Wall clock time and date at job start Tue Mar 31 2020 20:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 O 1.42891 * 109.47211 * 120.00550 * 2 1 3 5 5 C 1.35476 * 117.00403 * 149.99916 * 4 2 1 6 6 C 1.39632 * 119.97907 * 179.97438 * 5 4 2 7 7 N 1.31537 * 120.04055 * 179.97438 * 6 5 4 8 8 C 1.33214 * 119.98732 * 0.02562 * 7 6 5 9 9 C 1.47906 * 120.02166 * 180.02562 * 8 7 6 10 10 O 1.21544 * 119.99875 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99713 * 0.02562 * 9 8 7 12 12 C 1.46512 * 119.99530 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46965 * 324.99803 * 12 11 9 14 14 C 1.53001 * 109.46953 * 85.00221 * 12 11 9 15 15 C 1.52996 * 109.46950 * 204.99917 * 12 11 9 16 16 C 1.53000 * 109.47356 * 64.99842 * 15 12 11 17 17 H 1.09003 * 109.46987 * 305.00161 * 16 15 12 18 18 C 1.52996 * 109.47191 * 184.99774 * 16 15 12 19 19 N 1.46501 * 109.46815 * 64.99843 * 16 15 12 20 20 C 1.36940 * 120.00318 * 204.99800 * 19 16 15 21 21 H 1.08003 * 119.99561 * 0.02562 * 20 19 16 22 22 C 1.38808 * 120.00437 * 179.97438 * 20 19 16 23 23 N 1.31616 * 119.99773 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00193 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46964 * 59.99977 * 24 22 20 26 26 H 1.48494 * 109.47045 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47061 * 300.00267 * 24 22 20 28 28 C 1.39388 * 119.95280 * 359.97438 * 8 7 6 29 29 N 1.32078 * 119.96235 * 0.02562 * 28 8 7 30 30 H 1.08999 * 109.47259 * 300.00193 * 1 2 3 31 31 H 1.09008 * 109.47289 * 59.99397 * 1 2 3 32 32 H 1.08995 * 109.47327 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47018 * 240.00439 * 2 1 3 34 34 H 1.09001 * 109.46688 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47508 * 300.00168 * 3 2 1 36 36 H 1.08997 * 109.47061 * 60.00299 * 3 2 1 37 37 H 1.08002 * 119.97878 * 0.02562 * 6 5 4 38 38 H 0.96991 * 120.00611 * 0.02562 * 11 9 8 39 39 H 1.09000 * 109.47062 * 180.02562 * 14 12 11 40 40 H 1.09004 * 109.46644 * 299.99488 * 14 12 11 41 41 H 1.08997 * 109.47514 * 59.99445 * 14 12 11 42 42 H 1.09000 * 109.47147 * 184.99825 * 15 12 11 43 43 H 1.09001 * 109.47315 * 305.00246 * 15 12 11 44 44 H 1.08993 * 109.47259 * 300.00034 * 18 16 15 45 45 H 1.09001 * 109.47230 * 60.00925 * 18 16 15 46 46 H 1.09007 * 109.46856 * 180.02562 * 18 16 15 47 47 H 0.96999 * 119.99909 * 25.00427 * 19 16 15 48 48 H 0.97000 * 120.00459 * 179.97438 * 23 22 20 49 49 H 1.08003 * 120.01760 * 179.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1666 5 6 3.1969 -1.3121 1.0653 6 6 3.7212 -1.9900 2.1677 7 7 4.8768 -2.6107 2.0705 8 6 5.5478 -2.5922 0.9198 9 6 6.8471 -3.2904 0.8095 10 8 7.4587 -3.2736 -0.2407 11 7 7.3522 -3.9460 1.8732 12 6 8.6389 -4.6380 1.7637 13 1 8.7420 -5.0572 0.7629 14 6 9.7750 -3.6459 2.0208 15 6 8.7018 -5.7643 2.7973 16 6 7.6449 -6.8199 2.4662 17 1 6.6659 -6.3454 2.3994 18 6 7.6229 -7.8823 3.5670 19 7 7.9701 -7.4512 1.1848 20 6 6.9791 -8.0225 0.4319 21 1 5.9577 -8.0072 0.7826 22 6 7.2870 -8.6201 -0.7825 23 7 8.5316 -8.6382 -1.2101 24 14 5.9350 -9.3987 -1.8098 25 1 4.9259 -8.3680 -2.1629 26 1 6.5206 -9.9647 -3.0515 27 1 5.2839 -10.4827 -1.0313 28 6 5.0241 -1.9154 -0.1804 29 7 3.8635 -1.2928 -0.0807 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.1771 -2.0055 3.1005 38 1 6.8636 -3.9603 2.7109 39 1 10.7323 -4.1607 1.9389 40 1 9.7302 -2.8435 1.2843 41 1 9.6719 -3.2267 3.0216 42 1 9.6910 -6.2216 2.7767 43 1 8.5101 -5.3574 3.7902 44 1 8.6018 -8.3567 3.6338 45 1 7.3808 -7.4126 4.5204 46 1 6.8702 -8.6346 3.3309 47 1 8.8873 -7.4646 0.8697 48 1 8.7470 -9.0562 -2.0585 49 1 5.5674 -1.8994 -1.1137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134376651.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:36 Heat of formation + Delta-G solvation = -25.233578 kcal Electronic energy + Delta-G solvation = -29351.823182 eV Core-core repulsion = 25314.682421 eV Total energy + Delta-G solvation = -4037.140761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.62714 -39.69151 -38.73814 -36.77345 -34.67563 -34.27158 -33.71348 -32.11707 -31.24394 -30.10105 -28.53998 -27.68913 -26.28660 -25.49420 -24.85514 -23.56123 -22.10213 -21.51027 -20.39088 -19.65030 -18.91148 -18.33093 -17.67469 -17.07690 -16.33783 -15.87058 -15.30326 -15.19047 -15.03760 -14.70559 -14.63796 -14.06482 -13.87760 -13.83247 -13.60360 -13.24152 -12.99471 -12.81755 -12.75148 -12.65927 -12.42267 -12.11530 -12.06599 -11.93560 -11.68858 -11.62579 -11.55147 -11.19284 -11.08914 -11.00530 -10.78017 -10.57970 -10.38290 -10.20187 -10.09946 -9.85336 -9.56250 -9.37871 -9.00602 -8.82484 -8.65132 -6.86725 -5.68029 -2.95614 0.34251 0.79023 2.45560 2.82353 3.27633 3.48865 3.53325 3.54018 3.72223 3.73319 3.92866 4.21678 4.44961 4.53912 4.66620 4.81435 4.83143 4.96283 5.14000 5.16839 5.26778 5.32397 5.34224 5.40658 5.45149 5.55164 5.66235 5.67076 5.74036 5.76218 5.86047 5.94078 5.98708 6.07517 6.19322 6.34723 6.39279 6.48618 6.62250 6.70998 6.73735 6.82632 6.87995 6.97493 7.13534 7.35504 7.76974 7.82620 8.45841 8.50735 9.61772 10.19471 10.53977 11.54720 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010724 B = 0.003050 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.450658 B = 9178.311961 C =10491.144531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.076 3.924 3 C -0.169 4.169 4 O -0.290 6.290 5 C 0.293 3.707 6 C 0.043 3.957 7 N -0.376 5.376 8 C -0.010 4.010 9 C 0.579 3.421 10 O -0.525 6.525 11 N -0.694 5.694 12 C 0.142 3.858 13 H 0.108 0.892 14 C -0.161 4.161 15 C -0.131 4.131 16 C 0.171 3.829 17 H 0.046 0.954 18 C -0.165 4.165 19 N -0.720 5.720 20 C -0.233 4.233 21 H 0.066 0.934 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.902 3.098 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.288 1.288 28 C 0.157 3.843 29 N -0.502 5.502 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.182 0.818 38 H 0.404 0.596 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.034 0.966 46 H 0.051 0.949 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.397 19.939 8.477 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.020 3.980 3 C -0.226 4.226 4 O -0.195 6.195 5 C 0.110 3.890 6 C -0.124 4.124 7 N -0.093 5.093 8 C -0.149 4.149 9 C 0.362 3.638 10 O -0.400 6.400 11 N -0.344 5.344 12 C 0.038 3.962 13 H 0.126 0.874 14 C -0.219 4.219 15 C -0.169 4.169 16 C 0.061 3.939 17 H 0.064 0.936 18 C -0.225 4.225 19 N -0.362 5.362 20 C -0.364 4.364 21 H 0.083 0.917 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.734 3.266 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.214 1.214 28 C -0.002 4.002 29 N -0.231 5.231 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.199 0.801 38 H 0.239 0.761 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.251 19.903 7.818 23.714 hybrid contribution -0.786 -0.498 -0.501 1.056 sum -11.037 19.405 7.318 23.493 Atomic orbital electron populations 1.21914 0.92387 1.03302 1.03178 1.22502 0.94855 0.92893 0.87722 1.22224 1.02183 0.95347 1.02874 1.86291 1.30625 1.63546 1.39073 1.21273 0.86735 0.89784 0.91223 1.22936 0.93490 0.97239 0.98739 1.68365 1.04867 1.11942 1.24122 1.22118 0.98382 1.02785 0.91604 1.17354 0.83064 0.79054 0.84295 1.90833 1.59996 1.61107 1.28076 1.45790 1.22683 1.51982 1.13961 1.21121 0.81007 0.91199 1.02851 0.87434 1.22185 0.98663 0.99901 1.01168 1.22168 1.01506 0.95961 0.97301 1.20233 0.95744 0.90913 0.87053 0.93554 1.22448 1.01429 1.00721 0.97905 1.42387 1.08276 1.67377 1.18140 1.19109 0.89340 1.28514 0.99476 0.91651 1.24677 0.96135 1.01886 0.98087 1.69631 1.16512 1.49887 1.22002 0.86341 0.81279 0.79104 0.79917 1.21472 1.21713 1.21446 1.23563 0.89062 0.87929 0.99607 1.68188 1.09010 1.21758 1.24105 0.91467 0.90252 0.91590 0.88963 0.91958 0.90782 0.91799 0.80119 0.76094 0.91569 0.92496 0.93054 0.90489 0.91930 0.93546 0.94671 0.92956 0.78339 0.93576 0.79589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.56 37.16 0.36 -0.57 16 2 C 0.08 0.64 3.11 -26.73 -0.08 0.55 16 3 C -0.17 -1.21 9.53 37.16 0.35 -0.86 16 4 O -0.29 -2.93 9.76 -18.12 -0.18 -3.10 16 5 C 0.29 3.36 7.47 -16.71 -0.12 3.24 16 6 C 0.04 0.47 11.18 -17.16 -0.19 0.28 16 7 N -0.38 -4.88 9.70 -9.48 -0.09 -4.97 16 8 C -0.01 -0.14 6.74 -82.88 -0.56 -0.70 16 9 C 0.58 9.95 7.77 -12.30 -0.10 9.85 16 10 O -0.52 -10.70 15.99 5.33 0.09 -10.61 16 11 N -0.69 -10.83 4.44 -54.73 -0.24 -11.07 16 12 C 0.14 2.33 2.52 -67.93 -0.17 2.16 16 13 H 0.11 2.28 7.05 -51.93 -0.37 1.91 16 14 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 15 C -0.13 -2.03 4.29 -26.73 -0.11 -2.14 16 16 C 0.17 3.30 2.84 -67.93 -0.19 3.11 16 17 H 0.05 0.94 7.56 -51.93 -0.39 0.54 16 18 C -0.16 -2.94 9.49 37.16 0.35 -2.59 16 19 N -0.72 -17.82 4.49 -53.42 -0.24 -18.06 16 20 C -0.23 -6.54 9.93 -15.06 -0.15 -6.69 16 21 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.61 13.06 55.49 0.72 -27.88 16 24 Si 0.90 23.14 29.55 -169.99 -5.02 18.12 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 28 C 0.16 2.13 10.76 -17.02 -0.18 1.95 16 29 N -0.50 -6.28 8.80 -12.76 -0.11 -6.39 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.87 6.99 -51.93 -0.36 0.51 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 38 H 0.40 5.54 7.94 -40.82 -0.32 5.21 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 47 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 48 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.19 2.37 7.64 -52.48 -0.40 1.97 16 LS Contribution 410.47 15.07 6.19 6.19 Total: -1.00 -33.06 410.47 -7.49 -40.56 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -8.05 Total: 11.97 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -0.55 Total: 5.27 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: 0.04 Total: -68.38 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.09 Total: -13.72 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.06 -7.49 -40.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134376651.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.323 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds