Wall clock time and date at job start Tue Mar 31 2020 20:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 O 1.42891 * 109.47211 * 120.00550 * 2 1 3 5 5 C 1.35476 * 117.00403 * 149.99916 * 4 2 1 6 6 C 1.39632 * 119.97907 * 179.97438 * 5 4 2 7 7 N 1.31537 * 120.04055 * 179.97438 * 6 5 4 8 8 C 1.33214 * 119.98732 * 0.02562 * 7 6 5 9 9 C 1.47906 * 120.02166 * 180.02562 * 8 7 6 10 10 O 1.21544 * 119.99875 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99713 * 0.02562 * 9 8 7 12 12 C 1.46512 * 119.99530 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46965 * 324.99803 * 12 11 9 14 14 C 1.53001 * 109.46953 * 85.00221 * 12 11 9 15 15 C 1.52996 * 109.46950 * 204.99917 * 12 11 9 16 16 C 1.53000 * 109.47356 * 64.99842 * 15 12 11 17 17 H 1.09003 * 109.46987 * 305.00161 * 16 15 12 18 18 C 1.52996 * 109.47191 * 184.99774 * 16 15 12 19 19 N 1.46501 * 109.46815 * 64.99843 * 16 15 12 20 20 C 1.36940 * 120.00318 * 204.99800 * 19 16 15 21 21 H 1.08003 * 119.99561 * 0.02562 * 20 19 16 22 22 C 1.38808 * 120.00437 * 179.97438 * 20 19 16 23 23 N 1.31616 * 119.99773 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00193 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46964 * 59.99977 * 24 22 20 26 26 H 1.48494 * 109.47045 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47061 * 300.00267 * 24 22 20 28 28 C 1.39388 * 119.95280 * 359.97438 * 8 7 6 29 29 N 1.32078 * 119.96235 * 0.02562 * 28 8 7 30 30 H 1.08999 * 109.47259 * 300.00193 * 1 2 3 31 31 H 1.09008 * 109.47289 * 59.99397 * 1 2 3 32 32 H 1.08995 * 109.47327 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47018 * 240.00439 * 2 1 3 34 34 H 1.09001 * 109.46688 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47508 * 300.00168 * 3 2 1 36 36 H 1.08997 * 109.47061 * 60.00299 * 3 2 1 37 37 H 1.08002 * 119.97878 * 0.02562 * 6 5 4 38 38 H 0.96991 * 120.00611 * 0.02562 * 11 9 8 39 39 H 1.09000 * 109.47062 * 180.02562 * 14 12 11 40 40 H 1.09004 * 109.46644 * 299.99488 * 14 12 11 41 41 H 1.08997 * 109.47514 * 59.99445 * 14 12 11 42 42 H 1.09000 * 109.47147 * 184.99825 * 15 12 11 43 43 H 1.09001 * 109.47315 * 305.00246 * 15 12 11 44 44 H 1.08993 * 109.47259 * 300.00034 * 18 16 15 45 45 H 1.09001 * 109.47230 * 60.00925 * 18 16 15 46 46 H 1.09007 * 109.46856 * 180.02562 * 18 16 15 47 47 H 0.96999 * 119.99909 * 25.00427 * 19 16 15 48 48 H 0.97000 * 120.00459 * 179.97438 * 23 22 20 49 49 H 1.08003 * 120.01760 * 179.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1666 5 6 3.1969 -1.3121 1.0653 6 6 3.7212 -1.9900 2.1677 7 7 4.8768 -2.6107 2.0705 8 6 5.5478 -2.5922 0.9198 9 6 6.8471 -3.2904 0.8095 10 8 7.4587 -3.2736 -0.2407 11 7 7.3522 -3.9460 1.8732 12 6 8.6389 -4.6380 1.7637 13 1 8.7420 -5.0572 0.7629 14 6 9.7750 -3.6459 2.0208 15 6 8.7018 -5.7643 2.7973 16 6 7.6449 -6.8199 2.4662 17 1 6.6659 -6.3454 2.3994 18 6 7.6229 -7.8823 3.5670 19 7 7.9701 -7.4512 1.1848 20 6 6.9791 -8.0225 0.4319 21 1 5.9577 -8.0072 0.7826 22 6 7.2870 -8.6201 -0.7825 23 7 8.5316 -8.6382 -1.2101 24 14 5.9350 -9.3987 -1.8098 25 1 4.9259 -8.3680 -2.1629 26 1 6.5206 -9.9647 -3.0515 27 1 5.2839 -10.4827 -1.0313 28 6 5.0241 -1.9154 -0.1804 29 7 3.8635 -1.2928 -0.0807 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.1771 -2.0055 3.1005 38 1 6.8636 -3.9603 2.7109 39 1 10.7323 -4.1607 1.9389 40 1 9.7302 -2.8435 1.2843 41 1 9.6719 -3.2267 3.0216 42 1 9.6910 -6.2216 2.7767 43 1 8.5101 -5.3574 3.7902 44 1 8.6018 -8.3567 3.6338 45 1 7.3808 -7.4126 4.5204 46 1 6.8702 -8.6346 3.3309 47 1 8.8873 -7.4646 0.8697 48 1 8.7470 -9.0562 -2.0585 49 1 5.5674 -1.8994 -1.1137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134376651.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:35 Heat of formation + Delta-G solvation = -49.559236 kcal Electronic energy + Delta-G solvation = -29352.878021 eV Core-core repulsion = 25314.682421 eV Total energy + Delta-G solvation = -4038.195600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.60760 -40.85775 -39.72842 -38.28629 -36.13388 -35.44469 -34.42003 -33.98474 -32.46633 -31.28157 -30.37829 -28.21887 -27.59046 -26.47549 -25.90187 -25.61365 -23.13007 -22.46363 -21.74492 -21.16552 -19.76100 -19.52658 -19.13456 -18.66740 -17.22162 -17.20166 -16.69162 -16.29899 -16.09199 -16.02467 -15.66279 -15.56424 -15.46040 -14.98253 -14.77402 -14.49346 -14.22178 -14.19864 -13.60093 -13.45672 -13.37884 -13.27485 -13.16838 -13.03542 -12.97936 -12.91591 -12.78031 -12.65686 -12.48698 -12.26281 -12.22259 -11.91967 -11.81659 -11.78763 -11.56429 -11.41494 -11.37661 -10.90326 -10.44115 -10.12995 -9.82600 -8.93621 -7.91033 -5.16177 -0.69590 -0.17428 1.41914 1.44912 1.50389 1.61842 1.64214 2.08328 2.56375 2.61181 2.79340 2.91740 3.26314 3.42804 3.75320 3.82117 3.86755 3.94006 4.00566 4.04729 4.15104 4.19889 4.41455 4.43486 4.55020 4.57361 4.68648 4.71135 4.79107 4.80847 4.83940 4.85703 4.94951 5.00845 5.05391 5.11964 5.18429 5.22726 5.24151 5.36160 5.42499 5.50995 5.61633 5.65146 5.85788 5.87607 6.32180 6.33708 6.60762 7.19445 7.37978 8.18229 8.38786 9.32454 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010724 B = 0.003050 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.450658 B = 9178.311961 C =10491.144531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 C -0.164 4.164 4 O -0.287 6.287 5 C 0.298 3.702 6 C 0.055 3.945 7 N -0.379 5.379 8 C -0.030 4.030 9 C 0.573 3.427 10 O -0.570 6.570 11 N -0.684 5.684 12 C 0.144 3.856 13 H 0.053 0.947 14 C -0.151 4.151 15 C -0.118 4.118 16 C 0.163 3.837 17 H 0.038 0.962 18 C -0.156 4.156 19 N -0.730 5.730 20 C -0.226 4.226 21 H 0.066 0.934 22 C -0.076 4.076 23 N -0.967 5.967 24 Si 0.961 3.039 25 H -0.287 1.287 26 H -0.295 1.295 27 H -0.276 1.276 28 C 0.153 3.847 29 N -0.508 5.508 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.220 0.780 38 H 0.415 0.585 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.044 0.956 45 H 0.075 0.925 46 H 0.028 0.972 47 H 0.371 0.629 48 H 0.248 0.752 49 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.365 21.247 11.069 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 C -0.222 4.222 4 O -0.191 6.191 5 C 0.113 3.887 6 C -0.114 4.114 7 N -0.096 5.096 8 C -0.167 4.167 9 C 0.358 3.642 10 O -0.449 6.449 11 N -0.335 5.335 12 C 0.040 3.960 13 H 0.071 0.929 14 C -0.209 4.209 15 C -0.156 4.156 16 C 0.055 3.945 17 H 0.056 0.944 18 C -0.215 4.215 19 N -0.371 5.371 20 C -0.359 4.359 21 H 0.084 0.916 22 C -0.269 4.269 23 N -0.618 5.618 24 Si 0.791 3.209 25 H -0.214 1.214 26 H -0.221 1.221 27 H -0.202 1.202 28 C -0.006 4.006 29 N -0.237 5.237 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.252 0.748 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.123 0.877 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.047 0.953 47 H 0.203 0.797 48 H 0.057 0.943 49 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.242 21.218 10.476 26.642 hybrid contribution -0.332 -0.779 -1.203 1.471 sum -12.574 20.438 9.273 25.726 Atomic orbital electron populations 1.21926 0.90413 1.03428 1.04519 1.22761 0.96344 0.93167 0.86533 1.22201 1.01021 0.94765 1.04193 1.86312 1.29664 1.63196 1.39960 1.21538 0.86912 0.89220 0.91024 1.23550 0.92571 0.95501 0.99777 1.68337 1.05616 1.12444 1.23238 1.21723 0.97969 1.04230 0.92827 1.17757 0.83743 0.78838 0.83863 1.90800 1.61517 1.62881 1.29697 1.45722 1.22498 1.51151 1.14119 1.20966 0.82390 0.92302 1.00350 0.92888 1.22086 0.97797 0.98723 1.02295 1.22084 1.00355 0.94318 0.98878 1.20506 0.96633 0.92051 0.85276 0.94380 1.22296 1.00665 0.99606 0.98960 1.42572 1.07027 1.67536 1.19931 1.19432 0.90010 1.26930 0.99511 0.91619 1.25405 0.98086 1.03695 0.99669 1.69783 1.18254 1.51622 1.22190 0.85397 0.78838 0.78388 0.78315 1.21424 1.22144 1.20244 1.23505 0.89498 0.88159 0.99413 1.68209 1.08677 1.21897 1.24936 0.90599 0.88447 0.92070 0.90345 0.93692 0.89087 0.90890 0.76399 0.74750 0.90725 0.94091 0.90097 0.90055 0.87661 0.93694 0.90571 0.95276 0.79694 0.94323 0.79944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.56 71.98 0.69 -0.77 16 2 C 0.07 1.01 3.11 30.59 0.10 1.11 16 3 C -0.16 -2.07 9.53 71.98 0.69 -1.38 16 4 O -0.29 -5.20 9.76 -87.75 -0.86 -6.05 16 5 C 0.30 6.38 7.47 84.92 0.63 7.01 16 6 C 0.05 1.06 11.18 85.07 0.95 2.01 16 7 N -0.38 -9.34 9.70 -183.92 -1.78 -11.12 16 8 C -0.03 -0.89 6.74 41.77 0.28 -0.61 16 9 C 0.57 20.35 7.77 86.80 0.67 21.03 16 10 O -0.57 -24.76 15.99 -3.85 -0.06 -24.82 16 11 N -0.68 -21.22 4.44 -445.34 -1.98 -23.20 16 12 C 0.14 4.72 2.52 44.99 0.11 4.84 16 13 H 0.05 2.36 7.05 -2.39 -0.02 2.34 16 14 C -0.15 -4.00 9.48 71.98 0.68 -3.32 16 15 C -0.12 -3.43 4.29 30.59 0.13 -3.30 16 16 C 0.16 6.15 2.84 44.99 0.13 6.28 16 17 H 0.04 1.50 7.56 -2.39 -0.02 1.48 16 18 C -0.16 -5.21 9.49 71.98 0.68 -4.53 16 19 N -0.73 -36.79 4.49 -322.94 -1.45 -38.24 16 20 C -0.23 -12.94 9.93 84.03 0.83 -12.10 16 21 H 0.07 3.68 7.83 -2.91 -0.02 3.65 16 22 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 23 N -0.97 -61.33 13.06 21.65 0.28 -61.05 16 24 Si 0.96 48.56 29.55 68.60 2.03 50.59 16 25 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 27 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 28 C 0.15 4.25 10.76 84.93 0.91 5.16 16 29 N -0.51 -12.59 8.80 -307.09 -2.70 -15.29 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 1.41 6.99 -2.38 -0.02 1.40 16 34 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.22 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.42 10.74 7.94 -92.71 -0.74 10.00 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.03 1.08 8.14 -2.38 -0.02 1.07 16 47 H 0.37 20.26 7.80 -92.71 -0.72 19.53 16 48 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 49 H 0.18 5.05 7.64 -2.91 -0.02 5.02 16 Total: -1.00 -74.94 410.47 0.94 -74.00 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.50 Total: 37.86 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 7.96 Total: 17.33 kcal Atomic # 7 Polarization: -141.27 SS G_CDS: -7.63 Total: -148.90 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.92 Total: -30.88 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal Total: -74.94 0.94 -74.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134376651.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.442 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds