Wall clock time and date at job start Tue Mar 31 2020 20:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.47302 * 175.00153 * 4 2 1 6 6 H 1.09001 * 109.46926 * 54.99752 * 5 4 2 7 7 C 1.53004 * 109.47110 * 174.99777 * 5 4 2 8 8 N 1.46504 * 109.46864 * 294.99860 * 5 4 2 9 9 C 1.34774 * 119.99920 * 155.00185 * 8 5 4 10 10 O 1.21281 * 119.99898 * 359.97438 * 9 8 5 11 11 C 1.50700 * 120.00083 * 179.97438 * 9 8 5 12 12 C 1.52995 * 109.47117 * 179.97438 * 11 9 8 13 13 C 1.50708 * 109.46978 * 180.02562 * 12 11 9 14 14 N 1.31129 * 126.55117 * 90.00074 * 13 12 11 15 15 C 1.34494 * 105.61246 * 180.02562 * 14 13 12 16 16 C 1.50707 * 126.28500 * 179.97438 * 15 14 13 17 17 C 1.53004 * 117.49578 * 188.62355 * 16 15 14 18 18 C 1.52992 * 117.50152 * 119.99998 * 16 15 14 19 19 N 1.29944 * 107.42596 * 0.02562 * 15 14 13 20 20 O 1.21301 * 110.25263 * 359.70587 * 19 15 14 21 21 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 22 22 C 1.36936 * 120.00314 * 274.99849 * 21 2 1 23 23 H 1.08001 * 120.00159 * 0.02562 * 22 21 2 24 24 C 1.38811 * 119.99842 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 179.72505 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 31 31 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 32 32 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47383 * 294.99883 * 4 2 1 34 34 H 1.09007 * 109.47501 * 54.99867 * 4 2 1 35 35 H 1.09008 * 109.46288 * 179.97438 * 7 5 4 36 36 H 1.08992 * 109.47192 * 299.99633 * 7 5 4 37 37 H 1.09001 * 109.47246 * 60.00170 * 7 5 4 38 38 H 0.97001 * 119.99979 * 334.99667 * 8 5 4 39 39 H 1.09000 * 109.47236 * 300.00198 * 11 9 8 40 40 H 1.09009 * 109.47077 * 59.99924 * 11 9 8 41 41 H 1.08998 * 109.47709 * 299.99946 * 12 11 9 42 42 H 1.09001 * 109.46839 * 60.00652 * 12 11 9 43 43 H 1.09000 * 115.54458 * 334.32374 * 16 15 14 44 44 H 1.09001 * 117.49693 * 359.97438 * 17 16 15 45 45 H 1.09001 * 117.49456 * 145.01991 * 17 16 15 46 46 H 1.09000 * 117.50055 * 214.97996 * 18 16 15 47 47 H 1.09007 * 117.49657 * 359.97323 * 18 16 15 48 48 H 0.97000 * 120.00040 * 94.99981 * 21 2 1 49 49 H 0.96999 * 119.99889 * 180.27497 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3867 7 6 4.0851 -1.4384 -2.4924 8 7 3.9480 0.7894 -1.4924 9 6 5.1612 1.2135 -1.0867 10 8 5.9356 0.4341 -0.5733 11 6 5.5555 2.6563 -1.2711 12 6 6.9702 2.8715 -0.7297 13 6 7.3643 4.3145 -0.9135 14 7 7.1708 5.2916 -0.0608 15 6 7.6802 6.3898 -0.6468 16 6 7.7028 7.7808 -0.0675 17 6 8.1484 8.9211 -0.9852 18 6 9.0688 8.4386 0.1377 19 7 8.1483 6.0312 -1.8048 20 8 7.9817 4.8418 -1.9751 21 7 2.0183 -0.6905 1.1962 22 6 2.1491 -0.0074 2.3757 23 1 1.8919 1.0404 2.4243 24 6 2.6123 -0.6617 3.5090 25 7 2.7431 -0.0037 4.6414 26 14 3.0578 -2.4738 3.4249 27 1 1.8628 -3.2929 3.7507 28 1 3.5267 -2.8052 2.0554 29 1 4.1381 -2.7639 4.4016 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1370 35 1 5.1715 -1.3610 -2.5385 36 1 3.8001 -2.4819 -2.3594 37 1 3.6546 -1.0594 -3.4194 38 1 3.3285 1.4129 -1.9028 39 1 5.5298 2.9073 -2.3315 40 1 4.8583 3.2956 -0.7294 41 1 6.9955 2.6207 0.3307 42 1 7.6676 2.2323 -1.2711 43 1 6.9245 7.9980 0.6642 44 1 8.4256 8.6651 -2.0078 45 1 7.6632 9.8888 -0.8574 46 1 9.1893 9.0888 1.0042 47 1 9.9513 7.8650 -0.1459 48 1 2.2490 -1.6317 1.1527 49 1 3.0706 -0.4598 5.4323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135648945.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:04 Heat of formation + Delta-G solvation = 31.372023 kcal Electronic energy + Delta-G solvation = -28851.479611 eV Core-core repulsion = 24816.793453 eV Total energy + Delta-G solvation = -4034.686158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.71216 -40.88981 -38.70397 -38.48290 -36.74990 -36.09684 -35.08778 -34.05546 -32.62057 -31.63765 -30.86680 -27.58992 -26.85839 -26.36386 -25.31104 -24.18636 -23.38295 -22.44172 -21.63720 -21.23815 -21.17490 -19.69397 -19.22909 -18.80890 -18.06336 -17.18843 -16.76635 -16.69937 -16.50351 -16.04419 -15.85042 -15.41170 -15.24041 -14.72697 -14.63001 -14.54986 -14.15245 -13.98705 -13.71722 -13.57308 -13.40147 -13.33343 -13.17739 -13.10788 -12.95290 -12.78434 -12.59730 -12.53260 -12.36247 -12.25724 -12.17038 -11.96112 -11.83517 -11.76843 -11.63977 -11.56536 -11.40962 -10.94969 -10.87129 -10.67170 -9.92460 -9.24102 -7.98697 -5.28639 -0.01149 1.02912 1.35618 1.40161 1.45970 1.62120 1.75683 2.31077 2.50337 2.51241 2.72517 3.03587 3.34426 3.57990 3.68805 3.70234 3.76096 3.84920 3.92796 3.96765 4.10652 4.14149 4.27909 4.40002 4.48175 4.57364 4.58327 4.64691 4.70624 4.72552 4.81014 4.82599 4.86688 4.90614 4.95227 4.96579 5.01184 5.04347 5.10778 5.11801 5.26880 5.37087 5.43412 5.62849 5.69515 5.83223 6.26167 6.68053 7.05762 7.14124 7.40215 7.93200 8.08498 9.23454 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.002560 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.083412 B =10932.854887 C =11951.418845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.045 0.955 4 C -0.121 4.121 5 C 0.141 3.859 6 H 0.049 0.951 7 C -0.152 4.152 8 N -0.706 5.706 9 C 0.513 3.487 10 O -0.583 6.583 11 C -0.126 4.126 12 C -0.008 4.008 13 C 0.201 3.799 14 N -0.504 5.504 15 C 0.195 3.805 16 C -0.105 4.105 17 C -0.144 4.144 18 C -0.149 4.149 19 N -0.400 5.400 20 O 0.077 5.923 21 N -0.748 5.748 22 C -0.210 4.210 23 H 0.054 0.946 24 C -0.069 4.069 25 N -0.987 5.987 26 Si 0.948 3.052 27 H -0.278 1.278 28 H -0.254 1.254 29 H -0.304 1.304 30 H 0.024 0.976 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.414 0.586 39 H 0.136 0.864 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.125 0.875 43 H 0.143 0.857 44 H 0.093 0.907 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.087 0.913 48 H 0.361 0.639 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.449 11.123 -21.301 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.064 0.936 4 C -0.160 4.160 5 C 0.036 3.964 6 H 0.067 0.933 7 C -0.210 4.210 8 N -0.358 5.358 9 C 0.301 3.699 10 O -0.463 6.463 11 C -0.167 4.167 12 C -0.048 4.048 13 C -0.019 4.019 14 N -0.238 5.238 15 C -0.077 4.077 16 C -0.125 4.125 17 C -0.182 4.182 18 C -0.187 4.187 19 N -0.109 5.109 20 O 0.020 5.980 21 N -0.392 5.392 22 C -0.342 4.342 23 H 0.072 0.928 24 C -0.260 4.260 25 N -0.639 5.639 26 Si 0.776 3.224 27 H -0.204 1.204 28 H -0.179 1.179 29 H -0.232 1.232 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.251 0.749 39 H 0.154 0.846 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.144 0.856 43 H 0.161 0.839 44 H 0.112 0.888 45 H 0.151 0.849 46 H 0.149 0.851 47 H 0.105 0.895 48 H 0.194 0.806 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.205 11.467 -21.015 25.001 hybrid contribution 0.042 -1.067 0.939 1.422 sum 7.248 10.401 -20.076 23.744 Atomic orbital electron populations 1.22297 0.97452 1.01295 1.00740 1.20525 0.92706 0.95552 0.85369 0.93647 1.22137 0.92976 1.02534 0.98303 1.20900 0.95485 0.81451 0.98574 0.93284 1.22088 1.00667 1.00130 0.98096 1.45856 1.16401 1.11522 1.62051 1.20758 0.81944 0.90407 0.76834 1.90722 1.52622 1.58115 1.44853 1.21562 0.96060 0.93057 1.06003 1.19968 0.97912 0.81436 1.05459 1.28963 0.91602 0.99244 0.82084 1.71954 1.23102 0.98917 1.29802 1.25345 0.96258 0.97729 0.88353 1.20336 1.03014 0.83886 1.05260 1.23155 1.01847 0.97326 0.95831 1.23169 0.91309 1.02146 1.02075 1.74537 1.23216 0.93350 1.19821 1.85276 1.56882 1.15930 1.39905 1.42835 1.79739 1.09439 1.07183 1.18953 1.33845 0.94125 0.87264 0.92764 1.25419 1.03013 1.02043 0.95494 1.69881 1.55291 1.37428 1.01300 0.85502 0.77428 0.81666 0.77764 1.20380 1.17914 1.23182 0.95673 0.90313 0.93135 0.89888 0.87142 0.93954 0.91212 0.89982 0.74923 0.84633 0.87641 0.88027 0.85636 0.83943 0.88819 0.84941 0.85090 0.89475 0.80575 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.72 9.49 71.98 0.68 -4.03 16 2 C 0.17 5.46 2.84 44.99 0.13 5.59 16 3 H 0.05 1.58 7.56 -2.39 -0.02 1.56 16 4 C -0.12 -2.80 4.29 30.59 0.13 -2.67 16 5 C 0.14 3.73 2.52 44.99 0.11 3.84 16 6 H 0.05 1.85 7.05 -2.39 -0.02 1.83 16 7 C -0.15 -3.16 9.48 71.98 0.68 -2.48 16 8 N -0.71 -16.29 4.45 -442.53 -1.97 -18.26 16 9 C 0.51 13.89 7.79 87.66 0.68 14.57 16 10 O -0.58 -21.50 15.64 -3.03 -0.05 -21.55 16 11 C -0.13 -2.38 5.68 29.85 0.17 -2.21 16 12 C -0.01 -0.18 5.13 29.85 0.15 -0.03 16 13 C 0.20 4.72 7.77 88.38 0.69 5.40 16 14 N -0.50 -13.95 11.55 -303.18 -3.50 -17.45 16 15 C 0.19 4.87 7.74 138.47 1.07 5.94 16 16 C -0.11 -1.95 6.33 -11.54 -0.07 -2.02 16 17 C -0.14 -1.92 10.14 30.60 0.31 -1.61 16 18 C -0.15 -2.09 10.23 30.59 0.31 -1.77 16 19 N -0.40 -10.00 11.77 -60.32 -0.71 -10.71 16 20 O 0.08 1.79 11.31 74.82 0.85 2.64 16 21 N -0.75 -33.45 4.30 -322.95 -1.39 -34.84 16 22 C -0.21 -11.93 10.41 84.03 0.87 -11.06 16 23 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 24 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 25 N -0.99 -65.13 13.97 21.65 0.30 -64.82 16 26 Si 0.95 47.40 27.74 68.60 1.90 49.31 16 27 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.25 -11.62 6.51 99.48 0.65 -10.97 16 29 H -0.30 -15.76 7.11 99.48 0.71 -15.05 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.41 6.52 8.60 -92.71 -0.80 5.72 16 39 H 0.14 1.54 8.14 -2.39 -0.02 1.53 16 40 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.10 2.66 8.10 -2.39 -0.02 2.64 16 42 H 0.13 2.28 8.10 -2.39 -0.02 2.26 16 43 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.09 1.45 7.91 -2.39 -0.02 1.43 16 45 H 0.13 1.09 8.14 -2.39 -0.02 1.08 16 46 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 48 H 0.36 15.91 5.65 -92.71 -0.52 15.39 16 49 H 0.25 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -81.87 410.15 1.41 -80.46 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -0.42 Total: 31.47 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 6.39 Total: 3.77 kcal Atomic # 7 Polarization: -138.82 SS G_CDS: -7.26 Total: -146.09 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.80 Total: -18.91 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.90 Total: 49.31 kcal Total: -81.87 1.41 -80.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135648945.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.828 kcal (2) G-P(sol) polarization free energy of solvation -81.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds