Wall clock time and date at job start Tue Mar 31 2020 20:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47227 * 2 1 4 4 O 1.42893 * 109.46926 * 120.00239 * 2 1 3 5 5 C 1.35481 * 117.00256 * 90.00150 * 4 2 1 6 6 C 1.39636 * 119.98030 * 179.97438 * 5 4 2 7 7 N 1.31530 * 120.04056 * 180.02562 * 6 5 4 8 8 C 1.33211 * 119.98664 * 359.97438 * 7 6 5 9 9 C 1.47908 * 120.01734 * 180.02562 * 8 7 6 10 10 O 1.21555 * 119.99492 * 180.02562 * 9 8 7 11 11 N 1.34771 * 120.00378 * 359.97438 * 9 8 7 12 12 C 1.46508 * 119.99837 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47317 * 35.00152 * 12 11 9 14 14 C 1.52999 * 109.46657 * 274.99636 * 12 11 9 15 15 C 1.53002 * 109.46662 * 155.00121 * 12 11 9 16 16 C 1.53003 * 109.47269 * 294.99336 * 15 12 11 17 17 H 1.09000 * 109.46953 * 305.00936 * 16 15 12 18 18 C 1.52996 * 109.47332 * 185.00423 * 16 15 12 19 19 N 1.46505 * 109.46807 * 65.00478 * 16 15 12 20 20 C 1.36931 * 119.99788 * 205.00000 * 19 16 15 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 16 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20 28 28 C 1.39386 * 119.95685 * 0.27567 * 8 7 6 29 29 N 1.32085 * 119.95739 * 359.45578 * 28 8 7 30 30 H 1.09003 * 109.46902 * 59.99851 * 1 2 3 31 31 H 1.09001 * 109.47554 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47291 * 300.00107 * 1 2 3 33 33 H 1.09002 * 109.46857 * 240.00120 * 2 1 3 34 34 H 1.09004 * 109.47379 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47400 * 300.00451 * 3 2 1 36 36 H 1.09002 * 109.47104 * 60.00272 * 3 2 1 37 37 H 1.08004 * 119.97594 * 0.02562 * 6 5 4 38 38 H 0.96999 * 120.00044 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.47359 * 299.99941 * 14 12 11 40 40 H 1.09002 * 109.46944 * 60.00616 * 14 12 11 41 41 H 1.09010 * 109.46692 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.46766 * 174.99852 * 15 12 11 43 43 H 1.08992 * 109.47398 * 54.99945 * 15 12 11 44 44 H 1.08998 * 109.47019 * 59.99816 * 18 16 15 45 45 H 1.08998 * 109.47099 * 180.02562 * 18 16 15 46 46 H 1.09002 * 109.46807 * 300.00318 * 18 16 15 47 47 H 0.97000 * 119.99792 * 24.99795 * 19 16 15 48 48 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.02124 * 179.69975 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2113 -2.0090 1.0653 6 6 2.6766 -2.7292 2.1675 7 7 2.8766 -4.0255 2.0702 8 6 2.6346 -4.6521 0.9198 9 6 2.8587 -6.1099 0.8099 10 8 2.6382 -6.6812 -0.2402 11 7 3.3083 -6.8048 1.8736 12 6 3.5308 -8.2488 1.7644 13 1 3.8911 -8.4862 0.7635 14 6 2.2163 -8.9881 2.0221 15 6 4.5718 -8.6839 2.7978 16 6 5.9197 -8.0405 2.4659 17 1 6.1964 -8.2853 1.4404 18 6 6.9881 -8.5722 3.4233 19 7 5.8153 -6.5863 2.6097 20 6 6.6615 -5.7668 1.9116 21 1 7.4056 -6.1924 1.2546 22 6 6.5587 -4.3887 2.0434 23 7 5.6516 -3.8700 2.8436 24 14 7.7080 -3.2705 1.0852 25 1 7.0973 -2.9411 -0.2277 26 1 7.9359 -2.0199 1.8528 27 1 9.0045 -3.9616 0.8687 28 6 2.1751 -3.9320 -0.1816 29 7 1.9699 -2.6311 -0.0803 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.8724 -2.2213 3.1003 38 1 3.4846 -6.3489 2.7114 39 1 1.8560 -8.7506 3.0231 40 1 1.4747 -8.6780 1.2859 41 1 2.3817 -10.0625 1.9404 42 1 4.6723 -9.7690 2.7774 43 1 4.2526 -8.3671 3.7906 44 1 7.0658 -9.6542 3.3164 45 1 7.9483 -8.1136 3.1871 46 1 6.7113 -8.3275 4.4488 47 1 5.1467 -6.2040 3.1994 48 1 5.5800 -2.9071 2.9360 49 1 1.9833 -4.4381 -1.1162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134376650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:30 Heat of formation + Delta-G solvation = -14.247663 kcal Electronic energy + Delta-G solvation = -30754.938872 eV Core-core repulsion = 26718.274497 eV Total energy + Delta-G solvation = -4036.664376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.98112 -39.30833 -38.29984 -36.69595 -34.17274 -33.81846 -33.28326 -32.13089 -30.90073 -29.78165 -28.44072 -27.38758 -26.30525 -24.89146 -24.25463 -23.58238 -21.70484 -21.17679 -20.18005 -19.73128 -18.39737 -17.67610 -17.13606 -17.01881 -15.80206 -15.72975 -14.94525 -14.69926 -14.64868 -14.49975 -14.33112 -13.80574 -13.76259 -13.47452 -13.40559 -12.86566 -12.77539 -12.65634 -12.45336 -12.43487 -12.13268 -12.03549 -11.86436 -11.70681 -11.62406 -11.37130 -11.11756 -10.96146 -10.82942 -10.69657 -10.66935 -10.55662 -10.34684 -10.21436 -9.86692 -9.68768 -9.58124 -8.90071 -8.71052 -8.46488 -8.20580 -6.85492 -5.68707 -2.95158 0.96734 1.55172 2.98215 3.32147 3.42511 3.48526 3.50556 3.74915 4.30019 4.34543 4.61597 4.66421 4.74647 4.87083 4.88996 5.12864 5.15227 5.36250 5.40946 5.46440 5.52567 5.56046 5.60623 5.62421 5.71428 5.72554 5.72831 5.92167 5.93194 5.99101 6.01126 6.05146 6.06511 6.18074 6.28462 6.38079 6.42183 6.47484 6.59158 6.65588 6.89916 7.09393 7.19002 7.26800 7.53974 7.76549 8.03892 8.32139 8.46017 8.86663 9.58274 10.13499 10.49291 11.49469 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.004385 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.665134 B = 6383.537692 C = 8086.586662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.077 3.923 3 C -0.150 4.150 4 O -0.293 6.293 5 C 0.280 3.720 6 C 0.062 3.938 7 N -0.314 5.314 8 C -0.006 4.006 9 C 0.592 3.408 10 O -0.561 6.561 11 N -0.675 5.675 12 C 0.148 3.852 13 H 0.084 0.916 14 C -0.162 4.162 15 C -0.134 4.134 16 C 0.169 3.831 17 H 0.046 0.954 18 C -0.163 4.163 19 N -0.715 5.715 20 C -0.232 4.232 21 H 0.063 0.937 22 C -0.005 4.005 23 N -0.905 5.905 24 Si 0.888 3.112 25 H -0.296 1.296 26 H -0.293 1.293 27 H -0.284 1.284 28 C 0.138 3.862 29 N -0.511 5.511 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.175 0.825 38 H 0.415 0.585 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.381 0.619 48 H 0.249 0.751 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.539 1.226 -1.066 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.199 6.199 5 C 0.097 3.903 6 C -0.105 4.105 7 N -0.031 5.031 8 C -0.146 4.146 9 C 0.376 3.624 10 O -0.440 6.440 11 N -0.326 5.326 12 C 0.043 3.957 13 H 0.102 0.898 14 C -0.221 4.221 15 C -0.172 4.172 16 C 0.059 3.941 17 H 0.064 0.936 18 C -0.223 4.223 19 N -0.358 5.358 20 C -0.364 4.364 21 H 0.081 0.919 22 C -0.202 4.202 23 N -0.553 5.553 24 Si 0.720 3.280 25 H -0.224 1.224 26 H -0.220 1.220 27 H -0.210 1.210 28 C -0.021 4.021 29 N -0.240 5.240 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.192 0.808 38 H 0.255 0.745 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.216 0.784 48 H 0.059 0.941 49 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.526 1.055 -1.674 10.711 hybrid contribution 0.835 1.237 -0.244 1.513 sum -9.691 2.292 -1.919 10.142 Atomic orbital electron populations 1.22206 0.94896 1.02870 1.02448 1.22376 0.94339 0.92933 0.88267 1.21899 1.02228 0.93808 1.02798 1.86286 1.79645 1.15524 1.38402 1.21336 0.92028 0.85385 0.91582 1.22863 0.99578 0.89846 0.98183 1.68507 1.02869 1.08095 1.23600 1.21894 1.04072 0.96383 0.92219 1.17334 0.76804 0.84448 0.83764 1.90706 1.54463 1.70085 1.28786 1.45814 1.63816 1.07983 1.15014 1.20868 0.94173 0.80065 1.00594 0.89796 1.22209 0.98163 0.99969 1.01718 1.22213 0.96081 1.00356 0.98575 1.20275 0.91231 0.85819 0.96787 0.93573 1.22421 1.01197 0.98145 1.00559 1.42453 1.41140 0.98727 1.53498 1.19081 1.10534 0.87784 1.18974 0.91854 1.24568 0.99021 0.96397 1.00216 1.69674 1.35162 1.10330 1.40120 0.86489 0.80994 0.81053 0.79482 1.22399 1.21964 1.21021 1.23319 0.91572 0.87920 0.99302 1.68030 1.20808 1.10943 1.24178 0.91207 0.91994 0.91974 0.89305 0.91693 0.90625 0.91590 0.80833 0.74519 0.92731 0.92385 0.92057 0.90788 0.91665 0.94686 0.92934 0.93621 0.78376 0.94072 0.80766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.53 37.16 0.35 -1.40 16 2 C 0.08 0.96 3.11 -26.73 -0.08 0.88 16 3 C -0.15 -1.50 9.56 37.16 0.36 -1.15 16 4 O -0.29 -4.49 9.76 -18.13 -0.18 -4.66 16 5 C 0.28 4.81 7.47 -16.71 -0.12 4.69 16 6 C 0.06 1.12 11.18 -17.16 -0.19 0.93 16 7 N -0.31 -6.17 8.65 -9.48 -0.08 -6.25 16 8 C -0.01 -0.13 6.74 -82.88 -0.56 -0.69 16 9 C 0.59 11.96 7.77 -12.30 -0.10 11.87 16 10 O -0.56 -12.06 16.00 5.32 0.09 -11.97 16 11 N -0.67 -12.48 3.79 -54.73 -0.21 -12.69 16 12 C 0.15 2.38 2.58 -67.93 -0.17 2.21 16 13 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 14 C -0.16 -2.17 9.48 37.16 0.35 -1.81 16 15 C -0.13 -2.01 4.43 -26.73 -0.12 -2.13 16 16 C 0.17 3.15 2.89 -67.93 -0.20 2.96 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 19 N -0.71 -16.19 3.84 -53.42 -0.21 -16.40 16 20 C -0.23 -6.08 9.93 -15.06 -0.15 -6.23 16 21 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 22 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 23 N -0.91 -23.86 12.01 55.49 0.67 -23.19 16 24 Si 0.89 22.26 29.55 -169.99 -5.02 17.23 16 25 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 28 C 0.14 2.49 10.76 -17.02 -0.18 2.31 16 29 N -0.51 -8.84 8.80 -12.76 -0.11 -8.95 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.21 6.99 -51.93 -0.36 0.85 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.17 2.84 8.06 -52.48 -0.42 2.42 16 38 H 0.42 8.03 5.85 -40.82 -0.24 7.79 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.38 8.91 5.70 -40.82 -0.23 8.68 16 48 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 49 H 0.18 2.87 7.64 -52.49 -0.40 2.47 16 LS Contribution 404.18 15.07 6.09 6.09 Total: -1.00 -28.91 404.18 -7.46 -36.37 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -7.94 Total: 14.68 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -0.56 Total: 9.74 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: 0.06 Total: -67.48 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.09 Total: -16.64 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.91 -7.46 -36.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134376650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.126 kcal (2) G-P(sol) polarization free energy of solvation -28.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds