Wall clock time and date at job start Tue Mar 31 2020 20:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47227 * 2 1 4 4 O 1.42893 * 109.46926 * 120.00239 * 2 1 3 5 5 C 1.35481 * 117.00256 * 90.00150 * 4 2 1 6 6 C 1.39636 * 119.98030 * 179.97438 * 5 4 2 7 7 N 1.31530 * 120.04056 * 180.02562 * 6 5 4 8 8 C 1.33211 * 119.98664 * 359.97438 * 7 6 5 9 9 C 1.47908 * 120.01734 * 180.02562 * 8 7 6 10 10 O 1.21555 * 119.99492 * 180.02562 * 9 8 7 11 11 N 1.34771 * 120.00378 * 359.97438 * 9 8 7 12 12 C 1.46508 * 119.99837 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47317 * 35.00152 * 12 11 9 14 14 C 1.52999 * 109.46657 * 274.99636 * 12 11 9 15 15 C 1.53002 * 109.46662 * 155.00121 * 12 11 9 16 16 C 1.53003 * 109.47269 * 294.99336 * 15 12 11 17 17 H 1.09000 * 109.46953 * 305.00936 * 16 15 12 18 18 C 1.52996 * 109.47332 * 185.00423 * 16 15 12 19 19 N 1.46505 * 109.46807 * 65.00478 * 16 15 12 20 20 C 1.36931 * 119.99788 * 205.00000 * 19 16 15 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 16 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20 28 28 C 1.39386 * 119.95685 * 0.27567 * 8 7 6 29 29 N 1.32085 * 119.95739 * 359.45578 * 28 8 7 30 30 H 1.09003 * 109.46902 * 59.99851 * 1 2 3 31 31 H 1.09001 * 109.47554 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47291 * 300.00107 * 1 2 3 33 33 H 1.09002 * 109.46857 * 240.00120 * 2 1 3 34 34 H 1.09004 * 109.47379 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47400 * 300.00451 * 3 2 1 36 36 H 1.09002 * 109.47104 * 60.00272 * 3 2 1 37 37 H 1.08004 * 119.97594 * 0.02562 * 6 5 4 38 38 H 0.96999 * 120.00044 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.47359 * 299.99941 * 14 12 11 40 40 H 1.09002 * 109.46944 * 60.00616 * 14 12 11 41 41 H 1.09010 * 109.46692 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.46766 * 174.99852 * 15 12 11 43 43 H 1.08992 * 109.47398 * 54.99945 * 15 12 11 44 44 H 1.08998 * 109.47019 * 59.99816 * 18 16 15 45 45 H 1.08998 * 109.47099 * 180.02562 * 18 16 15 46 46 H 1.09002 * 109.46807 * 300.00318 * 18 16 15 47 47 H 0.97000 * 119.99792 * 24.99795 * 19 16 15 48 48 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.02124 * 179.69975 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2113 -2.0090 1.0653 6 6 2.6766 -2.7292 2.1675 7 7 2.8766 -4.0255 2.0702 8 6 2.6346 -4.6521 0.9198 9 6 2.8587 -6.1099 0.8099 10 8 2.6382 -6.6812 -0.2402 11 7 3.3083 -6.8048 1.8736 12 6 3.5308 -8.2488 1.7644 13 1 3.8911 -8.4862 0.7635 14 6 2.2163 -8.9881 2.0221 15 6 4.5718 -8.6839 2.7978 16 6 5.9197 -8.0405 2.4659 17 1 6.1964 -8.2853 1.4404 18 6 6.9881 -8.5722 3.4233 19 7 5.8153 -6.5863 2.6097 20 6 6.6615 -5.7668 1.9116 21 1 7.4056 -6.1924 1.2546 22 6 6.5587 -4.3887 2.0434 23 7 5.6516 -3.8700 2.8436 24 14 7.7080 -3.2705 1.0852 25 1 7.0973 -2.9411 -0.2277 26 1 7.9359 -2.0199 1.8528 27 1 9.0045 -3.9616 0.8687 28 6 2.1751 -3.9320 -0.1816 29 7 1.9699 -2.6311 -0.0803 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.8724 -2.2213 3.1003 38 1 3.4846 -6.3489 2.7114 39 1 1.8560 -8.7506 3.0231 40 1 1.4747 -8.6780 1.2859 41 1 2.3817 -10.0625 1.9404 42 1 4.6723 -9.7690 2.7774 43 1 4.2526 -8.3671 3.7906 44 1 7.0658 -9.6542 3.3164 45 1 7.9483 -8.1136 3.1871 46 1 6.7113 -8.3275 4.4488 47 1 5.1467 -6.2040 3.1994 48 1 5.5800 -2.9071 2.9360 49 1 1.9833 -4.4381 -1.1162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134376650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:29 Heat of formation + Delta-G solvation = -32.972188 kcal Electronic energy + Delta-G solvation = -30755.750828 eV Core-core repulsion = 26718.274497 eV Total energy + Delta-G solvation = -4037.476332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36707 -40.71802 -39.59080 -38.22107 -35.77108 -35.22699 -34.34297 -33.88346 -32.35425 -31.20016 -30.10446 -28.21240 -27.56476 -26.25927 -25.65541 -25.48988 -22.99019 -22.35338 -21.63085 -21.21453 -19.63533 -19.10418 -19.00750 -18.47328 -17.17302 -17.05806 -16.60265 -16.15056 -15.98360 -15.91951 -15.56170 -15.45336 -15.31906 -14.91555 -14.63797 -14.23234 -14.16648 -14.02335 -13.55378 -13.40853 -13.29480 -13.26404 -13.17460 -12.95938 -12.93144 -12.77854 -12.70206 -12.58404 -12.30739 -12.21501 -12.13815 -11.82095 -11.72413 -11.68934 -11.54289 -11.37292 -11.19045 -10.83109 -10.14104 -9.93348 -9.61036 -8.72646 -7.72859 -4.95890 -0.46618 0.12871 1.38010 1.43377 1.45878 1.76196 1.82064 2.34018 2.60079 2.88720 2.97881 3.22550 3.48680 3.55428 3.83432 3.86374 3.96982 3.98568 4.11104 4.20256 4.21777 4.23642 4.42627 4.55678 4.60875 4.64610 4.68686 4.73999 4.80636 4.83124 4.87681 4.91231 4.96065 5.09558 5.12191 5.17304 5.19080 5.21130 5.22558 5.40610 5.45894 5.65483 5.67031 5.77724 5.99616 6.13939 6.43890 6.58086 6.84271 7.34520 7.53836 8.27528 8.54682 9.43291 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.004385 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.665134 B = 6383.537692 C = 8086.586662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.066 3.934 3 C -0.145 4.145 4 O -0.296 6.296 5 C 0.287 3.713 6 C 0.052 3.948 7 N -0.328 5.328 8 C -0.030 4.030 9 C 0.584 3.416 10 O -0.583 6.583 11 N -0.671 5.671 12 C 0.143 3.857 13 H 0.062 0.938 14 C -0.151 4.151 15 C -0.120 4.120 16 C 0.161 3.839 17 H 0.028 0.972 18 C -0.153 4.153 19 N -0.718 5.718 20 C -0.234 4.234 21 H 0.050 0.950 22 C -0.041 4.041 23 N -0.906 5.906 24 Si 0.924 3.076 25 H -0.311 1.311 26 H -0.296 1.296 27 H -0.283 1.283 28 C 0.138 3.862 29 N -0.509 5.509 30 H 0.094 0.906 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.187 0.813 38 H 0.411 0.589 39 H 0.066 0.934 40 H 0.041 0.959 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.027 0.973 46 H 0.047 0.953 47 H 0.377 0.623 48 H 0.244 0.756 49 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.403 0.904 -0.479 11.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 C -0.202 4.202 4 O -0.201 6.201 5 C 0.103 3.897 6 C -0.116 4.116 7 N -0.044 5.044 8 C -0.168 4.168 9 C 0.369 3.631 10 O -0.465 6.465 11 N -0.321 5.321 12 C 0.039 3.961 13 H 0.080 0.920 14 C -0.210 4.210 15 C -0.158 4.158 16 C 0.053 3.947 17 H 0.046 0.954 18 C -0.213 4.213 19 N -0.361 5.361 20 C -0.367 4.367 21 H 0.068 0.932 22 C -0.237 4.237 23 N -0.554 5.554 24 Si 0.757 3.243 25 H -0.240 1.240 26 H -0.222 1.222 27 H -0.209 1.209 28 C -0.021 4.021 29 N -0.238 5.238 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.204 0.796 38 H 0.250 0.750 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.129 0.871 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.046 0.954 46 H 0.066 0.934 47 H 0.212 0.788 48 H 0.053 0.947 49 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.381 0.699 -1.075 11.453 hybrid contribution 1.096 1.386 -0.465 1.827 sum -10.285 2.085 -1.540 10.607 Atomic orbital electron populations 1.22168 0.93148 1.02293 1.04126 1.22744 0.95827 0.93805 0.86632 1.21923 1.01513 0.92195 1.04582 1.86298 1.79378 1.14417 1.39973 1.21403 0.90897 0.86181 0.91180 1.23108 0.99771 0.89642 0.99066 1.68435 1.03211 1.08924 1.23861 1.21951 1.05519 0.96434 0.92898 1.17529 0.76863 0.84859 0.83866 1.90675 1.55746 1.70581 1.29474 1.45904 1.62879 1.09007 1.14262 1.21061 0.96152 0.79039 0.99891 0.92006 1.22110 0.95847 1.01165 1.01831 1.22135 0.93168 1.02157 0.98357 1.20491 0.93987 0.83905 0.96341 0.95358 1.22268 0.99051 1.00061 0.99904 1.42486 1.40422 1.00259 1.52971 1.19125 1.10533 0.88342 1.18692 0.93235 1.24918 1.00219 0.97167 1.01383 1.69732 1.35415 1.09791 1.40480 0.85920 0.80177 0.80140 0.78039 1.24036 1.22225 1.20931 1.23505 0.90994 0.88211 0.99380 1.68109 1.20948 1.10525 1.24234 0.88754 0.93664 0.91068 0.90682 0.92827 0.87956 0.90675 0.79625 0.74981 0.91520 0.93964 0.89247 0.87076 0.90720 0.91257 0.95418 0.93419 0.78822 0.94664 0.79684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.53 71.98 0.69 -2.39 16 2 C 0.07 1.56 3.11 30.59 0.10 1.66 16 3 C -0.15 -2.62 9.56 71.98 0.69 -1.93 16 4 O -0.30 -8.86 9.76 -87.80 -0.86 -9.72 16 5 C 0.29 9.87 7.47 84.92 0.63 10.50 16 6 C 0.05 1.88 11.18 85.08 0.95 2.84 16 7 N -0.33 -13.08 8.65 -183.92 -1.59 -14.67 16 8 C -0.03 -1.19 6.74 41.77 0.28 -0.91 16 9 C 0.58 24.07 7.77 86.81 0.67 24.74 16 10 O -0.58 -25.63 16.00 -3.89 -0.06 -25.70 16 11 N -0.67 -24.83 3.79 -445.33 -1.69 -26.52 16 12 C 0.14 4.44 2.58 44.99 0.12 4.55 16 13 H 0.06 2.21 7.58 -2.39 -0.02 2.19 16 14 C -0.15 -3.71 9.48 71.98 0.68 -3.03 16 15 C -0.12 -3.31 4.43 30.60 0.14 -3.17 16 16 C 0.16 5.85 2.89 44.99 0.13 5.98 16 17 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 18 C -0.15 -4.99 9.49 71.98 0.68 -4.30 16 19 N -0.72 -32.50 3.84 -322.93 -1.24 -33.75 16 20 C -0.23 -12.41 9.93 84.04 0.83 -11.57 16 21 H 0.05 2.72 7.83 -2.91 -0.02 2.70 16 22 C -0.04 -2.20 5.50 84.86 0.47 -1.74 16 23 N -0.91 -48.04 12.01 21.65 0.26 -47.78 16 24 Si 0.92 46.26 29.55 68.60 2.03 48.29 16 25 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 26 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 27 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 28 C 0.14 5.06 10.76 84.93 0.91 5.98 16 29 N -0.51 -17.69 8.80 -307.08 -2.70 -20.39 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 2.00 6.99 -2.39 -0.02 1.98 16 34 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.19 6.09 8.06 -2.91 -0.02 6.07 16 38 H 0.41 15.93 5.85 -92.71 -0.54 15.39 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.38 17.60 5.70 -92.71 -0.53 17.07 16 48 H 0.24 12.98 8.31 -92.70 -0.77 12.21 16 49 H 0.19 6.22 7.64 -2.91 -0.02 6.20 16 Total: -1.00 -63.13 404.18 2.00 -61.12 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -0.12 Total: 41.91 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 7.97 Total: 27.20 kcal Atomic # 7 Polarization: -136.15 SS G_CDS: -6.96 Total: -143.11 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.92 Total: -35.42 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -63.13 2.00 -61.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134376650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.150 kcal (2) G-P(sol) polarization free energy of solvation -63.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds