Wall clock time and date at job start Tue Mar 31 2020 20:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 H 1.09002 * 109.47069 * 304.99600 * 5 4 2 7 7 C 1.53006 * 109.46846 * 185.00166 * 5 4 2 8 8 N 1.46498 * 109.47465 * 65.00143 * 5 4 2 9 9 C 1.34775 * 119.99962 * 204.99918 * 8 5 4 10 10 O 1.21279 * 120.00095 * 0.02562 * 9 8 5 11 11 C 1.50697 * 120.00075 * 179.97438 * 9 8 5 12 12 C 1.53000 * 109.47410 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47091 * 180.02562 * 12 11 9 14 14 N 1.31134 * 126.55334 * 89.71582 * 13 12 11 15 15 C 1.34488 * 105.61338 * 179.91466 * 14 13 12 16 16 C 1.50706 * 126.28630 * 180.12588 * 15 14 13 17 17 C 1.52997 * 117.50185 * 188.91144 * 16 15 14 18 18 C 1.52998 * 117.50090 * 120.28578 * 16 15 14 19 19 N 1.29947 * 107.42935 * 0.34537 * 15 14 13 20 20 O 1.21295 * 110.24734 * 359.78359 * 19 15 14 21 21 N 1.46497 * 109.47224 * 240.00747 * 2 1 3 22 22 C 1.36939 * 120.00530 * 84.99153 * 21 2 1 23 23 H 1.07999 * 119.99437 * 0.02562 * 22 21 2 24 24 C 1.38808 * 120.00276 * 179.97438 * 22 21 2 25 25 N 1.31624 * 120.00057 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00117 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47073 * 90.00442 * 26 24 22 28 28 H 1.48503 * 109.47509 * 210.00409 * 26 24 22 29 29 H 1.48503 * 109.47025 * 330.00544 * 26 24 22 30 30 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 31 31 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 33 33 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 34 34 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 35 35 H 1.09002 * 109.46824 * 299.99583 * 7 5 4 36 36 H 1.09001 * 109.47241 * 59.99481 * 7 5 4 37 37 H 1.08996 * 109.46751 * 179.97438 * 7 5 4 38 38 H 0.96998 * 119.99659 * 24.99845 * 8 5 4 39 39 H 1.09001 * 109.47614 * 300.00351 * 11 9 8 40 40 H 1.09001 * 109.46875 * 59.99997 * 11 9 8 41 41 H 1.08997 * 109.47143 * 300.00196 * 12 11 9 42 42 H 1.09001 * 109.47248 * 60.00049 * 12 11 9 43 43 H 1.09005 * 115.54812 * 334.61733 * 16 15 14 44 44 H 1.08999 * 117.49880 * 359.97438 * 17 16 15 45 45 H 1.08995 * 117.50367 * 145.02003 * 17 16 15 46 46 H 1.09005 * 117.49630 * 214.98503 * 18 16 15 47 47 H 1.08997 * 117.49670 * 359.97438 * 18 16 15 48 48 H 0.97001 * 119.99762 * 264.99736 * 21 2 1 49 49 H 0.97002 * 119.99591 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 1 3.9954 -0.9922 0.3866 7 6 4.0853 -1.4384 2.4923 8 7 3.9480 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9356 0.4343 0.5730 11 6 5.5551 2.6566 1.2701 12 6 6.9698 2.8719 0.7288 13 6 7.3638 4.3148 0.9129 14 7 7.9611 4.8340 1.9585 15 6 8.1119 6.1405 1.6776 16 6 8.7508 7.1760 2.5668 17 6 8.6326 8.6413 2.1427 18 6 9.9745 7.9161 2.0232 19 7 7.6015 6.3470 0.5005 20 8 7.1663 5.3109 0.0441 21 7 2.0183 -0.6904 -1.1962 22 6 2.1490 -0.0073 -2.3758 23 1 1.8924 1.0407 -2.4241 24 6 2.6122 -0.6614 -3.5091 25 7 2.9254 -1.9385 -3.4501 26 14 2.7911 0.2707 -5.1180 27 1 4.1534 0.8559 -5.2022 28 1 2.5812 -0.6605 -6.2556 29 1 1.7810 1.3578 -5.1753 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.7517 -1.7716 1.2054 34 1 1.6054 -0.2618 2.1369 35 1 3.6547 -1.0594 3.4192 36 1 3.8002 -2.4820 2.3592 37 1 5.1716 -1.3617 2.5378 38 1 3.3285 1.4128 1.9029 39 1 4.8579 3.2954 0.7279 40 1 5.5291 2.9083 2.3304 41 1 7.6673 2.2332 1.2707 42 1 6.9954 2.6204 -0.3315 43 1 8.7281 6.9574 3.6345 44 1 8.0931 8.8563 1.2203 45 1 8.5320 9.3870 2.9313 46 1 10.7568 8.1847 2.7332 47 1 10.3178 7.6538 1.0225 48 1 2.2491 -1.6316 -1.1527 49 1 3.2488 -2.3956 -4.2422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135648947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:13 Heat of formation + Delta-G solvation = 29.215514 kcal Electronic energy + Delta-G solvation = -28774.644422 eV Core-core repulsion = 24739.864751 eV Total energy + Delta-G solvation = -4034.779671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.70946 -40.86374 -38.69818 -38.36536 -36.73111 -36.01561 -35.07672 -33.97406 -32.55559 -31.48809 -30.36542 -27.57235 -26.85603 -26.34965 -25.61663 -24.18478 -23.37760 -22.44395 -21.54046 -21.18353 -21.11721 -19.31438 -19.16413 -18.78520 -18.03299 -17.15529 -16.76465 -16.67027 -16.44925 -16.01759 -15.60556 -15.49338 -15.19050 -15.04301 -14.53317 -14.25512 -14.17529 -13.73652 -13.56567 -13.54031 -13.36505 -13.29116 -13.13809 -13.08266 -12.89477 -12.77284 -12.61518 -12.53263 -12.28343 -12.20639 -12.16644 -12.14973 -11.78379 -11.74759 -11.55234 -11.51566 -11.37141 -10.90019 -10.85313 -10.67511 -9.90141 -8.91146 -7.88771 -5.13748 -0.01051 1.02307 1.45446 1.47523 1.54215 1.65193 1.77582 2.30580 2.51058 2.59093 2.73312 3.04939 3.45973 3.58315 3.71609 3.76962 3.86667 3.92633 3.97646 4.03400 4.08801 4.20626 4.29776 4.46310 4.49826 4.59111 4.60504 4.65923 4.69835 4.75080 4.82420 4.83884 4.87846 4.90310 4.96389 4.99755 5.01234 5.08559 5.12467 5.13996 5.29461 5.40301 5.48154 5.56379 5.66497 5.74134 6.34470 6.70940 7.04751 7.40347 7.43556 8.21101 8.40360 9.35001 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.002561 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.544323 B =10931.836550 C =12358.298450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 H 0.047 0.953 4 C -0.118 4.118 5 C 0.147 3.853 6 H 0.048 0.952 7 C -0.151 4.151 8 N -0.705 5.705 9 C 0.512 3.488 10 O -0.584 6.584 11 C -0.124 4.124 12 C -0.009 4.009 13 C 0.201 3.799 14 N -0.492 5.492 15 C 0.196 3.804 16 C -0.099 4.099 17 C -0.150 4.150 18 C -0.149 4.149 19 N -0.405 5.405 20 O 0.066 5.934 21 N -0.731 5.731 22 C -0.221 4.221 23 H 0.071 0.929 24 C -0.079 4.079 25 N -0.969 5.969 26 Si 0.959 3.041 27 H -0.294 1.294 28 H -0.299 1.299 29 H -0.269 1.269 30 H 0.028 0.972 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.413 0.587 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.151 0.849 44 H 0.088 0.912 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.083 0.917 48 H 0.369 0.631 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.863 17.007 19.689 26.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.065 0.935 4 C -0.156 4.156 5 C 0.042 3.958 6 H 0.066 0.934 7 C -0.209 4.209 8 N -0.357 5.357 9 C 0.299 3.701 10 O -0.464 6.464 11 C -0.165 4.165 12 C -0.049 4.049 13 C -0.019 4.019 14 N -0.226 5.226 15 C -0.076 4.076 16 C -0.118 4.118 17 C -0.187 4.187 18 C -0.187 4.187 19 N -0.116 5.116 20 O 0.011 5.989 21 N -0.371 5.371 22 C -0.354 4.354 23 H 0.089 0.911 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.790 3.210 27 H -0.221 1.221 28 H -0.226 1.226 29 H -0.194 1.194 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.250 0.750 39 H 0.134 0.866 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.124 0.876 43 H 0.169 0.831 44 H 0.106 0.894 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.101 0.899 48 H 0.201 0.799 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.527 17.371 19.221 26.979 hybrid contribution -0.103 -0.359 -1.559 1.603 sum 7.424 17.011 17.662 25.622 Atomic orbital electron populations 1.22322 0.98002 1.00730 1.00656 1.20535 0.92444 0.95478 0.86030 0.93467 1.22070 0.93046 1.02054 0.98471 1.20795 0.95364 0.81358 0.98305 0.93409 1.22079 1.00524 1.00108 0.98237 1.45838 1.16428 1.11412 1.62006 1.20803 0.81885 0.90507 0.76896 1.90740 1.52545 1.58202 1.44885 1.21555 0.96092 0.93020 1.05856 1.19970 0.98026 0.81096 1.05793 1.28986 0.93317 0.95878 0.83703 1.71885 1.19122 1.06456 1.25154 1.25426 0.98799 0.91779 0.91584 1.20360 1.04000 0.89607 0.97848 1.23153 0.99662 0.91830 1.04093 1.23171 0.91669 1.01054 1.02839 1.74591 1.17250 1.05822 1.13917 1.85312 1.58786 1.12926 1.41907 1.42614 1.78134 1.10094 1.06289 1.19497 1.33697 0.93786 0.88403 0.91090 1.25414 1.03751 0.96801 1.01125 1.69802 1.53211 1.10091 1.28979 0.85338 0.77656 0.77635 0.80411 1.22122 1.22579 1.19352 0.95257 0.94125 0.90537 0.90934 0.87589 0.90034 0.91611 0.94106 0.74968 0.86610 0.85447 0.86180 0.87580 0.83094 0.89384 0.84761 0.84727 0.89860 0.79904 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.95 9.49 71.98 0.68 -4.27 16 2 C 0.16 5.66 2.84 44.99 0.13 5.79 16 3 H 0.05 1.63 7.56 -2.39 -0.02 1.61 16 4 C -0.12 -3.13 4.29 30.59 0.13 -2.99 16 5 C 0.15 4.32 2.52 44.99 0.11 4.44 16 6 H 0.05 2.02 7.05 -2.39 -0.02 2.00 16 7 C -0.15 -3.69 9.48 71.98 0.68 -3.01 16 8 N -0.71 -17.21 4.45 -442.53 -1.97 -19.17 16 9 C 0.51 14.25 7.79 87.66 0.68 14.94 16 10 O -0.58 -22.45 15.64 -3.03 -0.05 -22.50 16 11 C -0.12 -2.32 5.68 29.85 0.17 -2.15 16 12 C -0.01 -0.20 5.13 29.85 0.15 -0.05 16 13 C 0.20 4.59 7.77 88.38 0.69 5.28 16 14 N -0.49 -11.81 11.55 -303.22 -3.50 -15.31 16 15 C 0.20 4.53 7.74 138.47 1.07 5.60 16 16 C -0.10 -1.54 6.33 -11.54 -0.07 -1.61 16 17 C -0.15 -1.81 10.14 30.59 0.31 -1.50 16 18 C -0.15 -1.80 10.23 30.59 0.31 -1.49 16 19 N -0.41 -10.46 11.77 -60.34 -0.71 -11.17 16 20 O 0.07 1.68 11.31 74.82 0.85 2.52 16 21 N -0.73 -35.26 4.49 -322.95 -1.45 -36.71 16 22 C -0.22 -12.14 9.93 84.03 0.83 -11.30 16 23 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 24 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 25 N -0.97 -60.60 13.06 21.65 0.28 -60.32 16 26 Si 0.96 47.45 29.55 68.60 2.03 49.48 16 27 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 28 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 29 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 30 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.41 6.89 8.60 -92.71 -0.80 6.09 16 39 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.12 2.51 8.10 -2.39 -0.02 2.49 16 42 H 0.11 2.44 8.10 -2.39 -0.02 2.42 16 43 H 0.15 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.09 1.37 7.91 -2.39 -0.02 1.36 16 45 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.37 19.65 7.80 -92.71 -0.72 18.92 16 49 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -77.38 413.27 1.27 -76.10 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.56 Total: 33.55 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 6.35 Total: 3.53 kcal Atomic # 7 Polarization: -135.34 SS G_CDS: -7.35 Total: -142.69 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.80 Total: -19.97 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -77.38 1.27 -76.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135648947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.320 kcal (2) G-P(sol) polarization free energy of solvation -77.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds