Wall clock time and date at job start Tue Mar 31 2020 20:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 H 1.09002 * 109.47069 * 304.99600 * 5 4 2 7 7 C 1.53006 * 109.46846 * 185.00166 * 5 4 2 8 8 N 1.46498 * 109.47465 * 65.00143 * 5 4 2 9 9 C 1.34775 * 119.99962 * 204.99918 * 8 5 4 10 10 O 1.21279 * 120.00095 * 0.02562 * 9 8 5 11 11 C 1.50697 * 120.00075 * 179.97438 * 9 8 5 12 12 C 1.53000 * 109.47410 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47091 * 180.02562 * 12 11 9 14 14 N 1.31134 * 126.55334 * 89.71582 * 13 12 11 15 15 C 1.34488 * 105.61338 * 179.91466 * 14 13 12 16 16 C 1.50706 * 126.28630 * 180.12588 * 15 14 13 17 17 C 1.52997 * 117.50185 * 188.91144 * 16 15 14 18 18 C 1.52998 * 117.50090 * 120.28578 * 16 15 14 19 19 N 1.29947 * 107.42935 * 0.34537 * 15 14 13 20 20 O 1.21295 * 110.24734 * 359.78359 * 19 15 14 21 21 N 1.46497 * 109.47224 * 240.00747 * 2 1 3 22 22 C 1.36939 * 120.00530 * 84.99153 * 21 2 1 23 23 H 1.07999 * 119.99437 * 0.02562 * 22 21 2 24 24 C 1.38808 * 120.00276 * 179.97438 * 22 21 2 25 25 N 1.31624 * 120.00057 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00117 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47073 * 90.00442 * 26 24 22 28 28 H 1.48503 * 109.47509 * 210.00409 * 26 24 22 29 29 H 1.48503 * 109.47025 * 330.00544 * 26 24 22 30 30 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 31 31 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 33 33 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 34 34 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 35 35 H 1.09002 * 109.46824 * 299.99583 * 7 5 4 36 36 H 1.09001 * 109.47241 * 59.99481 * 7 5 4 37 37 H 1.08996 * 109.46751 * 179.97438 * 7 5 4 38 38 H 0.96998 * 119.99659 * 24.99845 * 8 5 4 39 39 H 1.09001 * 109.47614 * 300.00351 * 11 9 8 40 40 H 1.09001 * 109.46875 * 59.99997 * 11 9 8 41 41 H 1.08997 * 109.47143 * 300.00196 * 12 11 9 42 42 H 1.09001 * 109.47248 * 60.00049 * 12 11 9 43 43 H 1.09005 * 115.54812 * 334.61733 * 16 15 14 44 44 H 1.08999 * 117.49880 * 359.97438 * 17 16 15 45 45 H 1.08995 * 117.50367 * 145.02003 * 17 16 15 46 46 H 1.09005 * 117.49630 * 214.98503 * 18 16 15 47 47 H 1.08997 * 117.49670 * 359.97438 * 18 16 15 48 48 H 0.97001 * 119.99762 * 264.99736 * 21 2 1 49 49 H 0.97002 * 119.99591 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 1 3.9954 -0.9922 0.3866 7 6 4.0853 -1.4384 2.4923 8 7 3.9480 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9356 0.4343 0.5730 11 6 5.5551 2.6566 1.2701 12 6 6.9698 2.8719 0.7288 13 6 7.3638 4.3148 0.9129 14 7 7.9611 4.8340 1.9585 15 6 8.1119 6.1405 1.6776 16 6 8.7508 7.1760 2.5668 17 6 8.6326 8.6413 2.1427 18 6 9.9745 7.9161 2.0232 19 7 7.6015 6.3470 0.5005 20 8 7.1663 5.3109 0.0441 21 7 2.0183 -0.6904 -1.1962 22 6 2.1490 -0.0073 -2.3758 23 1 1.8924 1.0407 -2.4241 24 6 2.6122 -0.6614 -3.5091 25 7 2.9254 -1.9385 -3.4501 26 14 2.7911 0.2707 -5.1180 27 1 4.1534 0.8559 -5.2022 28 1 2.5812 -0.6605 -6.2556 29 1 1.7810 1.3578 -5.1753 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.7517 -1.7716 1.2054 34 1 1.6054 -0.2618 2.1369 35 1 3.6547 -1.0594 3.4192 36 1 3.8002 -2.4820 2.3592 37 1 5.1716 -1.3617 2.5378 38 1 3.3285 1.4128 1.9029 39 1 4.8579 3.2954 0.7279 40 1 5.5291 2.9083 2.3304 41 1 7.6673 2.2332 1.2707 42 1 6.9954 2.6204 -0.3315 43 1 8.7281 6.9574 3.6345 44 1 8.0931 8.8563 1.2203 45 1 8.5320 9.3870 2.9313 46 1 10.7568 8.1847 2.7332 47 1 10.3178 7.6538 1.0225 48 1 2.2491 -1.6316 -1.1527 49 1 3.2488 -2.3956 -4.2422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135648947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:14 Heat of formation + Delta-G solvation = 52.649234 kcal Electronic energy + Delta-G solvation = -28773.628259 eV Core-core repulsion = 24739.864751 eV Total energy + Delta-G solvation = -4033.763508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.78277 -39.69275 -38.05410 -36.98762 -35.79730 -34.53009 -34.11182 -32.19041 -31.43424 -30.35423 -28.58397 -26.36381 -25.87896 -25.54267 -23.61334 -23.28951 -22.83958 -21.28922 -20.51803 -20.17431 -19.70452 -18.28288 -17.93070 -17.31345 -16.86777 -16.02820 -15.91416 -15.60252 -15.24435 -14.74228 -14.40620 -14.05278 -13.89276 -13.68228 -13.33839 -13.09637 -12.80928 -12.67004 -12.62748 -12.50656 -12.33473 -12.13482 -12.00605 -11.97221 -11.72983 -11.59324 -11.39487 -11.30131 -11.02693 -10.99796 -10.95013 -10.80528 -10.60731 -10.41614 -10.21323 -9.95651 -9.88656 -9.60693 -9.56053 -8.86127 -8.72203 -6.90325 -5.71230 -2.99245 0.91354 1.89855 2.57730 2.89116 3.16532 3.36403 3.47049 3.47879 3.52083 3.53646 3.84723 4.32618 4.38895 4.47966 4.58361 4.63928 4.81727 4.90481 5.06633 5.15429 5.16850 5.27288 5.33117 5.41986 5.49006 5.49935 5.52123 5.60453 5.63333 5.64063 5.69764 5.76729 5.82255 5.89878 5.94886 6.02190 6.13910 6.29756 6.36026 6.44266 6.57474 6.72110 6.81150 6.93065 7.07976 7.73834 7.75927 7.96767 8.46997 8.49726 9.58470 10.15858 10.49952 11.51421 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.002561 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.544323 B =10931.836550 C =12358.298450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.046 0.954 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.715 5.715 9 C 0.518 3.482 10 O -0.532 6.532 11 C -0.138 4.138 12 C -0.014 4.014 13 C 0.194 3.806 14 N -0.479 5.479 15 C 0.198 3.802 16 C -0.079 4.079 17 C -0.159 4.159 18 C -0.157 4.157 19 N -0.385 5.385 20 O 0.081 5.919 21 N -0.720 5.720 22 C -0.234 4.234 23 H 0.067 0.933 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.902 3.098 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.395 0.605 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.136 0.864 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.097 0.903 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.664 14.718 16.963 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.170 4.170 5 C 0.039 3.961 6 H 0.124 0.876 7 C -0.219 4.219 8 N -0.366 5.366 9 C 0.303 3.697 10 O -0.408 6.408 11 C -0.179 4.179 12 C -0.053 4.053 13 C -0.027 4.027 14 N -0.213 5.213 15 C -0.074 4.074 16 C -0.098 4.098 17 C -0.197 4.197 18 C -0.196 4.196 19 N -0.093 5.093 20 O 0.022 5.978 21 N -0.362 5.362 22 C -0.366 4.366 23 H 0.085 0.915 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.733 3.267 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.228 0.772 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.153 0.847 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.116 0.884 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.397 15.030 16.453 23.814 hybrid contribution -0.337 0.309 -0.807 0.928 sum 8.060 15.339 15.646 23.346 Atomic orbital electron populations 1.22463 0.99600 1.00799 0.99738 1.20220 0.91529 0.95526 0.86578 0.93643 1.22169 0.93776 1.02230 0.98795 1.21044 0.95074 0.80051 0.99887 0.87552 1.22184 1.01506 1.00221 0.98011 1.45938 1.16338 1.11778 1.62513 1.20119 0.82216 0.89290 0.78029 1.90755 1.51003 1.56466 1.42567 1.21611 0.96486 0.95946 1.03901 1.20015 0.97427 0.81642 1.06260 1.28902 0.93848 0.95926 0.83996 1.71864 1.18616 1.06019 1.24799 1.24783 0.99684 0.91329 0.91651 1.20060 1.02713 0.89492 0.97564 1.23084 1.00125 0.92374 1.04084 1.23082 0.91311 1.02109 1.03050 1.74589 1.16025 1.05595 1.13097 1.85337 1.58302 1.12659 1.41477 1.42396 1.77968 1.10561 1.05262 1.19139 1.36425 0.93636 0.87351 0.91536 1.24694 1.02226 0.95928 0.97937 1.69649 1.50901 1.08599 1.28785 0.86272 0.77806 0.78618 0.83983 1.21708 1.21887 1.20920 0.92925 0.93545 0.94757 0.90646 0.92100 0.93195 0.91763 0.92498 0.77189 0.88029 0.88306 0.86267 0.86616 0.84668 0.87770 0.87408 0.87330 0.88404 0.78348 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.49 37.16 0.35 -2.47 16 2 C 0.17 3.12 2.84 -67.93 -0.19 2.93 16 3 H 0.05 0.84 7.56 -51.93 -0.39 0.44 16 4 C -0.13 -1.90 4.29 -26.73 -0.11 -2.01 16 5 C 0.14 2.17 2.52 -67.93 -0.17 2.00 16 6 H 0.11 2.16 7.05 -51.93 -0.37 1.79 16 7 C -0.16 -2.08 9.48 37.16 0.35 -1.73 16 8 N -0.71 -9.33 4.45 -53.81 -0.24 -9.57 16 9 C 0.52 7.35 7.79 -10.99 -0.09 7.27 16 10 O -0.53 -9.88 15.64 5.56 0.09 -9.79 16 11 C -0.14 -1.40 5.68 -27.88 -0.16 -1.56 16 12 C -0.01 -0.15 5.13 -27.88 -0.14 -0.29 16 13 C 0.19 2.25 7.77 -13.05 -0.10 2.15 16 14 N -0.48 -5.96 11.55 -9.87 -0.11 -6.08 16 15 C 0.20 2.36 7.74 -156.37 -1.21 1.15 16 16 C -0.08 -0.68 6.33 -91.77 -0.58 -1.26 16 17 C -0.16 -1.11 10.14 -26.73 -0.27 -1.38 16 18 C -0.16 -1.09 10.23 -26.73 -0.27 -1.37 16 19 N -0.39 -5.01 11.77 30.90 0.36 -4.65 16 20 O 0.08 1.03 11.31 18.10 0.20 1.23 16 21 N -0.72 -17.19 4.49 -53.43 -0.24 -17.43 16 22 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 26 Si 0.90 22.62 29.55 -169.99 -5.02 17.60 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 29 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.39 3.96 8.60 -40.82 -0.35 3.61 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.12 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.12 1.28 8.10 -51.93 -0.42 0.86 16 43 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.10 0.86 7.91 -51.93 -0.41 0.45 16 45 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 49 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 413.27 15.07 6.23 6.23 Total: -1.00 -33.89 413.27 -9.00 -42.89 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -8.14 Total: 10.48 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.84 Total: -3.51 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: 0.49 Total: -65.12 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.29 Total: -8.56 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.89 -9.00 -42.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135648947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.538 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds