Wall clock time and date at job start Tue Mar 31 2020 20:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47128 * 2 1 4 4 C 1.53000 * 109.47119 * 240.00271 * 2 1 3 5 5 C 1.53000 * 109.47214 * 174.99805 * 4 2 1 6 6 H 1.08999 * 109.47446 * 305.00593 * 5 4 2 7 7 C 1.52995 * 109.47146 * 184.99844 * 5 4 2 8 8 N 1.46506 * 109.46808 * 65.00388 * 5 4 2 9 9 C 1.34777 * 119.99873 * 205.00186 * 8 5 4 10 10 O 1.21284 * 119.99754 * 359.97438 * 9 8 5 11 11 C 1.50696 * 120.00137 * 179.97438 * 9 8 5 12 12 C 1.53002 * 109.47300 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.46919 * 179.97438 * 12 11 9 14 14 N 1.31131 * 126.55012 * 89.71356 * 13 12 11 15 15 C 1.34500 * 105.61312 * 179.91200 * 14 13 12 16 16 C 1.50707 * 126.28721 * 180.12193 * 15 14 13 17 17 C 1.52991 * 117.49758 * 188.90997 * 16 15 14 18 18 C 1.52993 * 60.00316 * 252.51385 * 17 16 15 19 19 N 1.29948 * 107.42514 * 0.35273 * 15 14 13 20 20 O 1.21300 * 110.24812 * 359.77471 * 19 15 14 21 21 N 1.46503 * 109.47081 * 120.00579 * 2 1 3 22 22 C 1.36938 * 119.99497 * 274.99560 * 21 2 1 23 23 H 1.07996 * 120.00250 * 0.02562 * 22 21 2 24 24 C 1.38813 * 119.99578 * 179.97438 * 22 21 2 25 25 N 1.31614 * 120.00175 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99797 * 180.02562 * 24 22 21 27 27 H 1.48509 * 109.46888 * 90.00572 * 26 24 22 28 28 H 1.48503 * 109.47131 * 209.99957 * 26 24 22 29 29 H 1.48495 * 109.47670 * 330.00605 * 26 24 22 30 30 H 1.09001 * 109.47416 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47230 * 299.99729 * 1 2 3 32 32 H 1.09006 * 109.47046 * 59.99464 * 1 2 3 33 33 H 1.09004 * 109.46980 * 55.00269 * 4 2 1 34 34 H 1.09003 * 109.47135 * 295.00261 * 4 2 1 35 35 H 1.09002 * 109.47311 * 300.00221 * 7 5 4 36 36 H 1.09002 * 109.46959 * 60.00507 * 7 5 4 37 37 H 1.09003 * 109.47335 * 180.02562 * 7 5 4 38 38 H 0.96995 * 120.00050 * 24.72300 * 8 5 4 39 39 H 1.09004 * 109.47043 * 299.99732 * 11 9 8 40 40 H 1.09000 * 109.46978 * 59.99653 * 11 9 8 41 41 H 1.09000 * 109.46497 * 299.99731 * 12 11 9 42 42 H 1.08987 * 109.47025 * 59.99846 * 12 11 9 43 43 H 1.08997 * 115.54908 * 334.62688 * 16 15 14 44 44 H 1.09005 * 117.50193 * 0.02562 * 17 16 15 45 45 H 1.09004 * 117.50196 * 145.02421 * 17 16 15 46 46 H 1.08997 * 117.50093 * 252.51042 * 18 17 16 47 47 H 1.09001 * 117.51787 * 107.48290 * 18 17 16 48 48 H 0.96990 * 119.99946 * 94.99857 * 21 2 1 49 49 H 0.96999 * 120.00027 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8571 0.4359 -1.2677 7 6 4.0644 -1.2249 -2.6241 8 7 4.1537 -1.3343 -0.1825 9 6 5.3747 -0.9912 0.2733 10 8 5.9862 -0.0858 -0.2534 11 6 5.9802 -1.7324 1.4373 12 6 7.3599 -1.1500 1.7508 13 6 7.9650 -1.8909 2.9152 14 7 8.7155 -2.9644 2.8527 15 6 9.0223 -3.2663 4.1270 16 6 9.8723 -4.4214 4.5902 17 6 9.9234 -4.7026 6.0932 18 6 11.1363 -4.0932 5.3873 19 7 8.4470 -2.3819 4.8857 20 8 7.8347 -1.5828 4.2090 21 7 2.0183 -0.6907 1.1961 22 6 2.1491 -0.0076 2.3757 23 1 1.8920 1.0402 2.4243 24 6 2.6113 -0.6622 3.5092 25 7 2.9243 -1.9392 3.4500 26 14 2.7891 0.2694 5.1185 27 1 1.5211 0.1781 5.8860 28 1 3.8934 -0.3240 5.9146 29 1 3.0941 1.6947 4.8344 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -0.2616 -2.1370 34 1 1.7516 -1.7715 -1.2057 35 1 3.7722 -2.2740 -2.6701 36 1 3.6263 -0.6884 -3.4658 37 1 5.1508 -1.1484 -2.6699 38 1 3.6630 -2.0559 0.2410 39 1 5.3348 -1.6285 2.3095 40 1 6.0808 -2.7876 1.1833 41 1 8.0050 -1.2543 0.8784 42 1 7.2597 -0.0948 2.0045 43 1 9.9104 -5.2770 3.9161 44 1 9.3420 -4.0525 6.7470 45 1 9.9951 -5.7437 6.4083 46 1 12.0059 -4.7332 5.2380 47 1 11.3533 -3.0418 5.5764 48 1 2.2490 -1.6318 1.1525 49 1 3.2476 -2.3965 4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135648946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:09 Heat of formation + Delta-G solvation = 41.006829 kcal Electronic energy + Delta-G solvation = -29883.567443 eV Core-core repulsion = 25849.299082 eV Total energy + Delta-G solvation = -4034.268361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.69181 -40.78758 -38.70733 -38.37124 -36.70689 -35.79448 -34.99750 -33.99790 -32.47602 -31.56735 -30.17012 -27.57031 -26.77735 -26.33807 -25.54645 -24.17206 -23.38731 -22.37169 -21.63734 -21.31063 -20.87651 -19.19311 -19.08430 -18.77443 -17.90833 -17.15087 -16.73176 -16.62222 -16.49031 -15.97026 -15.58760 -15.46134 -15.19554 -14.93811 -14.34816 -14.22423 -14.13382 -13.70895 -13.52410 -13.45917 -13.35500 -13.28724 -13.12576 -13.07718 -12.86365 -12.76699 -12.57035 -12.54159 -12.29232 -12.23464 -12.14482 -12.11756 -11.74841 -11.66200 -11.57259 -11.56263 -11.36329 -10.85983 -10.83137 -10.61757 -9.76149 -8.80528 -7.85441 -5.06534 -0.01093 1.02844 1.44380 1.50621 1.53335 1.69464 1.86392 2.37035 2.58189 2.62253 2.71901 3.05590 3.49370 3.60957 3.74063 3.84125 3.85691 3.92599 3.99908 4.03465 4.17048 4.24395 4.32674 4.44860 4.53268 4.61532 4.63384 4.64612 4.73836 4.75807 4.82147 4.88253 4.91766 4.95251 4.97579 4.99852 5.05189 5.11359 5.13098 5.17881 5.20827 5.43128 5.46196 5.62885 5.66603 5.85897 6.36660 6.78030 7.03359 7.46284 7.47625 8.20524 8.47492 9.34884 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011689 B = 0.003481 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.880314 B = 8042.185461 C = 9790.631946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.032 0.968 4 C -0.120 4.120 5 C 0.146 3.854 6 H 0.059 0.941 7 C -0.152 4.152 8 N -0.692 5.692 9 C 0.531 3.469 10 O -0.589 6.589 11 C -0.132 4.132 12 C -0.002 4.002 13 C 0.201 3.799 14 N -0.491 5.491 15 C 0.197 3.803 16 C -0.100 4.100 17 C -0.154 4.154 18 C -0.140 4.140 19 N -0.409 5.409 20 O 0.056 5.944 21 N -0.719 5.719 22 C -0.219 4.219 23 H 0.058 0.942 24 C -0.047 4.047 25 N -0.943 5.943 26 Si 0.932 3.068 27 H -0.296 1.296 28 H -0.302 1.302 29 H -0.282 1.282 30 H 0.046 0.954 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.405 0.595 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.107 0.893 43 H 0.152 0.848 44 H 0.083 0.917 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.084 0.916 48 H 0.375 0.625 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.253 -5.535 -6.806 12.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 H 0.050 0.950 4 C -0.159 4.159 5 C 0.042 3.958 6 H 0.077 0.923 7 C -0.210 4.210 8 N -0.343 5.343 9 C 0.319 3.681 10 O -0.471 6.471 11 C -0.173 4.173 12 C -0.041 4.041 13 C -0.019 4.019 14 N -0.225 5.225 15 C -0.075 4.075 16 C -0.120 4.120 17 C -0.192 4.192 18 C -0.178 4.178 19 N -0.122 5.122 20 O 0.003 5.997 21 N -0.362 5.362 22 C -0.352 4.352 23 H 0.076 0.924 24 C -0.241 4.241 25 N -0.594 5.594 26 Si 0.765 3.235 27 H -0.224 1.224 28 H -0.230 1.230 29 H -0.208 1.208 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.242 0.758 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.147 0.853 42 H 0.125 0.875 43 H 0.170 0.830 44 H 0.101 0.899 45 H 0.154 0.846 46 H 0.158 0.842 47 H 0.103 0.897 48 H 0.210 0.790 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.904 -5.065 -6.420 12.843 hybrid contribution -0.525 0.260 1.647 1.749 sum 9.378 -4.805 -4.773 11.568 Atomic orbital electron populations 1.22288 0.97917 1.00912 1.00372 1.20503 0.92546 0.95055 0.86568 0.95008 1.22122 0.93168 1.01983 0.98583 1.20932 0.93155 0.96080 0.85646 0.92251 1.22102 1.00810 1.01721 0.96359 1.46018 1.17187 1.37436 1.33631 1.20210 0.81769 0.82881 0.83289 1.90609 1.62942 1.32454 1.61090 1.21507 0.95463 1.01360 0.98967 1.19976 0.95449 0.98704 0.90003 1.29114 0.93424 0.92116 0.87212 1.71852 1.16471 1.12794 1.21426 1.25516 0.98804 0.98173 0.85018 1.20372 0.99899 0.94490 0.97217 1.23154 1.01031 1.04059 0.90925 1.23173 0.91960 1.02583 1.00084 1.74567 1.12597 1.04899 1.20090 1.85310 1.53485 1.42944 1.17934 1.42527 1.78048 1.10010 1.05600 1.19304 1.33920 0.93469 0.88485 0.92429 1.24881 1.03734 0.96499 0.98951 1.69648 1.52755 1.08677 1.28337 0.85767 0.76437 0.78429 0.82891 1.22427 1.22965 1.20770 0.93485 0.95300 0.91304 0.87499 0.90724 0.91545 0.89813 0.93884 0.75814 0.88465 0.87663 0.85292 0.87478 0.83027 0.89859 0.84622 0.84215 0.89734 0.78994 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 9.49 71.98 0.68 -4.14 16 2 C 0.16 5.52 2.89 44.99 0.13 5.65 16 3 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 4 C -0.12 -3.08 4.43 30.59 0.14 -2.95 16 5 C 0.15 4.18 2.57 44.99 0.12 4.30 16 6 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 7 C -0.15 -3.45 9.48 71.98 0.68 -2.77 16 8 N -0.69 -22.72 3.81 -442.53 -1.69 -24.40 16 9 C 0.53 19.04 7.79 87.66 0.68 19.73 16 10 O -0.59 -23.36 15.65 -3.04 -0.05 -23.41 16 11 C -0.13 -4.44 5.68 29.85 0.17 -4.27 16 12 C 0.00 -0.06 5.13 29.85 0.15 0.09 16 13 C 0.20 6.69 7.77 88.38 0.69 7.38 16 14 N -0.49 -16.08 11.55 -303.20 -3.50 -19.58 16 15 C 0.20 6.22 7.74 138.46 1.07 7.29 16 16 C -0.10 -2.23 6.33 -11.54 -0.07 -2.30 16 17 C -0.15 -2.84 10.14 30.59 0.31 -2.53 16 18 C -0.14 -2.35 10.23 30.59 0.31 -2.04 16 19 N -0.41 -14.65 11.77 -60.31 -0.71 -15.36 16 20 O 0.06 2.09 11.31 74.85 0.85 2.94 16 21 N -0.72 -30.70 3.84 -322.93 -1.24 -31.94 16 22 C -0.22 -11.07 9.93 84.03 0.83 -10.24 16 23 H 0.06 2.99 7.83 -2.91 -0.02 2.97 16 24 C -0.05 -2.46 5.50 84.86 0.47 -2.00 16 25 N -0.94 -50.24 12.78 21.65 0.28 -49.96 16 26 Si 0.93 45.22 29.55 68.60 2.03 47.25 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 28 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 29 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.40 13.64 6.49 -92.71 -0.60 13.03 16 39 H 0.10 3.97 7.86 -2.38 -0.02 3.96 16 40 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.13 3.49 8.10 -2.39 -0.02 3.47 16 42 H 0.11 3.28 8.10 -2.39 -0.02 3.26 16 43 H 0.15 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.08 1.91 7.91 -2.38 -0.02 1.90 16 45 H 0.14 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.38 16.40 5.70 -92.72 -0.53 15.87 16 49 H 0.24 13.30 8.31 -92.71 -0.77 12.53 16 Total: -1.00 -63.75 408.51 2.16 -61.60 By element: Atomic # 1 Polarization: 41.84 SS G_CDS: -0.17 Total: 41.67 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.36 Total: 11.19 kcal Atomic # 7 Polarization: -134.38 SS G_CDS: -6.86 Total: -141.25 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.80 Total: -20.47 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -63.75 2.16 -61.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135648946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.603 kcal (2) G-P(sol) polarization free energy of solvation -63.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds