Wall clock time and date at job start Tue Mar 31 2020 20:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.47302 * 175.00153 * 4 2 1 6 6 H 1.09001 * 109.46926 * 54.99752 * 5 4 2 7 7 C 1.53004 * 109.47110 * 174.99777 * 5 4 2 8 8 N 1.46504 * 109.46864 * 294.99860 * 5 4 2 9 9 C 1.34774 * 119.99920 * 155.00185 * 8 5 4 10 10 O 1.21281 * 119.99898 * 359.97438 * 9 8 5 11 11 C 1.50700 * 120.00083 * 179.97438 * 9 8 5 12 12 C 1.52995 * 109.47117 * 179.97438 * 11 9 8 13 13 C 1.50708 * 109.46978 * 180.02562 * 12 11 9 14 14 N 1.31129 * 126.55117 * 90.00074 * 13 12 11 15 15 C 1.34494 * 105.61246 * 180.02562 * 14 13 12 16 16 C 1.50707 * 126.28500 * 179.97438 * 15 14 13 17 17 C 1.53004 * 117.49578 * 188.62355 * 16 15 14 18 18 C 1.52992 * 117.50152 * 119.99998 * 16 15 14 19 19 N 1.29944 * 107.42596 * 0.02562 * 15 14 13 20 20 O 1.21301 * 110.25263 * 359.70587 * 19 15 14 21 21 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 22 22 C 1.36936 * 120.00314 * 274.99849 * 21 2 1 23 23 H 1.08001 * 120.00159 * 0.02562 * 22 21 2 24 24 C 1.38811 * 119.99842 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 179.72505 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 31 31 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 32 32 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47383 * 294.99883 * 4 2 1 34 34 H 1.09007 * 109.47501 * 54.99867 * 4 2 1 35 35 H 1.09008 * 109.46288 * 179.97438 * 7 5 4 36 36 H 1.08992 * 109.47192 * 299.99633 * 7 5 4 37 37 H 1.09001 * 109.47246 * 60.00170 * 7 5 4 38 38 H 0.97001 * 119.99979 * 334.99667 * 8 5 4 39 39 H 1.09000 * 109.47236 * 300.00198 * 11 9 8 40 40 H 1.09009 * 109.47077 * 59.99924 * 11 9 8 41 41 H 1.08998 * 109.47709 * 299.99946 * 12 11 9 42 42 H 1.09001 * 109.46839 * 60.00652 * 12 11 9 43 43 H 1.09000 * 115.54458 * 334.32374 * 16 15 14 44 44 H 1.09001 * 117.49693 * 359.97438 * 17 16 15 45 45 H 1.09001 * 117.49456 * 145.01991 * 17 16 15 46 46 H 1.09000 * 117.50055 * 214.97996 * 18 16 15 47 47 H 1.09007 * 117.49657 * 359.97323 * 18 16 15 48 48 H 0.97000 * 120.00040 * 94.99981 * 21 2 1 49 49 H 0.96999 * 119.99889 * 180.27497 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3867 7 6 4.0851 -1.4384 -2.4924 8 7 3.9480 0.7894 -1.4924 9 6 5.1612 1.2135 -1.0867 10 8 5.9356 0.4341 -0.5733 11 6 5.5555 2.6563 -1.2711 12 6 6.9702 2.8715 -0.7297 13 6 7.3643 4.3145 -0.9135 14 7 7.1708 5.2916 -0.0608 15 6 7.6802 6.3898 -0.6468 16 6 7.7028 7.7808 -0.0675 17 6 8.1484 8.9211 -0.9852 18 6 9.0688 8.4386 0.1377 19 7 8.1483 6.0312 -1.8048 20 8 7.9817 4.8418 -1.9751 21 7 2.0183 -0.6905 1.1962 22 6 2.1491 -0.0074 2.3757 23 1 1.8919 1.0404 2.4243 24 6 2.6123 -0.6617 3.5090 25 7 2.7431 -0.0037 4.6414 26 14 3.0578 -2.4738 3.4249 27 1 1.8628 -3.2929 3.7507 28 1 3.5267 -2.8052 2.0554 29 1 4.1381 -2.7639 4.4016 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1370 35 1 5.1715 -1.3610 -2.5385 36 1 3.8001 -2.4819 -2.3594 37 1 3.6546 -1.0594 -3.4194 38 1 3.3285 1.4129 -1.9028 39 1 5.5298 2.9073 -2.3315 40 1 4.8583 3.2956 -0.7294 41 1 6.9955 2.6207 0.3307 42 1 7.6676 2.2323 -1.2711 43 1 6.9245 7.9980 0.6642 44 1 8.4256 8.6651 -2.0078 45 1 7.6632 9.8888 -0.8574 46 1 9.1893 9.0888 1.0042 47 1 9.9513 7.8650 -0.1459 48 1 2.2490 -1.6317 1.1527 49 1 3.0706 -0.4598 5.4323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135648945.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:05 Heat of formation + Delta-G solvation = 56.737642 kcal Electronic energy + Delta-G solvation = -28850.379675 eV Core-core repulsion = 24816.793453 eV Total energy + Delta-G solvation = -4033.586222 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.76379 -39.76829 -38.00394 -37.14078 -35.78130 -34.65586 -34.12768 -32.20095 -31.47381 -30.46541 -29.21731 -26.47148 -25.89061 -25.51304 -23.38683 -23.20432 -22.78790 -21.33257 -20.52640 -20.24092 -19.83542 -18.28939 -17.92555 -17.64384 -16.98368 -16.02431 -15.97952 -15.63756 -15.22103 -14.80363 -14.50394 -14.22755 -13.79237 -13.65228 -13.48366 -13.11383 -12.79792 -12.64192 -12.64091 -12.47841 -12.39743 -12.27389 -12.10314 -11.98783 -11.95614 -11.71808 -11.40692 -11.24245 -11.21633 -10.94962 -10.92292 -10.89757 -10.66972 -10.49484 -10.27320 -9.95499 -9.93324 -9.62517 -9.53938 -8.88923 -8.81600 -7.22182 -5.71646 -3.06725 0.92548 1.95144 2.57274 2.83515 3.20216 3.39517 3.42376 3.44744 3.45097 3.50569 3.87561 4.37668 4.43731 4.53428 4.57669 4.64569 4.80113 4.89975 4.98878 5.11953 5.20439 5.23634 5.25633 5.33568 5.34808 5.51360 5.52988 5.57023 5.59105 5.65716 5.68542 5.75256 5.78849 5.80960 5.85915 5.86167 5.99674 6.17509 6.22890 6.31253 6.41890 6.52844 6.71422 6.81622 6.98116 7.68172 7.99245 8.03181 8.42536 8.47085 9.25495 9.98441 10.17397 11.46850 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.002560 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.083412 B =10932.854887 C =11951.418845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.176 3.824 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.142 3.858 6 H 0.101 0.899 7 C -0.162 4.162 8 N -0.715 5.715 9 C 0.520 3.480 10 O -0.534 6.534 11 C -0.138 4.138 12 C -0.013 4.013 13 C 0.191 3.809 14 N -0.472 5.472 15 C 0.201 3.799 16 C -0.079 4.079 17 C -0.159 4.159 18 C -0.157 4.157 19 N -0.388 5.388 20 O 0.075 5.925 21 N -0.745 5.745 22 C -0.238 4.238 23 H 0.088 0.912 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.883 3.117 27 H -0.287 1.287 28 H -0.276 1.276 29 H -0.292 1.292 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.396 0.604 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.137 0.863 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.360 0.640 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.238 11.136 -17.995 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.173 4.173 5 C 0.038 3.962 6 H 0.119 0.881 7 C -0.220 4.220 8 N -0.366 5.366 9 C 0.306 3.694 10 O -0.410 6.410 11 C -0.179 4.179 12 C -0.053 4.053 13 C -0.029 4.029 14 N -0.205 5.205 15 C -0.071 4.071 16 C -0.099 4.099 17 C -0.197 4.197 18 C -0.195 4.195 19 N -0.097 5.097 20 O 0.017 5.983 21 N -0.388 5.388 22 C -0.368 4.368 23 H 0.105 0.895 24 C -0.190 4.190 25 N -0.582 5.582 26 Si 0.713 3.287 27 H -0.213 1.213 28 H -0.202 1.202 29 H -0.218 1.218 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.230 0.770 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.155 0.845 44 H 0.121 0.879 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.115 0.885 48 H 0.192 0.808 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.050 11.474 -17.609 22.506 hybrid contribution -0.162 -1.179 -0.026 1.191 sum 7.888 10.295 -17.636 21.891 Atomic orbital electron populations 1.22428 0.99025 1.00830 1.00320 1.20195 0.91745 0.95831 0.85527 0.92766 1.22221 0.93836 1.02146 0.99143 1.21018 0.95037 0.80446 0.99683 0.88121 1.22191 1.01644 1.00053 0.98107 1.45915 1.16469 1.11582 1.62658 1.20148 0.82096 0.89360 0.77815 1.90741 1.51120 1.56525 1.42639 1.21607 0.96844 0.95793 1.03681 1.20008 0.96877 0.81855 1.06512 1.28903 0.92345 0.99317 0.82373 1.71941 1.21808 0.97973 1.28767 1.24811 0.96961 0.96833 0.88512 1.20092 1.01442 0.84574 1.03793 1.23077 1.02670 0.97301 0.96625 1.23077 0.92677 1.02624 1.01115 1.74556 1.22505 0.93098 1.19505 1.85297 1.56914 1.16036 1.40045 1.42775 1.79577 1.09350 1.07140 1.18993 1.36883 0.95400 0.85535 0.89458 1.24645 1.01394 0.97376 0.95619 1.69698 1.52604 1.35490 1.00420 0.86574 0.77954 0.86998 0.77148 1.21341 1.20244 1.21842 0.92417 0.94389 0.93644 0.90766 0.91557 0.92364 0.91887 0.92931 0.76989 0.88419 0.87700 0.85812 0.87112 0.84485 0.87880 0.87397 0.87268 0.88467 0.80767 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.49 37.16 0.35 -2.34 16 2 C 0.18 3.08 2.84 -67.93 -0.19 2.88 16 3 H 0.05 0.98 7.56 -51.93 -0.39 0.59 16 4 C -0.13 -1.81 4.29 -26.74 -0.11 -1.92 16 5 C 0.14 2.03 2.52 -67.93 -0.17 1.86 16 6 H 0.10 1.91 7.05 -51.93 -0.37 1.54 16 7 C -0.16 -1.92 9.48 37.16 0.35 -1.57 16 8 N -0.72 -8.94 4.45 -53.80 -0.24 -9.18 16 9 C 0.52 7.20 7.79 -10.99 -0.09 7.12 16 10 O -0.53 -9.65 15.64 5.56 0.09 -9.56 16 11 C -0.14 -1.39 5.68 -27.89 -0.16 -1.54 16 12 C -0.01 -0.14 5.13 -27.88 -0.14 -0.28 16 13 C 0.19 2.25 7.77 -13.06 -0.10 2.15 16 14 N -0.47 -6.45 11.55 -9.86 -0.11 -6.56 16 15 C 0.20 2.52 7.74 -156.37 -1.21 1.31 16 16 C -0.08 -0.76 6.33 -91.77 -0.58 -1.34 16 17 C -0.16 -1.18 10.14 -26.73 -0.27 -1.45 16 18 C -0.16 -1.19 10.23 -26.73 -0.27 -1.46 16 19 N -0.39 -4.92 11.77 30.90 0.36 -4.56 16 20 O 0.08 0.89 11.31 18.10 0.20 1.10 16 21 N -0.75 -16.85 4.30 -53.43 -0.23 -17.07 16 22 C -0.24 -6.60 10.41 -15.06 -0.16 -6.75 16 23 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 25 N -0.93 -29.60 13.97 55.49 0.78 -28.82 16 26 Si 0.88 22.50 27.74 -169.99 -4.72 17.78 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.63 6.51 56.52 0.37 -6.27 16 29 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.40 3.76 8.60 -40.82 -0.35 3.41 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 41 H 0.12 1.53 8.10 -51.93 -0.42 1.10 16 42 H 0.11 1.02 8.10 -51.93 -0.42 0.60 16 43 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.10 0.85 7.91 -51.93 -0.41 0.44 16 45 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.10 0.81 8.14 -51.92 -0.42 0.38 16 48 H 0.36 8.14 5.65 -40.82 -0.23 7.91 16 49 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 410.15 15.07 6.18 6.18 Total: -1.00 -35.37 410.15 -8.64 -44.02 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -8.10 Total: 9.98 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.85 Total: -3.29 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: 0.56 Total: -66.20 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.29 Total: -8.46 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.72 Total: 17.78 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.37 -8.64 -44.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135648945.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.754 kcal (2) G-P(sol) polarization free energy of solvation -35.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds