Wall clock time and date at job start Tue Mar 31 2020 20:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46916 * 2 1 4 4 C 1.53004 * 109.47535 * 240.00182 * 2 1 3 5 5 C 1.53000 * 109.47211 * 174.99840 * 4 2 1 6 6 H 1.08996 * 109.46955 * 55.00556 * 5 4 2 7 7 C 1.52996 * 109.46950 * 175.00167 * 5 4 2 8 8 N 1.46494 * 109.47208 * 294.99871 * 5 4 2 9 9 C 1.34773 * 120.00176 * 154.99899 * 8 5 4 10 10 O 1.21287 * 120.00049 * 0.02562 * 9 8 5 11 11 C 1.50698 * 120.00605 * 179.97438 * 9 8 5 12 12 C 1.52999 * 109.47159 * 294.51952 * 11 9 8 13 13 C 1.53006 * 109.46510 * 54.51341 * 11 9 8 14 14 C 1.50699 * 109.47375 * 174.51013 * 11 9 8 15 15 C 1.38267 * 119.99222 * 294.12015 * 14 11 9 16 16 C 1.38223 * 120.05119 * 179.72218 * 15 14 11 17 17 C 1.38218 * 120.02630 * 0.55355 * 16 15 14 18 18 C 1.38439 * 119.97191 * 359.71882 * 17 16 15 19 19 F 1.35109 * 120.02632 * 180.02562 * 18 17 16 20 20 C 1.38175 * 119.98229 * 114.39298 * 14 11 9 21 21 N 1.46503 * 109.47188 * 120.00201 * 2 1 3 22 22 C 1.36932 * 119.99837 * 275.00091 * 21 2 1 23 23 H 1.08004 * 120.00132 * 0.02562 * 22 21 2 24 24 C 1.38815 * 120.00314 * 179.97438 * 22 21 2 25 25 N 1.31612 * 120.00275 * 179.72506 * 24 22 21 26 26 Si 1.86807 * 119.99396 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47125 * 269.72388 * 26 24 22 28 28 H 1.48501 * 109.47069 * 29.73036 * 26 24 22 29 29 H 1.48502 * 109.46736 * 149.72374 * 26 24 22 30 30 H 1.09003 * 109.47153 * 59.99981 * 1 2 3 31 31 H 1.09005 * 109.46997 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47165 * 299.99789 * 1 2 3 33 33 H 1.08993 * 109.46968 * 295.00141 * 4 2 1 34 34 H 1.08998 * 109.46824 * 54.99889 * 4 2 1 35 35 H 1.09001 * 109.47327 * 59.99556 * 7 5 4 36 36 H 1.08993 * 109.47535 * 180.02562 * 7 5 4 37 37 H 1.09007 * 109.47185 * 300.00151 * 7 5 4 38 38 H 0.97001 * 120.00133 * 335.00300 * 8 5 4 39 39 H 1.08991 * 109.47172 * 59.99488 * 12 11 9 40 40 H 1.09007 * 109.46880 * 179.97438 * 12 11 9 41 41 H 1.09002 * 109.46540 * 299.99058 * 12 11 9 42 42 H 1.09004 * 109.47176 * 60.00952 * 13 11 9 43 43 H 1.09007 * 109.46945 * 179.97438 * 13 11 9 44 44 H 1.08991 * 109.47484 * 300.00306 * 13 11 9 45 45 H 1.07997 * 119.97247 * 359.97438 * 15 14 11 46 46 H 1.07998 * 119.98732 * 180.27503 * 16 15 14 47 47 H 1.07994 * 120.01299 * 179.70041 * 17 16 15 48 48 H 1.07997 * 120.01778 * 359.97438 * 20 14 11 49 49 H 0.96994 * 119.99740 * 95.00377 * 21 2 1 50 50 H 0.97007 * 119.99892 * 180.27098 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3136 6 1 3.9954 -0.9922 -0.3868 7 6 4.0853 -1.4381 -2.4924 8 7 3.9480 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9360 0.4341 -0.5738 11 6 5.5555 2.6564 -1.2709 12 6 5.6524 2.9718 -2.7649 13 6 4.5018 3.5594 -0.6264 14 6 6.8920 2.8992 -0.6184 15 6 7.0193 2.7987 0.7547 16 6 8.2458 3.0155 1.3539 17 6 9.3442 3.3443 0.5820 18 6 9.2168 3.4508 -0.7924 19 9 10.2898 3.7717 -1.5480 20 6 7.9887 3.2278 -1.3922 21 7 2.0183 -0.6907 1.1962 22 6 2.1491 -0.0076 2.3757 23 1 1.8918 1.0402 2.4243 24 6 2.6113 -0.6620 3.5093 25 7 2.7421 -0.0041 4.6417 26 14 3.0543 -2.4749 3.4256 27 1 1.8581 -3.2922 3.7516 28 1 3.5229 -2.8073 2.0563 29 1 4.1341 -2.7661 4.4026 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.7518 -1.7714 -1.2056 34 1 1.6055 -0.2617 -2.1369 35 1 3.6547 -1.0592 -3.4193 36 1 5.1716 -1.3615 -2.5381 37 1 3.8002 -2.4818 -2.3595 38 1 3.3285 1.4129 -1.9027 39 1 4.6857 2.7962 -3.2368 40 1 5.9372 4.0155 -2.8982 41 1 6.4031 2.3285 -3.2240 42 1 4.4328 3.3348 0.4380 43 1 4.7872 4.6030 -0.7593 44 1 3.5351 3.3838 -1.0983 45 1 6.1605 2.5465 1.3591 46 1 8.3450 2.9323 2.4261 47 1 10.3014 3.5184 1.0509 48 1 7.8883 3.3102 -2.4643 49 1 2.2491 -1.6317 1.1525 50 1 3.0689 -0.4606 5.4328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135460229.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:24 Heat of formation + Delta-G solvation = -58.533940 kcal Electronic energy + Delta-G solvation = -30524.242972 eV Core-core repulsion = 26465.738238 eV Total energy + Delta-G solvation = -4058.504734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.88601 -40.58813 -38.73170 -36.98596 -35.23299 -34.56983 -32.14351 -31.00089 -30.59871 -29.52761 -29.18725 -27.49193 -26.42968 -24.30190 -23.34306 -22.57092 -22.33303 -20.84068 -19.86172 -19.56214 -17.80046 -17.47224 -16.68518 -16.16657 -16.08795 -15.87908 -15.55826 -14.91263 -14.81036 -14.28558 -14.18894 -13.98117 -13.92692 -13.60096 -13.40770 -13.05150 -12.69144 -12.60242 -12.45949 -12.38806 -12.25338 -12.11468 -12.06745 -11.99103 -11.88688 -11.73578 -11.71285 -11.24217 -11.07549 -10.92356 -10.80146 -10.67575 -10.47858 -10.27836 -9.96086 -9.56180 -9.45131 -8.94120 -8.90541 -8.75269 -8.58557 -7.23862 -5.74335 -3.08809 1.19009 1.25655 2.91712 3.30702 3.40861 3.43938 3.49160 3.74031 4.15023 4.42930 4.62808 4.63391 4.78207 4.89102 4.94145 4.99953 5.10316 5.23966 5.26066 5.30561 5.38485 5.44076 5.51727 5.54672 5.58148 5.62460 5.69437 5.75785 5.80723 5.84773 5.86965 5.91736 5.99690 6.09173 6.12019 6.14623 6.17268 6.24791 6.31071 6.41629 6.42121 6.53887 6.56412 6.73715 6.83633 6.93353 6.97202 7.75718 8.00658 8.44449 8.51997 9.23358 9.96652 10.15864 11.44141 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011269 B = 0.003943 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.115781 B = 7099.774754 C = 8339.708869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.143 3.857 6 H 0.100 0.900 7 C -0.161 4.161 8 N -0.714 5.714 9 C 0.527 3.473 10 O -0.525 6.525 11 C -0.043 4.043 12 C -0.142 4.142 13 C -0.141 4.141 14 C -0.028 4.028 15 C -0.096 4.096 16 C -0.088 4.088 17 C -0.156 4.156 18 C 0.089 3.911 19 F -0.145 7.145 20 C -0.151 4.151 21 N -0.745 5.745 22 C -0.237 4.237 23 H 0.088 0.912 24 C 0.007 3.993 25 N -0.935 5.935 26 Si 0.881 3.119 27 H -0.286 1.286 28 H -0.277 1.277 29 H -0.292 1.292 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.394 0.606 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.131 0.869 48 H 0.136 0.864 49 H 0.360 0.640 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.431 7.479 -17.038 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.072 0.928 4 C -0.173 4.173 5 C 0.039 3.961 6 H 0.118 0.882 7 C -0.220 4.220 8 N -0.365 5.365 9 C 0.311 3.689 10 O -0.400 6.400 11 C -0.046 4.046 12 C -0.200 4.200 13 C -0.198 4.198 14 C -0.028 4.028 15 C -0.114 4.114 16 C -0.106 4.106 17 C -0.175 4.175 18 C 0.070 3.930 19 F -0.124 7.124 20 C -0.170 4.170 21 N -0.389 5.389 22 C -0.367 4.367 23 H 0.105 0.895 24 C -0.189 4.189 25 N -0.583 5.583 26 Si 0.711 3.289 27 H -0.213 1.213 28 H -0.203 1.203 29 H -0.219 1.219 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.228 0.772 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.149 0.851 48 H 0.154 0.846 49 H 0.192 0.808 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.047 7.083 -16.505 18.951 hybrid contribution 0.195 -1.080 -0.151 1.107 sum 6.242 6.003 -16.656 18.773 Atomic orbital electron populations 1.22428 0.99040 1.00833 1.00303 1.20188 0.91689 0.95814 0.85509 0.92761 1.22218 0.93875 1.02110 0.99130 1.20991 0.94937 0.80583 0.99590 0.88244 1.22188 1.01622 1.00016 0.98161 1.45905 1.16447 1.11314 1.62853 1.20116 0.81906 0.89080 0.77748 1.90739 1.50955 1.56130 1.42154 1.19738 0.93904 0.93845 0.97139 1.21946 1.02805 1.02556 0.92659 1.21925 0.96811 0.98900 1.02179 1.19110 0.93041 0.97366 0.93329 1.21179 0.98429 0.97575 0.94245 1.21025 0.91798 0.97480 1.00334 1.21117 1.00462 1.03944 0.91979 1.17601 0.83620 1.02636 0.89160 1.91473 1.54239 1.90524 1.76168 1.21019 0.91185 1.03919 1.00857 1.42780 1.79561 1.09371 1.07147 1.18987 1.36823 0.95383 0.85520 0.89453 1.24614 1.01393 0.97269 0.95600 1.69689 1.52715 1.35470 1.00396 0.86604 0.77964 0.87135 0.77162 1.21309 1.20280 1.21853 0.94390 0.93659 0.92418 0.90810 0.91597 0.92943 0.92467 0.91947 0.77176 0.91520 0.91009 0.91744 0.90804 0.91327 0.91509 0.84885 0.84834 0.85079 0.84649 0.80770 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.49 37.16 0.35 -2.31 16 2 C 0.18 3.07 2.84 -67.93 -0.19 2.88 16 3 H 0.05 0.97 7.56 -51.93 -0.39 0.57 16 4 C -0.13 -1.83 4.29 -26.73 -0.11 -1.95 16 5 C 0.14 2.12 2.52 -67.94 -0.17 1.95 16 6 H 0.10 1.95 7.06 -51.93 -0.37 1.58 16 7 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 8 N -0.71 -9.47 4.28 -53.81 -0.23 -9.71 16 9 C 0.53 8.08 6.32 -10.99 -0.07 8.01 16 10 O -0.52 -10.49 15.21 5.55 0.08 -10.41 16 11 C -0.04 -0.51 0.72 -156.81 -0.11 -0.63 16 12 C -0.14 -1.25 7.11 37.16 0.26 -0.99 16 13 C -0.14 -1.52 8.07 37.16 0.30 -1.22 16 14 C -0.03 -0.38 4.23 -104.63 -0.44 -0.82 16 15 C -0.10 -1.42 8.38 -39.58 -0.33 -1.75 16 16 C -0.09 -1.17 10.04 -39.59 -0.40 -1.56 16 17 C -0.16 -1.94 10.03 -39.51 -0.40 -2.34 16 18 C 0.09 1.16 7.30 -39.42 -0.29 0.87 16 19 F -0.15 -1.90 17.27 2.25 0.04 -1.86 16 20 C -0.15 -1.90 8.97 -39.51 -0.35 -2.26 16 21 N -0.75 -16.75 4.30 -53.42 -0.23 -16.98 16 22 C -0.24 -6.47 10.41 -15.06 -0.16 -6.63 16 23 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 24 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 25 N -0.93 -29.15 13.97 55.49 0.78 -28.38 16 26 Si 0.88 22.45 27.74 -169.99 -4.72 17.73 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.71 6.51 56.52 0.37 -6.34 16 29 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.39 4.07 7.52 -40.82 -0.31 3.76 16 39 H 0.07 0.47 7.96 -51.93 -0.41 0.06 16 40 H 0.07 0.53 7.78 -51.92 -0.40 0.13 16 41 H 0.06 0.60 7.25 -51.93 -0.38 0.22 16 42 H 0.07 0.97 7.08 -51.93 -0.37 0.60 16 43 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.07 0.61 7.27 -51.93 -0.38 0.23 16 45 H 0.13 2.15 7.23 -52.49 -0.38 1.77 16 46 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 47 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 48 H 0.14 1.42 5.91 -52.49 -0.31 1.11 16 49 H 0.36 8.16 5.65 -40.82 -0.23 7.93 16 50 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 403.22 15.07 6.08 6.08 Total: -1.00 -33.60 403.22 -8.22 -41.83 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -8.17 Total: 12.03 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.86 Total: -10.33 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.32 Total: -55.06 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.72 Total: 17.73 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.60 -8.22 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135460229.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.707 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds