Wall clock time and date at job start Tue Mar 31 2020 20:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47128 * 2 1 4 4 C 1.53000 * 109.47119 * 240.00271 * 2 1 3 5 5 C 1.53000 * 109.47214 * 174.99805 * 4 2 1 6 6 H 1.08999 * 109.47446 * 305.00593 * 5 4 2 7 7 C 1.52995 * 109.47146 * 184.99844 * 5 4 2 8 8 N 1.46506 * 109.46808 * 65.00388 * 5 4 2 9 9 C 1.34777 * 119.99873 * 205.00186 * 8 5 4 10 10 O 1.21284 * 119.99754 * 359.97438 * 9 8 5 11 11 C 1.50696 * 120.00137 * 179.97438 * 9 8 5 12 12 C 1.53002 * 109.47300 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.46919 * 179.97438 * 12 11 9 14 14 N 1.31131 * 126.55012 * 89.71356 * 13 12 11 15 15 C 1.34500 * 105.61312 * 179.91200 * 14 13 12 16 16 C 1.50707 * 126.28721 * 180.12193 * 15 14 13 17 17 C 1.52991 * 117.49758 * 188.90997 * 16 15 14 18 18 C 1.52993 * 60.00316 * 252.51385 * 17 16 15 19 19 N 1.29948 * 107.42514 * 0.35273 * 15 14 13 20 20 O 1.21300 * 110.24812 * 359.77471 * 19 15 14 21 21 N 1.46503 * 109.47081 * 120.00579 * 2 1 3 22 22 C 1.36938 * 119.99497 * 274.99560 * 21 2 1 23 23 H 1.07996 * 120.00250 * 0.02562 * 22 21 2 24 24 C 1.38813 * 119.99578 * 179.97438 * 22 21 2 25 25 N 1.31614 * 120.00175 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99797 * 180.02562 * 24 22 21 27 27 H 1.48509 * 109.46888 * 90.00572 * 26 24 22 28 28 H 1.48503 * 109.47131 * 209.99957 * 26 24 22 29 29 H 1.48495 * 109.47670 * 330.00605 * 26 24 22 30 30 H 1.09001 * 109.47416 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47230 * 299.99729 * 1 2 3 32 32 H 1.09006 * 109.47046 * 59.99464 * 1 2 3 33 33 H 1.09004 * 109.46980 * 55.00269 * 4 2 1 34 34 H 1.09003 * 109.47135 * 295.00261 * 4 2 1 35 35 H 1.09002 * 109.47311 * 300.00221 * 7 5 4 36 36 H 1.09002 * 109.46959 * 60.00507 * 7 5 4 37 37 H 1.09003 * 109.47335 * 180.02562 * 7 5 4 38 38 H 0.96995 * 120.00050 * 24.72300 * 8 5 4 39 39 H 1.09004 * 109.47043 * 299.99732 * 11 9 8 40 40 H 1.09000 * 109.46978 * 59.99653 * 11 9 8 41 41 H 1.09000 * 109.46497 * 299.99731 * 12 11 9 42 42 H 1.08987 * 109.47025 * 59.99846 * 12 11 9 43 43 H 1.08997 * 115.54908 * 334.62688 * 16 15 14 44 44 H 1.09005 * 117.50193 * 0.02562 * 17 16 15 45 45 H 1.09004 * 117.50196 * 145.02421 * 17 16 15 46 46 H 1.08997 * 117.50093 * 252.51042 * 18 17 16 47 47 H 1.09001 * 117.51787 * 107.48290 * 18 17 16 48 48 H 0.96990 * 119.99946 * 94.99857 * 21 2 1 49 49 H 0.96999 * 120.00027 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8571 0.4359 -1.2677 7 6 4.0644 -1.2249 -2.6241 8 7 4.1537 -1.3343 -0.1825 9 6 5.3747 -0.9912 0.2733 10 8 5.9862 -0.0858 -0.2534 11 6 5.9802 -1.7324 1.4373 12 6 7.3599 -1.1500 1.7508 13 6 7.9650 -1.8909 2.9152 14 7 8.7155 -2.9644 2.8527 15 6 9.0223 -3.2663 4.1270 16 6 9.8723 -4.4214 4.5902 17 6 9.9234 -4.7026 6.0932 18 6 11.1363 -4.0932 5.3873 19 7 8.4470 -2.3819 4.8857 20 8 7.8347 -1.5828 4.2090 21 7 2.0183 -0.6907 1.1961 22 6 2.1491 -0.0076 2.3757 23 1 1.8920 1.0402 2.4243 24 6 2.6113 -0.6622 3.5092 25 7 2.9243 -1.9392 3.4500 26 14 2.7891 0.2694 5.1185 27 1 1.5211 0.1781 5.8860 28 1 3.8934 -0.3240 5.9146 29 1 3.0941 1.6947 4.8344 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -0.2616 -2.1370 34 1 1.7516 -1.7715 -1.2057 35 1 3.7722 -2.2740 -2.6701 36 1 3.6263 -0.6884 -3.4658 37 1 5.1508 -1.1484 -2.6699 38 1 3.6630 -2.0559 0.2410 39 1 5.3348 -1.6285 2.3095 40 1 6.0808 -2.7876 1.1833 41 1 8.0050 -1.2543 0.8784 42 1 7.2597 -0.0948 2.0045 43 1 9.9104 -5.2770 3.9161 44 1 9.3420 -4.0525 6.7470 45 1 9.9951 -5.7437 6.4083 46 1 12.0059 -4.7332 5.2380 47 1 11.3533 -3.0418 5.5764 48 1 2.2490 -1.6318 1.1525 49 1 3.2476 -2.3965 4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135648946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:10 Heat of formation + Delta-G solvation = 58.275312 kcal Electronic energy + Delta-G solvation = -29882.818625 eV Core-core repulsion = 25849.299082 eV Total energy + Delta-G solvation = -4033.519543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.41869 -39.39239 -37.79933 -36.94161 -35.45550 -34.28539 -33.69715 -32.30714 -31.09627 -30.21169 -28.55019 -26.36636 -25.48442 -25.21978 -23.68275 -22.97880 -22.61315 -21.10370 -20.25129 -20.16836 -19.45830 -17.89141 -17.59359 -17.20585 -16.54706 -15.81278 -15.72301 -15.14188 -15.00070 -14.83911 -14.13912 -13.93816 -13.68003 -13.60105 -13.08049 -12.90154 -12.73926 -12.49297 -12.22560 -12.18196 -12.09231 -12.02493 -11.84989 -11.77084 -11.73639 -11.66075 -11.06102 -10.99665 -10.86636 -10.83977 -10.74690 -10.68675 -10.64469 -10.37312 -10.25598 -9.91809 -9.70320 -9.62943 -9.21663 -8.98219 -8.37049 -6.98126 -5.84025 -3.10075 1.27758 2.22928 2.96245 3.29295 3.41926 3.48996 3.49496 3.51318 3.61170 3.86985 4.16016 4.56655 4.57306 4.66174 4.72214 5.06547 5.11779 5.23012 5.33151 5.34909 5.41498 5.45559 5.50187 5.52441 5.59547 5.67462 5.77113 5.79686 5.86431 5.88262 5.90083 5.97154 6.00222 6.03723 6.13636 6.19083 6.23337 6.35481 6.40216 6.45837 6.55011 6.59500 6.84206 7.03899 7.17755 7.67612 8.17410 8.31411 8.35275 8.87385 9.47362 10.01251 10.37005 11.37961 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011689 B = 0.003481 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.880314 B = 8042.185461 C = 9790.631946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.048 0.952 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.083 0.917 7 C -0.162 4.162 8 N -0.695 5.695 9 C 0.536 3.464 10 O -0.567 6.567 11 C -0.143 4.143 12 C -0.010 4.010 13 C 0.200 3.800 14 N -0.483 5.483 15 C 0.195 3.805 16 C -0.075 4.075 17 C -0.159 4.159 18 C -0.158 4.158 19 N -0.386 5.386 20 O 0.083 5.917 21 N -0.716 5.716 22 C -0.226 4.226 23 H 0.067 0.933 24 C -0.009 4.009 25 N -0.935 5.935 26 Si 0.895 3.105 27 H -0.292 1.292 28 H -0.290 1.290 29 H -0.283 1.283 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.406 0.594 39 H 0.128 0.872 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.135 0.865 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.378 0.622 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 -4.427 -5.124 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.059 3.941 3 H 0.066 0.934 4 C -0.172 4.172 5 C 0.045 3.955 6 H 0.101 0.899 7 C -0.221 4.221 8 N -0.347 5.347 9 C 0.323 3.677 10 O -0.447 6.447 11 C -0.184 4.184 12 C -0.050 4.050 13 C -0.020 4.020 14 N -0.217 5.217 15 C -0.078 4.078 16 C -0.095 4.095 17 C -0.197 4.197 18 C -0.197 4.197 19 N -0.094 5.094 20 O 0.025 5.975 21 N -0.360 5.360 22 C -0.357 4.357 23 H 0.085 0.915 24 C -0.205 4.205 25 N -0.584 5.584 26 Si 0.726 3.274 27 H -0.220 1.220 28 H -0.216 1.216 29 H -0.209 1.209 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.244 0.756 39 H 0.146 0.854 40 H 0.110 0.890 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.152 0.848 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.115 0.885 48 H 0.213 0.787 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.730 -4.000 -4.695 11.520 hybrid contribution -0.426 -0.118 1.172 1.252 sum 9.304 -4.118 -3.523 10.767 Atomic orbital electron populations 1.22426 0.99357 1.00705 0.99911 1.20288 0.91642 0.95746 0.86400 0.93386 1.22207 0.94067 1.01605 0.99357 1.20797 0.92462 0.97295 0.84961 0.89898 1.22206 1.01754 1.00801 0.97293 1.45938 1.17666 1.37690 1.33367 1.20037 0.81419 0.83093 0.83179 1.90626 1.62309 1.31547 1.60248 1.21658 0.95424 1.00528 1.00754 1.19993 0.96033 0.99092 0.89866 1.28892 0.93668 0.92069 0.87388 1.71828 1.16165 1.12759 1.20942 1.24731 0.99664 0.97975 0.85401 1.20016 0.98605 0.95061 0.95770 1.23075 1.01192 1.02768 0.92694 1.23060 0.91724 1.02589 1.02308 1.74567 1.11315 1.03971 1.19526 1.85343 1.52692 1.42186 1.17318 1.42462 1.77973 1.10149 1.05382 1.19205 1.35494 0.93792 0.87231 0.91466 1.24551 1.02494 0.95902 0.97507 1.69579 1.51701 1.08336 1.28798 0.86371 0.77366 0.79120 0.84532 1.22000 1.21582 1.20862 0.93633 0.92893 0.94605 0.90877 0.91769 0.92860 0.92212 0.92387 0.75623 0.85399 0.88979 0.86924 0.87295 0.84765 0.87764 0.87500 0.87489 0.88510 0.78725 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.49 37.16 0.35 -2.37 16 2 C 0.17 3.01 2.89 -67.93 -0.20 2.81 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 C -0.13 -1.90 4.43 -26.73 -0.12 -2.02 16 5 C 0.15 2.26 2.57 -67.93 -0.17 2.09 16 6 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 7 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 8 N -0.69 -11.58 3.81 -53.81 -0.20 -11.78 16 9 C 0.54 9.56 7.79 -10.99 -0.09 9.47 16 10 O -0.57 -11.20 15.65 5.55 0.09 -11.11 16 11 C -0.14 -2.36 5.68 -27.88 -0.16 -2.51 16 12 C -0.01 -0.16 5.13 -27.88 -0.14 -0.30 16 13 C 0.20 3.24 7.77 -13.06 -0.10 3.14 16 14 N -0.48 -7.89 11.55 -9.87 -0.11 -8.01 16 15 C 0.19 3.06 7.74 -156.36 -1.21 1.85 16 16 C -0.07 -0.88 6.33 -91.77 -0.58 -1.46 16 17 C -0.16 -1.59 10.14 -26.74 -0.27 -1.87 16 18 C -0.16 -1.49 10.23 -26.74 -0.27 -1.77 16 19 N -0.39 -6.70 11.77 30.90 0.36 -6.33 16 20 O 0.08 1.47 11.31 18.11 0.20 1.68 16 21 N -0.72 -15.41 3.84 -53.42 -0.21 -15.61 16 22 C -0.23 -5.66 9.93 -15.06 -0.15 -5.81 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -24.49 12.78 55.49 0.71 -23.78 16 26 Si 0.89 21.56 29.55 -169.99 -5.02 16.54 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.41 6.94 6.49 -40.82 -0.26 6.68 16 39 H 0.13 2.52 7.86 -51.93 -0.41 2.11 16 40 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.11 1.54 8.10 -51.93 -0.42 1.12 16 42 H 0.11 1.61 8.10 -51.94 -0.42 1.19 16 43 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.10 1.20 7.91 -51.93 -0.41 0.79 16 45 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.38 8.32 5.70 -40.82 -0.23 8.09 16 49 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 408.51 15.07 6.16 6.16 Total: -1.00 -28.95 408.51 -8.90 -37.85 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -8.01 Total: 15.19 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.85 Total: -0.79 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: 0.55 Total: -65.51 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.29 Total: -9.44 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -28.95 -8.90 -37.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135648946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.125 kcal (2) G-P(sol) polarization free energy of solvation -28.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds