5 4 2 7 7 N 1.31528 * 120.03726 * 179.97438 * 6 5 4 8 8 C 1.33209 * 119.99085 * 0.02562 * 7 6 5 9 9 C 1.47907 * 120.02319 * 179.97438 * 8 7 6 10 10 O 1.21546 * 120.00311 * 180.02562 * 9 8 7 11 11 N 1.34781 * 120.00019 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99874 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47391 * 325.00213 * 12 11 9 14 14 C 1.53000 * 109.46840 * 85.00543 * 12 11 9 15 15 C 1.53002 * 109.46799 * 205.00309 * 12 11 9 16 16 C 1.52997 * 109.47469 * 65.00172 * 15 12 11 17 17 H 1.09009 * 109.46733 * 54.99988 * 16 15 12 18 18 C 1.52993 * 109.47392 * 174.99649 * 16 15 12 19 19 N 1.46496 * 109.47117 * 295.00217 * 16 15 12 20 20 C 1.36935 * 120.00076 * 154.99717 * 19 16 15 21 21 H 1.07998 * 120.00422 * 0.02562 * 20 19 16 22 22 C 1.38814 * 119.99949 * 179.97438 * 20 19 16 23 23 N 1.31625 * 120.00164 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47206 * 90.00126 * 24 22 20 26 26 H 1.48498 * 109.47311 * 210.00097 * 24 22 20 27 27 H 1.48505 * 109.47057 * 330.00096 * 24 22 20 28 28 C 1.39384 * 119.95380 * 0.27171 * 8 7 6 29 29 N 1.32085 * 119.96121 * 359.43453 * 28 8 7 30 30 H 1.08994 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47075 * 299.99976 * 1 2 3 32 32 H 1.08998 * 109.47010 * 60.00367 * 1 2 3 33 33 H 1.09010 * 109.47395 * 240.00242 * 2 1 3 34 34 H 1.09000 * 109.47424 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47413 * 300.00175 * 3 2 1 36 36 H 1.09006 * 109.47145 * 59.99665 * 3 2 1 37 37 H 1.08002 * 119.98065 * 359.95185 * 6 5 4 38 38 H 0.97002 * 119.99716 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.47194 * 299.99493 * 14 12 11 40 40 H 1.08992 * 109.47399 * 59.99666 * 14 12 11 41 41 H 1.09004 * 109.46724 * 180.02562 * 14 12 11 42 42 H 1.09008 * 109.46873 * 185.00266 * 15 12 11 43 43 H 1.08997 * 109.47047 * 304.99955 * 15 12 11 44 44 H 1.08993 * 109.47489 * 180.02562 * 18 16 15 45 45 H 1.09005 * 109.47082 * 300.00404 * 18 16 15 46 46 H 1.08999 * 109.46971 * 59.99914 * 18 16 15 47 47 H 0.97002 * 119.99662 * 334.99359 * 19 16 15 48 48 H 0.96999 * 120.00139 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.02020 * 179.72667 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2114 -2.0090 1.0654 6 6 2.6758 -2.7293 2.1678 7 7 2.8748 -4.0258 2.0709 8 6 2.6338 -4.6522 0.9202 9 6 2.8580 -6.1101 0.8102 10 8 2.6384 -6.6812 -0.2400 11 7 3.3066 -6.8051 1.8742 12 6 3.5281 -8.2492 1.7654 13 1 2.7772 -8.6832 1.1051 14 6 4.9227 -8.5095 1.1924 15 6 3.4188 -8.8877 3.1515 16 6 1.9880 -8.7358 3.6717 17 1 1.2909 -9.1529 2.9448 18 6 1.8464 -9.4815 5.0000 19 7 1.6904 -7.3158 3.8746 20 6 0.3946 -6.8751 3.8332 21 1 -0.4081 -7.5743 3.6514 22 6 0.1126 -5.5296 4.0260 23 7 1.0908 -4.6774 4.2481 24 14 -1.6551 -4.9285 3.9703 25 1 -2.2425 -4.9914 5.3328 26 1 -1.6860 -3.5263 3.4823 27 1 -2.4421 -5.7898 3.0516 28 6 2.1763 -3.9319 -0.1818 29 7 1.9715 -2.6309 -0.0807 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 2.8719 -2.2214 3.1006 38 1 3.4822 -6.3493 2.7123 39 1 5.0005 -8.0545 0.2050 40 1 5.6735 -8.0755 1.8526 41 1 5.0873 -9.5839 1.1110 42 1 3.6706 -9.9462 3.0847 43 1 4.1084 -8.3926 3.8350 44 1 0.8270 -9.3736 5.3704 45 1 2.0678 -10.5381 4.8490 46 1 2.5435 -9.0645 5.7269 47 1 2.4114 -6.6878 4.0383 48 1 0.8938 -3.7372 4.3825 49 1 1.9848 -4.4379 -1.1165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134376649.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:24 Heat of formation + Delta-G solvation = -33.008326 kcal Electronic energy + Delta-G solvation = -30788.924133 eV Core-core repulsion = 26751.446234 eV Total energy + Delta-G solvation = -4037.477899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.36706 -40.71754 -39.59222 -38.22172 -35.77108 -35.22691 -34.35096 -33.88418 -32.35411 -31.20125 -30.10510 -28.23331 -27.56488 -26.25885 -25.65454 -25.49240 -22.99077 -22.35689 -21.63004 -21.21412 -19.63551 -19.10325 -19.00952 -18.47306 -17.19771 -17.01698 -16.60153 -16.19721 -15.99893 -15.88059 -15.53431 -15.50945 -15.22452 -15.08284 -14.48140 -14.32594 -14.11899 -14.05680 -13.55336 -13.42945 -13.29006 -13.25974 -13.17350 -13.00449 -12.89964 -12.77863 -12.69809 -12.61724 -12.29969 -12.20730 -12.15571 -11.85414 -11.72932 -11.68082 -11.54760 -11.37512 -11.18834 -10.82419 -10.14100 -9.93016 -9.61004 -8.72717 -7.73227 -4.96189 -0.46579 0.12898 1.38029 1.42508 1.45012 1.76395 1.82461 2.34054 2.59625 2.88885 2.97801 3.22535 3.48720 3.55070 3.83460 3.85323 3.95513 3.98641 4.11017 4.19301 4.21806 4.23457 4.42709 4.55799 4.60162 4.61042 4.69891 4.74151 4.76244 4.84134 4.87722 4.91244 4.96117 5.08543 5.11985 5.17184 5.18456 5.19833 5.23413 5.40812 5.45845 5.65289 5.66885 5.77882 5.99623 6.13932 6.43551 6.58203 6.84397 7.34728 7.53552 8.27382 8.54490 9.42883 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.004401 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.526203 B = 6360.679005 C = 7975.890391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.069 3.931 3 C -0.142 4.142 4 O -0.296 6.296 5 C 0.287 3.713 6 C 0.052 3.948 7 N -0.328 5.328 8 C -0.029 4.029 9 C 0.584 3.416 10 O -0.583 6.583 11 N -0.671 5.671 12 C 0.143 3.857 13 H 0.062 0.938 14 C -0.151 4.151 15 C -0.120 4.120 16 C 0.161 3.839 17 H 0.028 0.972 18 C -0.153 4.153 19 N -0.718 5.718 20 C -0.234 4.234 21 H 0.049 0.951 22 C -0.040 4.040 23 N -0.905 5.905 24 Si 0.924 3.076 25 H -0.293 1.293 26 H -0.305 1.305 27 H -0.292 1.292 28 C 0.138 3.862 29 N -0.508 5.508 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.186 0.814 38 H 0.411 0.589 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.027 0.973 45 H 0.069 0.931 46 H 0.047 0.953 47 H 0.377 0.623 48 H 0.243 0.757 49 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.250 4.400 -6.671 11.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.013 3.987 3 C -0.199 4.199 4 O -0.201 6.201 5 C 0.103 3.897 6 C -0.116 4.116 7 N -0.045 5.045 8 C -0.168 4.168 9 C 0.369 3.631 10 O -0.464 6.464 11 N -0.321 5.321 12 C 0.039 3.961 13 H 0.080 0.920 14 C -0.209 4.209 15 C -0.158 4.158 16 C 0.053 3.947 17 H 0.046 0.954 18 C -0.213 4.213 19 N -0.361 5.361 20 C -0.367 4.367 21 H 0.067 0.933 22 C -0.236 4.236 23 N -0.554 5.554 24 Si 0.757 3.243 25 H -0.221 1.221 26 H -0.233 1.233 27 H -0.219 1.219 28 C -0.021 4.021 29 N -0.238 5.238 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.203 0.797 38 H 0.250 0.750 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.129 0.871 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.212 0.788 48 H 0.053 0.947 49 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 7.970 4.145 -7.195 11.510 hybrid contribution -1.637 0.894 0.443 1.917 sum 6.333 5.038 -6.752 10.540 Atomic orbital electron populations 1.22222 0.94652 1.01623 1.03950 1.22736 0.94786 0.94316 0.86862 1.21903 1.02116 0.91512 1.04336 1.86304 1.79227 1.14489 1.40092 1.21407 0.90630 0.86233 0.91425 1.23099 1.00777 0.89318 0.98413 1.68432 1.07778 1.07646 1.20606 1.21952 1.06411 0.96388 0.92031 1.17527 0.76550 0.85069 0.83960 1.90673 1.55245 1.70563 1.29954 1.45907 1.63470 1.08937 1.13756 1.21058 0.97698 0.79585 0.97796 0.92012 1.22107 0.95235 1.03190 1.00412 1.22135 0.96640 1.02633 0.94408 1.20489 0.94674 0.84985 0.94575 0.95373 1.22269 1.00244 0.99855 0.98928 1.42482 1.04433 1.03463 1.85743 1.19117 0.85922 0.91603 1.40056 0.93252 1.24912 0.97605 0.96710 1.04422 1.69733 1.28608 1.01474 1.55581 0.85920 0.84732 0.76683 0.76948 1.22054 1.23283 1.21886 1.23513 0.90501 0.88240 0.99800 1.68107 1.20050 1.10772 1.24848 0.94835 0.91814 0.88353 0.89737 0.91509 0.88022 0.91286 0.79691 0.74987 0.93945 0.91524 0.89260 0.87079 0.90723 0.95412 0.91258 0.93423 0.78819 0.94685 0.79598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 9.53 71.98 0.69 -3.20 16 2 C 0.07 1.63 3.11 30.59 0.10 1.72 16 3 C -0.14 -2.30 9.56 71.98 0.69 -1.61 16 4 O -0.30 -8.90 9.76 -87.79 -0.86 -9.76 16 5 C 0.29 9.87 7.47 84.92 0.63 10.50 16 6 C 0.05 1.88 11.18 85.08 0.95 2.83 16 7 N -0.33 -13.08 8.67 -183.93 -1.59 -14.68 16 8 C -0.03 -1.17 6.74 41.77 0.28 -0.89 16 9 C 0.58 23.99 7.77 86.80 0.67 24.66 16 10 O -0.58 -25.51 16.00 -3.86 -0.06 -25.57 16 11 N -0.67 -24.79 3.79 -445.34 -1.69 -26.48 16 12 C 0.14 4.43 2.57 44.99 0.12 4.55 16 13 H 0.06 2.21 7.58 -2.39 -0.02 2.19 16 14 C -0.15 -3.70 9.48 71.98 0.68 -3.02 16 15 C -0.12 -3.31 4.43 30.59 0.14 -3.17 16 16 C 0.16 5.85 2.89 44.99 0.13 5.98 16 17 H 0.03 1.13 8.08 -2.38 -0.02 1.11 16 18 C -0.15 -5.00 9.49 71.98 0.68 -4.31 16 19 N -0.72 -32.52 3.84 -322.96 -1.24 -33.76 16 20 C -0.23 -12.43 9.93 84.03 0.83 -11.60 16 21 H 0.05 2.72 7.83 -2.91 -0.02 2.69 16 22 C -0.04 -2.19 5.50 84.86 0.47 -1.72 16 23 N -0.91 -48.12 12.03 21.65 0.26 -47.86 16 24 Si 0.92 46.40 29.55 68.60 2.03 48.43 16 25 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 26 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 27 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 28 C 0.14 5.04 10.76 84.93 0.91 5.95 16 29 N -0.51 -17.60 8.80 -307.09 -2.70 -20.30 16 30 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 2.09 6.99 -2.38 -0.02 2.07 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.19 6.11 8.06 -2.91 -0.02 6.08 16 38 H 0.41 15.92 5.85 -92.71 -0.54 15.37 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 45 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.38 17.61 5.70 -92.71 -0.53 17.08 16 48 H 0.24 13.01 8.31 -92.71 -0.77 12.24 16 49 H 0.19 6.18 7.64 -2.91 -0.02 6.15 16 Total: -1.00 -63.28 404.22 2.00 -61.28 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -0.12 Total: 42.04 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 7.97 Total: 26.67 kcal Atomic # 7 Polarization: -136.12 SS G_CDS: -6.97 Total: -143.09 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.92 Total: -35.33 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -63.28 2.00 -61.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134376649.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.274 kcal (2) G-P(sol) polarization free energy of solvation -63.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds