Wall clock time and date at job start Tue Mar 31 2020 20:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 5 5 C 1.52992 * 109.47374 * 175.00038 * 4 2 1 6 6 H 1.08999 * 109.47355 * 304.99881 * 5 4 2 7 7 C 1.52996 * 109.47361 * 184.99895 * 5 4 2 8 8 N 1.46507 * 109.47352 * 64.99636 * 5 4 2 9 9 C 1.36938 * 120.00120 * 205.00288 * 8 5 4 10 10 H 1.07993 * 119.99826 * 0.02562 * 9 8 5 11 11 C 1.38812 * 119.99756 * 179.97438 * 9 8 5 12 12 N 1.31612 * 120.00025 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99943 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46712 * 90.00102 * 13 11 9 15 15 H 1.48493 * 109.47377 * 210.00574 * 13 11 9 16 16 H 1.48503 * 109.46898 * 330.00516 * 13 11 9 17 17 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 18 18 C 1.34780 * 119.99566 * 275.00168 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 2 21 21 C 1.52997 * 109.47212 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47466 * 179.97438 * 21 20 18 23 23 N 1.31134 * 126.54751 * 89.70984 * 22 21 20 24 24 C 1.34501 * 105.61251 * 179.97438 * 23 22 21 25 25 C 1.50691 * 126.28903 * 180.12836 * 24 23 22 26 26 C 1.53005 * 117.50212 * 188.91145 * 25 24 23 27 27 C 1.53003 * 59.99990 * 252.51009 * 26 25 24 28 28 N 1.29954 * 107.42463 * 0.34983 * 24 23 22 29 29 O 1.21301 * 110.24926 * 359.77973 * 28 24 23 30 30 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 32 32 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 33 33 H 1.09002 * 109.46596 * 295.00070 * 4 2 1 34 34 H 1.09000 * 109.47314 * 54.99345 * 4 2 1 35 35 H 1.08997 * 109.47396 * 180.02562 * 7 5 4 36 36 H 1.09003 * 109.47120 * 299.99851 * 7 5 4 37 37 H 1.08993 * 109.47473 * 60.00041 * 7 5 4 38 38 H 0.97003 * 119.99323 * 25.00322 * 8 5 4 39 39 H 0.97008 * 119.99960 * 179.97438 * 12 11 9 40 40 H 0.96995 * 120.00423 * 94.99474 * 17 2 1 41 41 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 42 42 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 43 43 H 1.09002 * 109.47153 * 299.99998 * 21 20 18 44 44 H 1.08998 * 109.47533 * 59.99628 * 21 20 18 45 45 H 1.09005 * 115.55157 * 334.61422 * 25 24 23 46 46 H 1.09003 * 117.49200 * 359.97438 * 26 25 24 47 47 H 1.08997 * 117.50087 * 145.01702 * 26 25 24 48 48 H 1.09001 * 117.49551 * 252.51142 * 27 26 25 49 49 H 1.08996 * 117.52290 * 107.47954 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2678 7 6 4.0644 -1.2248 -2.6242 8 7 4.1537 -1.3342 -0.1826 9 6 5.3944 -0.9856 0.2805 10 1 5.9385 -0.1789 -0.1880 11 6 5.9521 -1.6684 1.3526 12 7 5.2887 -2.6512 1.9238 13 14 7.6448 -1.1934 1.9839 14 1 7.5070 -0.1555 3.0369 15 1 8.3148 -2.3902 2.5530 16 1 8.4583 -0.6567 0.8633 17 7 2.0184 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3571 19 8 1.8590 1.1584 2.4116 20 6 2.6500 -0.7288 3.5873 21 6 2.7019 0.2543 4.7585 22 6 3.2042 -0.4561 5.9889 23 7 4.4544 -0.5746 6.3665 24 6 4.4216 -1.2802 7.5111 25 6 5.6102 -1.6817 8.3458 26 6 5.3669 -2.6589 9.4977 27 6 5.6574 -1.1859 9.7925 28 7 3.1768 -1.5562 7.7625 29 8 2.4613 -1.0918 6.9000 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.7516 -1.7714 -1.2057 34 1 1.6053 -0.2616 -2.1370 35 1 5.1507 -1.1483 -2.6700 36 1 3.7722 -2.2739 -2.6702 37 1 3.6263 -0.6884 -3.4658 38 1 3.6647 -2.0585 0.2384 39 1 5.6786 -3.1286 2.6729 40 1 2.2490 -1.6318 1.1524 41 1 1.9778 -1.5511 3.8324 42 1 3.6493 -1.1205 3.3977 43 1 3.3743 1.0764 4.5133 44 1 1.7028 0.6465 4.9483 45 1 6.5560 -1.7607 7.8097 46 1 4.3469 -3.0110 9.6520 47 1 6.1526 -3.3811 9.7195 48 1 6.6343 -0.9390 10.2082 49 1 4.8290 -0.5690 10.1404 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135648948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:19 Heat of formation + Delta-G solvation = 58.777615 kcal Electronic energy + Delta-G solvation = -29947.151033 eV Core-core repulsion = 25913.653271 eV Total energy + Delta-G solvation = -4033.497762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.42423 -39.39049 -37.76254 -36.93462 -35.43996 -34.27769 -33.70138 -32.29405 -31.09273 -30.20722 -28.53587 -26.36352 -25.46756 -25.20843 -23.66304 -22.97235 -22.58060 -21.09363 -20.24606 -20.13689 -19.45426 -17.92311 -17.59817 -17.18991 -16.54878 -15.80646 -15.72285 -15.13835 -14.97013 -14.81548 -14.18466 -13.90506 -13.73510 -13.38411 -13.15688 -12.95434 -12.71238 -12.48630 -12.18411 -12.16863 -12.12722 -11.94250 -11.86635 -11.73709 -11.72837 -11.65503 -11.05209 -10.92749 -10.84158 -10.80087 -10.73053 -10.67315 -10.58975 -10.37319 -10.24286 -9.90951 -9.68725 -9.61285 -9.21426 -8.95916 -8.36739 -6.96021 -5.82101 -3.07919 1.25934 2.28609 2.93014 3.29660 3.45192 3.50260 3.53616 3.53765 3.65164 3.87370 4.17593 4.59264 4.61904 4.70012 4.77203 5.06491 5.11267 5.25390 5.35654 5.38321 5.40977 5.46997 5.53115 5.54419 5.61123 5.67554 5.74358 5.83527 5.88124 5.88727 5.93989 5.97171 6.00669 6.10524 6.14037 6.20442 6.23898 6.35460 6.40955 6.49709 6.55641 6.60360 6.85107 7.04762 7.17942 7.69661 8.17536 8.31878 8.37200 8.87511 9.49557 10.03091 10.38862 11.39877 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.003646 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.333157 B = 7678.352944 C = 9569.575673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.083 0.917 4 C -0.134 4.134 5 C 0.169 3.831 6 H 0.048 0.952 7 C -0.164 4.164 8 N -0.716 5.716 9 C -0.228 4.228 10 H 0.067 0.933 11 C -0.008 4.008 12 N -0.933 5.933 13 Si 0.896 3.104 14 H -0.286 1.286 15 H -0.294 1.294 16 H -0.286 1.286 17 N -0.695 5.695 18 C 0.536 3.464 19 O -0.567 6.567 20 C -0.144 4.144 21 C -0.009 4.009 22 C 0.197 3.803 23 N -0.470 5.470 24 C 0.200 3.800 25 C -0.077 4.077 26 C -0.159 4.159 27 C -0.158 4.158 28 N -0.391 5.391 29 O 0.072 5.928 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.035 0.965 38 H 0.377 0.623 39 H 0.253 0.747 40 H 0.406 0.594 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.136 0.864 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.234 1.478 6.123 9.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.066 0.934 7 C -0.224 4.224 8 N -0.360 5.360 9 C -0.359 4.359 10 H 0.085 0.915 11 C -0.203 4.203 12 N -0.583 5.583 13 Si 0.728 3.272 14 H -0.214 1.214 15 H -0.220 1.220 16 H -0.212 1.212 17 N -0.346 5.346 18 C 0.323 3.677 19 O -0.447 6.447 20 C -0.185 4.185 21 C -0.048 4.048 22 C -0.024 4.024 23 N -0.203 5.203 24 C -0.072 4.072 25 C -0.097 4.097 26 C -0.196 4.196 27 C -0.196 4.196 28 N -0.100 5.100 29 O 0.015 5.985 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.213 0.787 39 H 0.063 0.937 40 H 0.244 0.756 41 H 0.108 0.892 42 H 0.149 0.851 43 H 0.135 0.865 44 H 0.122 0.878 45 H 0.154 0.846 46 H 0.121 0.879 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.088 1.971 6.834 10.041 hybrid contribution 1.067 -0.563 0.205 1.224 sum -6.021 1.408 7.040 9.370 Atomic orbital electron populations 1.22206 0.96347 1.01584 1.01911 1.20797 0.92406 0.97721 0.84604 0.89903 1.22206 0.97794 1.00603 0.96628 1.20280 0.89706 0.95880 0.88193 0.93426 1.22423 1.01529 1.00335 0.98111 1.42454 1.18703 1.39979 1.34821 1.19186 0.93297 1.13021 1.10408 0.91514 1.24544 0.98302 0.98558 0.98918 1.69575 1.38048 1.24583 1.26055 0.86348 0.84650 0.77422 0.78825 1.21353 1.22031 1.21150 1.45928 1.65610 1.14496 1.08608 1.20040 0.76285 0.86742 0.84665 1.90625 1.52179 1.16129 1.85795 1.21674 1.06861 0.98271 0.91655 1.19986 1.03727 0.96889 0.84243 1.28928 0.85038 0.93710 0.94706 1.71949 1.19427 1.18388 1.10518 1.24749 0.92614 0.96897 0.92896 1.20063 0.94389 1.06372 0.88837 1.23061 1.03970 0.92854 0.99755 1.23057 1.03826 0.97471 0.95266 1.74513 1.04321 1.19513 1.11689 1.85268 1.35869 1.51061 1.26329 0.92857 0.92385 0.92217 0.91776 0.90888 0.92894 0.93642 0.94615 0.78746 0.93678 0.75639 0.89164 0.85139 0.86515 0.87784 0.84631 0.87865 0.87502 0.87473 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 2 C 0.15 2.26 2.57 -67.93 -0.17 2.09 16 3 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.13 -1.91 4.43 -26.73 -0.12 -2.03 16 5 C 0.17 3.03 2.89 -67.93 -0.20 2.84 16 6 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 7 C -0.16 -2.74 9.49 37.16 0.35 -2.39 16 8 N -0.72 -15.55 3.84 -53.43 -0.21 -15.75 16 9 C -0.23 -5.78 9.93 -15.06 -0.15 -5.93 16 10 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.93 -24.67 12.78 55.49 0.71 -23.96 16 13 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 17 N -0.69 -11.58 3.80 -53.80 -0.20 -11.79 16 18 C 0.54 9.57 7.79 -10.98 -0.09 9.49 16 19 O -0.57 -11.22 15.64 5.56 0.09 -11.14 16 20 C -0.14 -2.37 5.68 -27.88 -0.16 -2.53 16 21 C -0.01 -0.14 5.13 -27.89 -0.14 -0.28 16 22 C 0.20 3.18 7.77 -13.05 -0.10 3.08 16 23 N -0.47 -8.54 11.55 -9.86 -0.11 -8.66 16 24 C 0.20 3.30 7.74 -156.37 -1.21 2.09 16 25 C -0.08 -1.01 6.33 -91.77 -0.58 -1.59 16 26 C -0.16 -1.65 10.14 -26.73 -0.27 -1.93 16 27 C -0.16 -1.60 10.23 -26.73 -0.27 -1.88 16 28 N -0.39 -6.37 11.77 30.90 0.36 -6.00 16 29 O 0.07 1.14 11.31 18.10 0.20 1.35 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.38 8.37 5.70 -40.82 -0.23 8.14 16 39 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.41 6.94 6.51 -40.82 -0.27 6.67 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.13 2.65 7.86 -51.93 -0.41 2.24 16 43 H 0.12 1.86 8.10 -51.93 -0.42 1.44 16 44 H 0.10 1.32 8.10 -51.93 -0.42 0.90 16 45 H 0.14 1.72 8.14 -51.93 -0.42 1.30 16 46 H 0.10 1.15 7.91 -51.93 -0.41 0.74 16 47 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 408.51 15.07 6.16 6.16 Total: -1.00 -29.41 408.51 -8.90 -38.30 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -8.01 Total: 15.57 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -2.85 Total: -0.96 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: 0.55 Total: -66.16 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.29 Total: -9.79 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.41 -8.90 -38.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135648948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.078 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds